Tnob047358.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963855945.1
- Location
- OY979697.1:91260727-91276764[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.075 4.7e+03 -1.7 0.6 28 65 52 91 48 120 0.58 2 3 8e-111 5.1e-106 356.1 34.8 1 299 147 431 147 432 0.92 3 3 0.079 4.9e+03 -1.7 4.1 220 244 460 484 436 506 0.46
Sequence Information
- Coding Sequence
- atgtctgaagTTGATGGTGCAAATATCGCAAAATCCACCATGGATTTTCGTGAAATTGGTGAAACAAGTAAAAATGATGTTGATTTGTTAATCAACAGTGATCCTAACGACAGTGAATGTTCTGAAGAGTTTGATTTTAGTGATAACGATTTCAAAGAATTGGATAATGATAACGATGCCAACTTCAATCTTCAATCGATATCACTAAACGATAAAAACGACAAAGAAGATAGTGTAGAGTTTAGTGATAATAACGTAGAAAATAATAACGACAACACATCGATTAAAACTGAGAAAATCATCGAAACTGTTAATGAAGATCTACAAAAGAATcacgatacaaaaaatttagttgcaGTTTGCAGCGATGATGATACATATTACAGCGATGAAGAAAATGAATTTGTTGTTAATGTTTTAGATCAAGTTAATGAAATTGCGGAGGCACGACTTGCAGCACGCCGTCAAGCACGTGCCGAGGCCAGGGAAATACGAATGCGTGAACTGGAACGCCAACAAAAGGAACAAGAACAAAATGCTGATAGGGTATTCGACATGCAAACAGCATCTTCAATGGATCCTTTATCTAGATCACGACTTACAATGTCGGGAAATACCGTGCGAGCTAGTTCGATGTCATCCAGAAGAAGTAGTGAAGATTCCCTAGAAGAGGAGGGTAGAAGTTTGCGTGATATTAGGCATGAACTTAAGGATGTGGAAGAACGATTTAGAAAAGCGATGATAGCAAATGCACAACTAGATAATGAAAGGGCCTCACAATCGTACCAAATTCAACTTCTTAAAGATAAACTTGAGGAAATGGAAGAGTCATACGCTCAGCTTAGTCGGGAATATAAAGAGAAATGCCGTGATCATAATGCTTTAAAGCGTAATTTCGATAAATTAgaagaagaattaaaattaGTTCGAGGACAGCTAGATGAAAGGGATACTCTTATAGCTGAACAGGGATTAGTCATAGTATTGCTAGAAAATGAAGATGGCTCTGATGCCAGACGTGCTCTAGTCAGTATGGAGAACGCACAACTTCTAGGTTCTGTCCAGGGTTCTttagATGTTCGACTGAAAAAATTCACTGAAGAAAAGCAACAACTTCAAAAGGAAGTTCAAAATTTACAGCAGCAATTAAGTGACGTCAAATTACAAGGTCGACGCGGTGGATCAATGAACGGCCCATTGGCAGGAGATGATGACTATGATGCTCAAAgaGAAGCAAACAAACTATTAgctgattataaatataaactgCAAAAAGCAGATCAAGAAATAGCTAGTCTTCAAGCCAGTTTAGCGAGGTCCGAAACGCAAGTTATAAGATATAAAAGTACCGCCGAAGCAGCAGAAAAGGCTGAGGCTGAACTAAAAATTGAGCGAAGAAAGCTTCAAAGAGAGAATCGTGAAGCAATGGAACGCCTAGAAGAGCTCGAGACAACAAATAATCATCTTTTAAAGCGCTTAGATAAACTAAAGAATGCTAAGAGTGCGTTACTTAAGGACCTCTGA
- Protein Sequence
- MSEVDGANIAKSTMDFREIGETSKNDVDLLINSDPNDSECSEEFDFSDNDFKELDNDNDANFNLQSISLNDKNDKEDSVEFSDNNVENNNDNTSIKTEKIIETVNEDLQKNHDTKNLVAVCSDDDTYYSDEENEFVVNVLDQVNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTASSMDPLSRSRLTMSGNTVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESYAQLSREYKEKCRDHNALKRNFDKLEEELKLVRGQLDERDTLIAEQGLVIVLLENEDGSDARRALVSMENAQLLGSVQGSLDVRLKKFTEEKQQLQKEVQNLQQQLSDVKLQGRRGGSMNGPLAGDDDYDAQREANKLLADYKYKLQKADQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETTNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01431915;
- 90% Identity
- iTF_01431915;
- 80% Identity
- -