Basic Information

Insect: Tetramorium simillimum
Gene Symbol: -
Assembly: GCA_011636635.1
Location: VBVQ01000296.1:2263-7305[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.3 36 5.6 7.5 2 23 276 298 275 298 0.97

2 18 0.016 1.9 9.7 1.4 1 23 344 366 344 366 0.97

3 18 0.29 34 5.7 0.5 1 23 415 437 415 437 0.97

4 18 0.12 14 6.9 0.1 1 19 488 506 488 508 0.93

5 18 0.0054 0.64 11.1 3.2 1 23 549 571 549 571 0.98

6 18 0.0006 0.07 14.2 0.2 1 23 617 639 617 639 0.96

7 18 0.00056 0.066 14.2 0.1 1 23 645 667 645 667 0.97

8 18 1.9e-05 0.0023 18.8 0.2 1 23 711 734 711 734 0.96

9 18 0.015 1.8 9.8 3.1 1 23 740 763 740 763 0.95

10 18 2.2e-06 0.00026 21.8 1.0 2 23 771 793 770 793 0.97

11 18 0.00021 0.025 15.6 0.0 1 23 801 823 801 823 0.93

12 18 0.19 23 6.3 0.2 1 20 883 902 883 902 0.96

13 18 0.0018 0.21 12.7 0.1 2 23 922 943 921 943 0.96

14 18 4.4e-06 0.00052 20.9 1.2 1 23 956 978 956 978 0.98

15 18 0.00029 0.034 15.2 3.0 1 23 1000 1023 1000 1023 0.93

16 18 0.0046 0.54 11.4 0.9 2 23 1084 1106 1083 1106 0.92

17 18 0.0006 0.071 14.1 1.0 1 23 1127 1150 1127 1150 0.93

18 18 0.0012 0.14 13.2 0.2 2 23 1244 1266 1244 1266 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.3	36	5.6	7.5	2	23	276	298	275	298	0.97
2	18	0.016	1.9	9.7	1.4	1	23	344	366	344	366	0.97
3	18	0.29	34	5.7	0.5	1	23	415	437	415	437	0.97
4	18	0.12	14	6.9	0.1	1	19	488	506	488	508	0.93
5	18	0.0054	0.64	11.1	3.2	1	23	549	571	549	571	0.98
6	18	0.0006	0.07	14.2	0.2	1	23	617	639	617	639	0.96
7	18	0.00056	0.066	14.2	0.1	1	23	645	667	645	667	0.97
8	18	1.9e-05	0.0023	18.8	0.2	1	23	711	734	711	734	0.96
9	18	0.015	1.8	9.8	3.1	1	23	740	763	740	763	0.95
10	18	2.2e-06	0.00026	21.8	1.0	2	23	771	793	770	793	0.97
11	18	0.00021	0.025	15.6	0.0	1	23	801	823	801	823	0.93
12	18	0.19	23	6.3	0.2	1	20	883	902	883	902	0.96
13	18	0.0018	0.21	12.7	0.1	2	23	922	943	921	943	0.96
14	18	4.4e-06	0.00052	20.9	1.2	1	23	956	978	956	978	0.98
15	18	0.00029	0.034	15.2	3.0	1	23	1000	1023	1000	1023	0.93
16	18	0.0046	0.54	11.4	0.9	2	23	1084	1106	1083	1106	0.92
17	18	0.0006	0.071	14.1	1.0	1	23	1127	1150	1127	1150	0.93
18	18	0.0012	0.14	13.2	0.2	2	23	1244	1266	1244	1266	0.96

