Tjap002465.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Theretra japonica
Gene Symbol
-
Assembly
GCA_033459515.1
Location
CM065929.1:7371251-7382932[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0001 0.0066 17.1 0.1 3 23 131 151 130 151 0.97
2 19 9.3e-07 6e-05 23.6 1.2 1 23 157 179 157 179 0.99
3 19 5.8e-06 0.00037 21.1 2.7 1 23 185 207 185 207 0.99
4 19 3.8e-06 0.00024 21.6 2.6 1 23 222 244 222 244 0.98
5 19 0.0002 0.013 16.2 0.3 1 23 259 281 259 281 0.98
6 19 5.3e-05 0.0034 18.0 3.1 1 23 296 318 296 318 0.98
7 19 3.7e-07 2.4e-05 24.8 1.5 1 23 333 355 333 355 0.99
8 19 0.00016 0.01 16.5 2.8 1 23 361 383 361 383 0.98
9 19 0.00021 0.013 16.2 0.0 1 23 390 412 390 412 0.98
10 19 1.2e-05 0.00074 20.1 2.1 1 23 418 440 418 440 0.99
11 19 0.037 2.4 9.1 1.8 1 23 447 469 447 469 0.98
12 19 6.2e-07 4e-05 24.1 2.3 1 23 475 497 475 497 0.99
13 19 0.043 2.8 8.9 1.8 1 23 504 526 504 526 0.98
14 19 2.5e-06 0.00016 22.2 1.5 1 23 532 554 532 554 0.99
15 19 0.00048 0.031 15.0 0.7 1 23 561 583 561 583 0.99
16 19 2.5e-06 0.00016 22.2 1.8 1 23 589 611 589 611 0.98
17 19 0.0021 0.13 13.0 0.3 1 20 617 636 617 639 0.93
18 19 3.8e-05 0.0025 18.5 1.3 2 23 646 667 645 667 0.96
19 19 3.1e-06 0.0002 21.9 1.3 1 23 673 696 673 696 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAACAGATCAAGGCTGAGCCTATGAGCTTCTACACCTCCCATCCACATATACACTCCGGTCCCCCAACAATAGTCCGTTCAGATTCAAATCAAGGGATCATCATGCATCATCAACAACACCAAGAGGACTCAAAGGACAGCCTTATAGTGCAACAACAAGTACAACAACACCAACAAGATCTTATGGAACAACACCAGCAACAGGAATTGCAGCAACAGGATGATGAGctgAGCTTCAAAGGTATGGACGATGACGGCGTTGAAATGGATATGGATGGCCGGCAGTGTTCTCAGGGCATGGGTGTGGATCTGGGTTCAGTACAAACTAAAATGGAAGTATCAAATGGTGGTCAGTCTGCACCACGATCTAAGCCCCAGGCTTGTAAAgTCTGCGGTAAAGTACTATCGTCCGCTTCATCTTATTACGTCCACATGAAACTACATTCAGGAAACAAGCCATTCCAATGCacgGTGTGTGACGCGGCGTTTTGTCGCAAGCCGTACTTGGAAGTGCACATGCGCACGCACACGGGCGAGCGCCCATTCCAATGCGATCTGTGCCTCAAGCGATTCACACAAAAATCCAGTCTCAATACGCACAAACGAGTCCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAAACGCGCGCTGCTGGCTAAGGAACGACCCTACCAATGCGGCATCTGCCTAGTGAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGTGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGTCCTTACGCGTGCGGGCTATGCCCCGCGGCCTTCGCACGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACACAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACTTGGAGATTCACACGCGCACCCACACCGGCGAGCGACCCTATCAGTGCGACATCTGTCTCAAGCGCTTCACTCAGAAATCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAAGGCCGGCCCTTCCAGTGCCTGCAGTGCCCCGCTGCCTTCACGTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTATCAGTGTGACGTCTGCCTCAAGAGATTCGCGCAAAAATCAACACTCAACATACACAAAAGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGTCCGGCGGCGTTCACATGCAAGCCGTACCTGGAGATACACATGCGCACGCACACCGGCGAACGTCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCTCGCAGAAATCCACGCTCAACATTCACAAACGCATTCATACCGGTGAACGTCCATACGCATGTGATATTTGTCAGAAACGCTTTGCTGTGAAGAGCTATGTAACAGCTCACAGATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCGCCGCCTCGTGCTACGAGTGCAGCGTGTGCGGACGCAGCTTCGTGCGCGACAGCTACTTAATACGACATCACAACCGCGTGCACCGTGAGAACCACAGCAACGTGTCCGCGAACAGTATCGGCACGCTGAACAGCGTGGCCACCAACACTAACAATTCCAACAGCAACTATGACTCGCCCGGCGTTTGTGACTTAAGCTTTGTGCCAATGGTGAATCGCTACATGACATCACAGGGCACTCAGGTGTCCATGCAAGACACGCAGAGTAAGATGTCGGCGATGTCACCGCAATCTATTGCGTCTATATCATCGCCACCACCTTCACACACCCCTACGCCCCAACCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHIHSGPPTIVRSDSNQGIIMHHQQHQEDSKDSLIVQQQVQQHQQDLMEQHQQQELQQQDDELSFKGMDDDGVEMDMDGRQCSQGMGVDLGSVQTKMEVSNGGQSAPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGICLVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYACGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFSQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSAASCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTLNSVATNTNNSNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00290892; iTF_00787862; iTF_00428341; iTF_00819383; iTF_00622173; iTF_01073785;
80% Identity
-