Basic Information

Insect: Thelaira solivaga
Gene Symbol: -
Assembly: GCA_947397855.1
Location: OX377614.1:38561648-38567910[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0029 12 6.3 0.0 23 48 56 81 40 86 0.90

2 13 0.00031 1.3 9.4 2.3 27 48 90 111 87 116 0.93

3 13 0.34 1.4e+03 -0.3 0.1 23 45 115 137 112 141 0.84

4 13 0.052 2.2e+02 2.3 0.1 24 48 144 168 136 173 0.83

5 13 0.27 1.1e+03 0.0 0.0 14 48 228 265 223 271 0.69

6 13 0.056 2.3e+02 2.2 0.0 23 48 271 296 261 300 0.85

7 13 0.00024 1 9.8 0.4 23 48 301 326 295 332 0.89

8 13 0.24 9.9e+02 0.2 0.0 22 45 329 352 326 358 0.86

9 13 0.087 3.7e+02 1.6 0.1 24 44 359 379 351 385 0.83

10 13 0.0032 13 6.2 0.1 26 52 469 495 463 497 0.89

11 13 0.0018 7.6 7.0 0.0 22 48 499 525 492 530 0.83

12 13 0.017 69 3.9 0.4 22 48 529 555 525 559 0.90

13 13 0.38 1.6e+03 -0.5 0.3 27 52 591 616 589 617 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0029	12	6.3	0.0	23	48	56	81	40	86	0.90
2	13	0.00031	1.3	9.4	2.3	27	48	90	111	87	116	0.93
3	13	0.34	1.4e+03	-0.3	0.1	23	45	115	137	112	141	0.84
4	13	0.052	2.2e+02	2.3	0.1	24	48	144	168	136	173	0.83
5	13	0.27	1.1e+03	0.0	0.0	14	48	228	265	223	271	0.69
6	13	0.056	2.3e+02	2.2	0.0	23	48	271	296	261	300	0.85
7	13	0.00024	1	9.8	0.4	23	48	301	326	295	332	0.89
8	13	0.24	9.9e+02	0.2	0.0	22	45	329	352	326	358	0.86
9	13	0.087	3.7e+02	1.6	0.1	24	44	359	379	351	385	0.83
10	13	0.0032	13	6.2	0.1	26	52	469	495	463	497	0.89
11	13	0.0018	7.6	7.0	0.0	22	48	499	525	492	530	0.83
12	13	0.017	69	3.9	0.4	22	48	529	555	525	559	0.90
13	13	0.38	1.6e+03	-0.5	0.3	27	52	591	616	589	617	0.83