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATCCGGAACGCGGAGAACGTCTGCAGACTGTGCCTTTCCACGGACGGGCCCAGGTCCTCGGTGTTCGCCAAGGAGAAGGACGGGGAGAAGGAGGACTCGTCCGGCGTGCCGCTGGCCGCCAAGATTCAGGCCTGCCTGTCGATTCAGattttaacaACCGATAAATTGTCTACACTGATATGTGAAAGTTGCGTGAAAAACGTTAATCAATGGCATACCTATAAGGAGTCTTGTCTGCGCACTCAGGACAAGCTGCAAGAATGGCTAGCAAATCAATTGCAATCAAATCCTAAGATTATCGTAACGATCAAGGATGAACCAATGGATGTAGATTATGAAGATAATGTAGAGATTATCTCAGAGATCACcaataatgtagaaaaatcaCAATCACCAATTCAAACAGTAGAGGACGATAACATTAGAAGTGAATCTAATACTGAGAAAGCGCAAGATGTAACAGATAACAATGATGCGAATGATACTAACAAAGACCATGAGACAGACCCACTTATAGTGGAAAAGGAGAATGACAAGGAAGAAAATCAAACGGATCAGCAAGATTCTGTAGCTTTGTGTTCCGTTAAAAGCGAGCCACAGGATGATGGCGATATCGATACTATAGAAATCGAATCCTCGAATAGTAGTGAGTTGCTATTGAATCCTATGGCAACCAGCGGGACAGAAGATACAATCATGGAAGCTGATTCCACGCAGAAGTCTAATGCGTCCGGCTTACCACctaagaaaaaattgagaCGCGGTCCTCACACCCATTTTAGAGGAACGCGTGTTTTTAAGCAGAAATGCACGCACTGCCAAATATTCCTGCACTCTAAGTACTCTTACATGAAGCACATGAAGAGATTTCACAGTAAACAAAACGGTATCGAAAATTTGGAGGACGATGACGAGATGATTGAAGATCTGGAAGATGAACTGGTCAGCATGGAAAAGGACTCATCGCTGACACAAGTCCAACAGGACATTATTAGTCAATTGAAAACTTTCTCTTGCTACTCTTGCGAACAGACGTTCAACGACAGACGCAGTACTCTGGCTCACATACGTCAACATATGCCGGATTTGAGACCGTACACGTGTATCGCTTGTCTGAGCGAATTTCCAGATCGATCAATGTATCAGTTACATTGCGGCGCGTCCTTCGAATGCGCCATGAAGATCGCCTTAGTGATACCGAAACACGGTAGCGAACGATACTTTACATGCAACATGTGTCTGCGCTCGATGCCAGGTAGGAAGGAGTTGCTCAGCCACTTATCGAGACACTCTGACAAACAGTACGAGGAGATGATGTCGCCAATGCGGGCACCGCCAAAACTGAAGCCAATGGCGCCGTTGCCACCGAAAAACAGCATTATTGAGAGGACAAACAGGATTATGAGCGGACCCTACAAGAACGGCGATCCGGCGCATAATCATGCCTGCGATCTGTGTGGTATGATTTACCGATACCGCCCGAATATGCTCAAGCACAAGGTGCTTTGCATGCGAGTGGATCCAGAAAACAGAACATTGTACAGATGCGTACATTGTTTCATGACGTTCATCGTATTCAAGAAGTTCCACTATCACGTCACGGCCGAGCACAAGAAGAAAGATTTTACTTGTTCCATATGCTTTTCCCAATTTCGTTCGCCCAGTGACTTCCTGACCCATCATGAGACCCATCGCACGACAATGCAAGATAATCAACAAATGCAGCATGATGGTACCTCGCAGAATGTTCAAGCACCACTGAAGGAACGCAACGCATACGAAACAAATGCCAAGTCGAGAATCAGCTCGCGAATGTCAAGTCAGAAGTACAGCTGCCCCCTTTGCGCCCAGGAGTTCTCCACAAGAGCTGAGCTGAACGAGCATCGGACTCTCCATCTCAAAGTGAAGATATACTCGTGTGCCATTTGTCGTAGTATGTTCAGCAGTGCCGGCGCCTTGGAGATTCATATGAAAGATCACGGAATCGAGGACCCGAATGAAAGAAACGCCAATATTTCCTGCGTGGAATACGGCACCTTGGACGAAGACGTGAGGATCGAGAAAGATGCGATGAATGCTAGTTCCATCTCGGATCCTGGTACGCAAGTTCATGAGTGTGGCGAGTGCGGTAAGGTACTATCAAGTTACGCTAATCTTCGGCGACATGCTAAGATCGCTCATCGGAATTGTAAGATGTACGATTGTGTCAAGTGCTCACGTATGTTCATGCGTAAAGATCTGTACGATCACCATATGCAACTCAAGCACAACTCTACCAAGACAATGCTACAGTGTCCGCAATGCCCCAAGAGTTTCGTCTTCCAATCAAACTTCACCTCTCACTTCCGTACTGCCCACGTCGAGAAATCGCAGAATGGTTATGCCTGCGATATCTGCGGCAAGGTCTTCGAAGAGGAAGCTTCTTTGAAAATACACAGAGGCTGGCACAATCGTGCAAACTCGCGTCTGAGTACTCGATTCATATTAGGCAATCGGAAGACGTCCAATAGCGCGCAGAAAGAATCTAGTAGTGTCGAGTCTGGTGAGAATTCAGAACGGCCGGCGAGAGCACGTAAGTCTTTCCCTAATCCTCCACCTCAATCGCCAGTGAAGACGTCGGGAAATTTCCAGTGTCAAGTATGCAATGACAAATTTAATGATGTTATCGAGCTAAGAACCCATCTGTGGGACGTCCACTGCGCTCGTAACAAAGCTGAGAAAAGTTTCTCCAATGATGAGCTTCAATGCGAACTCTGCACAAACATTTTCCCCGATCAGGAAACCCTGGCATCTCATATGCAATGGCACAAGGCCAATCCTATTCTTAGCAACATACAAAAGACATTCACCTGCGAGATATGTGGCAAGTCTTACAGTTCGAAGAAGGTTCTATGGAAGCACAAGAGGCTTCACAAGGCTACGGTTGTAGCCTCGATCAAGTTCCAGTCTTTAGCCAGAAAACCGATGGCTTCACAATTCCTGTGCACCTTTTGCCGTAAGGTCTTCTCGAGCAGCCAGTCTCTGCAACGGCACAAACTTTCCTTTCACAGTGATTTACAGATACAGGCCCAACAACGCGCTCAGCAACAATTGTACAATAGCAATCGAGCGCCGTTCGAGGACGAGCCGAGACCAAAGCGCTTGAAGTTTGAGGTCGACAGTGATAATCCGCCAACCAAGTTGTCGCCTTTCGCCATGGACTTCGCTGGTGAGAAAAGAAAACCGGTCATGTGCCACGTTTGCAAGAAAATGTTCCCCAATATGAGCGTGCTGTACAAGCATAAGCAAGCGGTCCACAAGCCCCGTGCAAAAAAAGACGTGCCCGAATGCATTCCGATGTCGACTCAGGATGGCAAGTTTTCATGTAACATCTGCTTCAAGGAATTTCCCGGTCTGTCGAATCTGCGACAGCATTTCACGATCAAACACAAGAAAACAGCCGCTGTAGCCGAACCCGCTAGCATGCCGAGAAATGACAGAGTGGAGCAGCTCCCGCCGTCACCCGAACGGCTAAGACCGGACTACGAGATGGCCTACAATAATGTGATGTACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAATAAAGAATCCATCACGAGCCATATCACCAATGTGCACAACGCAGTGTATCAGGCCGACAGTAAGACGTTCCATAGGGAGATCAATCTGAGCACTTACTCAGTGAAGCACGCGATCGGAGCTACTTGTCCGGAATGTGACGTTAAATATCCTAACAACAGAGCTCTGAAGATACACTATATTAAGTTCCACGAGAATGCCGATTAA
Protein Sequence: MDEDVVEIRNAENVCRLCLSTDGPRSSVFAKEKDGEKEDSSGVPLAAKIQACLSIQILTTDKLSTLICESCVKNVNQWHTYKESCLRTQDKLQEWLANQLQSNPKIIVTIKDEPMDVDYEDNVEIISEITNNVEKSQSPIQTVEDDNIRSESNTEKAQDVTDNNDANDTNKDHETDPLIVEKENDKEENQTDQQDSVALCSVKSEPQDDGDIDTIEIESSNSSELLLNPMATSGTEDTIMEADSTQKSNASGLPPKKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYSYMKHMKRFHSKQNGIENLEDDDEMIEDLEDELVSMEKDSSLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLAHIRQHMPDLRPYTCIACLSEFPDRSMYQLHCGASFECAMKIALVIPKHGSERYFTCNMCLRSMPGRKELLSHLSRHSDKQYEEMMSPMRAPPKLKPMAPLPPKNSIIERTNRIMSGPYKNGDPAHNHACDLCGMIYRYRPNMLKHKVLCMRVDPENRTLYRCVHCFMTFIVFKKFHYHVTAEHKKKDFTCSICFSQFRSPSDFLTHHETHRTTMQDNQQMQHDGTSQNVQAPLKERNAYETNAKSRISSRMSSQKYSCPLCAQEFSTRAELNEHRTLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGTLDEDVRIEKDAMNASSISDPGTQVHECGECGKVLSSYANLRRHAKIAHRNCKMYDCVKCSRMFMRKDLYDHHMQLKHNSTKTMLQCPQCPKSFVFQSNFTSHFRTAHVEKSQNGYACDICGKVFEEEASLKIHRGWHNRANSRLSTRFILGNRKTSNSAQKESSSVESGENSERPARARKSFPNPPPQSPVKTSGNFQCQVCNDKFNDVIELRTHLWDVHCARNKAEKSFSNDELQCELCTNIFPDQETLASHMQWHKANPILSNIQKTFTCEICGKSYSSKKVLWKHKRLHKATVVASIKFQSLARKPMASQFLCTFCRKVFSSSQSLQRHKLSFHSDLQIQAQQRAQQQLYNSNRAPFEDEPRPKRLKFEVDSDNPPTKLSPFAMDFAGEKRKPVMCHVCKKMFPNMSVLYKHKQAVHKPRAKKDVPECIPMSTQDGKFSCNICFKEFPGLSNLRQHFTIKHKKTAAVAEPASMPRNDRVEQLPPSPERLRPDYEMAYNNVMYSCKLCKQCHVFNKESITSHITNVHNAVYQADSKTFHREINLSTYSVKHAIGATCPECDVKYPNNRALKIHYIKFHENAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765843;
90% Identity: iTF_01422403;
80% Identity: -