Sequence Information

Coding Sequence: ATGTTCCGCATCGATGATAGATGGCCATCCAAAGCTAAACTTCAAAAACACATGTATTGTCATGATACAAATAGACAAAAAATATGCGATCAGTGTGGTAAAACATTTGCCTGCAATTCCAGTATGCGTAAGCACGTTGATGCTGAGCATTCAGAAGTTAAACCAGAACCACAACAGTGTAAAATATGCAGCACTTGGTATCGAAATAATTCTGGTTTAAGGACGCACATGAAATTTATGCATGAAAATATTGGCGGAGAACATCGTTGTCACATTTGCAACAAGGTATCAACAAATGCTAGAGCATTAAGAAGACATATTTATTTAAATCATGAATGTGAACGAAAATACAAATGTCACATGTGTGAAAAGGCATTTAAACGGGAACAAGATTTGAGAGAACATATATCGGTGCATACTGGCGAGGCATTATACACTTGCCCCAATTGTCCCATGACATTTTCCTCTAGTGCCAATATGTATAAGCATCGGCAACGTTTGCATAAAGCCGAGTATGCTGCCCATAAACAACAGCCATTGGCTTTAAATATAATCAAACAAGCAAAATCTGTACCGAATACAGTGCGTACTAAAAGACGTATGATTGTAGAACCCCCGCCACCCTCTGCAGAATTGTTAAATCCTCAGCTCTCTTTACAAATACAATTACCATCTGAAACAAAGCTACGTGAACACATGAATAGTCATGATCCAACAAAACGTCAGATATGTGATAAATGTGGTAAAACATTTAAAAATAATTACAATATGAAAAAGCATGAAGAATCAGAACATTCTGAGGTAAAACCTGAACCTCAACAGTGTACCATTTGTAATACATGGTACCGCAACATATCTGGTTTAAAGACCCACATGAAAAACATGCACGATGATGCTGGCCAAGAGCATCGGTGTGATATATGTAATAAAGTGTCTACTACTCAACGTGCCCTTAAGAGACATATTTATTTAAATCATAAATGTGAAAAGAAATTTAAGTGTAATATGTGTGACAAGGCTTTTAAGAGAGGTCAAGATTTAAGAGAACACGTATCTGTGCATACTGGAGAAGCCTTATACACTTGTCCCAATTGTCCTATGACCTTTTCTTCCAGTGCCAATATGTACAAACATCGTCAGCGTTTACACAAAATTGAATATGCTGCCTATAAACTACAAGCCATGCCTCCTAATATAATAAAACAAGCTAAATCGAGTTCTGTCAGCACATTTCGTTCCAAAAAACGCTTTGTGCGCCAGTCAAATACTGAATCTTATGAAAATTTATTGGTAATTTCACCCGAAAACAGTACCACTTTACATATGCCAATAAGTACCAGTTTATTTCCCACCAAGCGCAAAGTTGCAGCTCATTTACATGTTCACAGTACAGTATGCACTTGCATGTGTGATGTTTGCGGCAACACGTTCAAAAATAAATTTAATCTTAAAAAGCATATTGAATATCATCATTCAGAAAATCCTCGTAGAGATAAGGAACCCCAACAGTGTCCCACTTGCTCCAAAGTGTTGCTGGGAAATAAGGGACTGAGGGCACACATGAAGAATATACATGACACCGCTAAACAGGAGCATCGTTGTAAAATTTGTAATCATGTTTCTACAACAGCTAAAGGCTTACGTGTACACGAAATATTTCGTCACGAAAAAGAACGCAAGCACAAGTGCTCCTTGTGTGAGAAGGCATTTAAAAGGCCCTTGGATTTGAAAGAACATATTGCTACACACACTGGCATCTCCTTGTATAAATGCCCTGAATGTGAAGCCACATTTAAGTCAAATTCTAATTATTATCACCATCGAAGACGTTTTCATAGTGAAAAACCCAAAAGCGATTTAATGATTAAAATAGATTGA
Protein Sequence: MFRIDDRWPSKAKLQKHMYCHDTNRQKICDQCGKTFACNSSMRKHVDAEHSEVKPEPQQCKICSTWYRNNSGLRTHMKFMHENIGGEHRCHICNKVSTNARALRRHIYLNHECERKYKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPLALNIIKQAKSVPNTVRTKRRMIVEPPPPSAELLNPQLSLQIQLPSETKLREHMNSHDPTKRQICDKCGKTFKNNYNMKKHEESEHSEVKPEPQQCTICNTWYRNISGLKTHMKNMHDDAGQEHRCDICNKVSTTQRALKRHIYLNHKCEKKFKCNMCDKAFKRGQDLREHVSVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKIEYAAYKLQAMPPNIIKQAKSSSVSTFRSKKRFVRQSNTESYENLLVISPENSTTLHMPISTSLFPTKRKVAAHLHVHSTVCTCMCDVCGNTFKNKFNLKKHIEYHHSENPRRDKEPQQCPTCSKVLLGNKGLRAHMKNIHDTAKQEHRCKICNHVSTTAKGLRVHEIFRHEKERKHKCSLCEKAFKRPLDLKEHIATHTGISLYKCPECEATFKSNSNYYHHRRRFHSEKPKSDLMIKID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01427627;
90% Identity: iTF_01427627;
80% Identity: iTF_01427627;