Tsim003200.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- -
- Assembly
- GCA_011636635.1
- Location
- VBVQ01000772.1:38203-46311[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-13 1.6e-09 37.8 0.3 10 70 288 346 283 350 0.86
Sequence Information
- Coding Sequence
- ATGGACGGCGCGAACGTGAATGGCGGGAACGCCGCGGCACCGCGCGAGGATTCTAACCTCGAAAGTGGCGGCGTTAGCGACGGcagtggcggcggcggtggtggtggtggtggtgcgGTGGTCGTGCCGACGATGGAGGCGCAGGACTCGAGCGACAAGGCGCAACTGACGGCCGCCGGCAACGCGGACGCGCAGCAGGAGGTTAACGGCGAGCTGAGAGGCACGCCCAGGAAGCACGGCGCGCCGCTGCCCCGCAGGAGGCTGAGGAAGTTCAAGGCCAACTCCACGGGCGCGATGGAGAGCGACGCGACGACGGAGATGCCCGGGACGAGGGGGCGCAAGCGCAAGCTCTCGGAGTATGAAGACGCCAGCTCCGAGGAGTCCGAGGAGTTCAACGGCTTCGACTCCCAAGGCCTCGACGTGCAGCCGGGCAGTCACGTTTTGAGCAAACTCATTGCTGAAGCAGAAATAGCAGAAGCGCAACTTGCAAAACGTATGAAATATTCATCGAAGGCTTTCGACGCGAGAGAAAAGATGGACGATAATCAAGATTTCGATGACATGAGAACGTATGTTTATGAAACGGATAGTTTTGAGCATTTGGATATgacaaagattaaaaaagaaaaggagtcTGATAAATCAGAAACAGATTCTATTGATATACCAAATAGCATAGATTCTGAAATTGAGCcaaacaaaattgatataacttCCATTAGATCGGCGAATTCGTCGTCGGCTGCGAGTAGTCCCTCTGCTACGTCGCAAAGATCAAAAGGTAGCCTCGTTTCTGGTGGTGCAAGTCCAGGGGGGAAGCAGAAAGCTCCTGTTGATATGTCAAATCCTTTATACAAAGAGCCATTTAAGTATGGATGGAAACGAGAATTAGTGTTTAGAGCTAGTCATGACTCTTCCTTCAAAAAAATGGCTGATATATATTACTACACACCAAAGGGGAAAAAAGTAAGGAGTTTTAGAGAAGTTGCAGAATCTCtTAATTCAAAGGAGTTGACTATTgacaattttacattctttaaaGAACCTATTGGGCTTAATGATCCTGAAAAGGAGGTCATTCGAGATGCTAAAAGAATGCGCGGTGGATCTATGGGTGGAGgttcagtaaaaaaatatagtaaaaaaccTGTGTCAGTAAAAAAGACAGTACAGGAACCTGTAAAAAAACCAGAACCTGCAACAAGAAAATCGTTACATGAACCTAGCACATCAAGAAAACAGCCGGCACAAGAATCTCCTGCTTCTGCACCTGCACCTACACCTGCGGAAACTGCAAAACTTGTTCCTGCGCCTGTGTCAATACCTACAAAAGCAACTAAATCGGCAAAAGCATCTCCAGCGTATAAAAAGACAATAACAAAGAAAACTCCTCAGATAAAAATGAAAACGCCAGCCGAAGAAAGCGAGATGCTTCCACCTCAGCGAAGTACAGCAAATACGAGAAGAAGCCAACAATCAGTTGAGAAAGTTATACCGGTCAAAACCAAGAGATTGCTAACGCCCAAAGTTCAAGAGCCATGCAGCATAAGATGTTCGACAAGTATGGGATTAATACCAAGTTTACAATGTCGAGTTTGTCTCTGTTTATATCATCCTGAATGTGTCGATGGCATGGAATTTGCAGGCAATGATGAATATGTCTGCAAGAATTGTCAGCCGGATACTAAAGAATCTCATATGCCAAACAATCCGTCTTTAACACCACCTCCATTGATTCCAATTAGTATGTTAGGTGCACAAAATACGAAATCAAAACATCAGACTAATTCATCTCCTCCGAAATTGCAAAGAATTCCAAAGTCTGAGGGTGTGGAACCGCAAACGAGAAATTCTTCCAAAACTACCAAAATACCATCTTCAGTACCAAATTCACCCTCAACTGTAGACAAAAAGGAAAGTTGTTGGTTTCCTCAAACGGAAAATGAATTTCTGCAAAGTCACGATGGCACGATGCCGAAACCCGCCCAAAATATCGCTGTAATGGGCGGCAAAAGATACATTGTAGTAccaaaaaataatgcaatggCAGTTCAACCGGCTATAACGGTAAAACCAGATAAAATTGGTGATAAACCGCCGATGCTTCAAGACGGTTTACTTAGCGACATTTCGAATACCGCAGATAATTCCACAGCAAACTTATGTGCACCTCCATCCTTAAATACTGATTTACCTGAAAAAATAGATGTTACACCtgataaagaaatttcaaaagatGCGATTCATCAGACAGATGACATTGTATCTTCTATTACCACTGAAATGACTGAAACGactgaaacatttatatatgataataaagataagGATAGCAAAAATACTCCTAAAGGAGATAATCCtgaaaatttatcagaaaacGAATCTTTCACTGCCAGTATAGATTATGTttcagaaaaagaaacagtAGATACAAATTGTAAATCACCTGAAAGTAAATCTACATCAACATCAGAACTTACAGCAATTATCACAAGTGCTCTTGAAGCAAATGTGGAAActgaaacaattaaaacagATCGACAACAATCGTTACCAAGTAAAGTGGGTACAGTAATAAAAACTAGATATAGCAAgAGGAAGCAAAATCAACAGGAATTAGAGCAACAGCAAAATTTCATGAATTCAGTGTGCGCCGGTTATCATGCGTTGCTGCGTATTTTCCAATACCTTAAGGTCCAAGAGTTATTGCGAGCCGCGCGAGTTTGTAAAATGTGGCGTGATCTCGCTGCACATCCATCTTTATGGAAGACTGTACGAATGAAGAACAGTCAAGTAACTGATTGGGATGGTTTGGCGGATACGTTACAGAGACGCGGCACGCAGCATCTAGATCTCAGGAAAATGCTAATAGCTGGCGAGTCCGACAACATCTGGAAGAAATTCCTGACTGTCATACCACGAGTGACCAGTCTCGTGAAGCTTGAACTATGTAGATGTCCCGTTATAGTTGTGGAGGAAGTTATTAAAAGCTGTCCACAGTTGGAGGTATTCAGTGCAATGTCGATCAAGTGTGACTCTCTCACATTAGAGTCGATCGGGAACTTGAGTCGATGTCAAGAACTCAGACTTAAAGCAATAACTGGAATGTCATTACAACAAGATCTTACGCCTCTACAGGACTTGAAGCACTTGACACAGTTGAGTTTAACATCAGTTAAAGAACtcgggaagaaaaaaattgatgttatACAAGCATTGACAAACTTGGAGACGTTAGAATTGGGCGAATGTTCCGACTTTCCCGACAAGTTTGGAACTACcgttttaatcaatttaaataaattggaacGTCTTAGACTTGAAAAAGGTCAAGGATCTTGTTGTACATTTGATATCCTCGAAGGTGTATCAAAATTGGAAAACTTGAGTCAGATGGAATTGGTCAATTTTGACGTAAAGAATGGCTTTGACAAATGCCTTGCTAATTGCAAAAACATCAAAaggttattaattataccgaCTTACATATCGCAATCGGCGACATCCAATAACATGGTGCTTGGAGGTGTCACAGAATTATCAGATAATTTGACGCATTTTATATGGGGCGTTACGCTCGAGTTACTCAGGGTCACAGAACTGTTCGTTGATCAGTGCAACCTCATGAGTAAACAGGTTACTGGGGATTCTATACCTGTTTTAAAACCTGTTCCCTGCTTAAGATTAATTGAGGATGTCGAAGATGAGAACGAGAACCAAAAAGGTGATGACAAGCAACAGCCACACCTAACGAGTCCGCAAGTCGACATTTTACCGTTGCCACAATTGCAAAAACTTCTTTTAACCGCATTGCCCAAGACTCGAGTCAAGATCTTAAAAATTCCCTTTCACGCCACGTGGCGGCAGAGCATTTCCGATACAACCACGCAGTAG
- Protein Sequence
- MDGANVNGGNAAAPREDSNLESGGVSDGSGGGGGGGGGAVVVPTMEAQDSSDKAQLTAAGNADAQQEVNGELRGTPRKHGAPLPRRRLRKFKANSTGAMESDATTEMPGTRGRKRKLSEYEDASSEESEEFNGFDSQGLDVQPGSHVLSKLIAEAEIAEAQLAKRMKYSSKAFDAREKMDDNQDFDDMRTYVYETDSFEHLDMTKIKKEKESDKSETDSIDIPNSIDSEIEPNKIDITSIRSANSSSAASSPSATSQRSKGSLVSGGASPGGKQKAPVDMSNPLYKEPFKYGWKRELVFRASHDSSFKKMADIYYYTPKGKKVRSFREVAESLNSKELTIDNFTFFKEPIGLNDPEKEVIRDAKRMRGGSMGGGSVKKYSKKPVSVKKTVQEPVKKPEPATRKSLHEPSTSRKQPAQESPASAPAPTPAETAKLVPAPVSIPTKATKSAKASPAYKKTITKKTPQIKMKTPAEESEMLPPQRSTANTRRSQQSVEKVIPVKTKRLLTPKVQEPCSIRCSTSMGLIPSLQCRVCLCLYHPECVDGMEFAGNDEYVCKNCQPDTKESHMPNNPSLTPPPLIPISMLGAQNTKSKHQTNSSPPKLQRIPKSEGVEPQTRNSSKTTKIPSSVPNSPSTVDKKESCWFPQTENEFLQSHDGTMPKPAQNIAVMGGKRYIVVPKNNAMAVQPAITVKPDKIGDKPPMLQDGLLSDISNTADNSTANLCAPPSLNTDLPEKIDVTPDKEISKDAIHQTDDIVSSITTEMTETTETFIYDNKDKDSKNTPKGDNPENLSENESFTASIDYVSEKETVDTNCKSPESKSTSTSELTAIITSALEANVETETIKTDRQQSLPSKVGTVIKTRYSKRKQNQQELEQQQNFMNSVCAGYHALLRIFQYLKVQELLRAARVCKMWRDLAAHPSLWKTVRMKNSQVTDWDGLADTLQRRGTQHLDLRKMLIAGESDNIWKKFLTVIPRVTSLVKLELCRCPVIVVEEVIKSCPQLEVFSAMSIKCDSLTLESIGNLSRCQELRLKAITGMSLQQDLTPLQDLKHLTQLSLTSVKELGKKKIDVIQALTNLETLELGECSDFPDKFGTTVLINLNKLERLRLEKGQGSCCTFDILEGVSKLENLSQMELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSDNLTHFIWGVTLELLRVTELFVDQCNLMSKQVTGDSIPVLKPVPCLRLIEDVEDENENQKGDDKQQPHLTSPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDTTTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01523359;
- 90% Identity
- iTF_01422930; iTF_01422234; iTF_01421558;
- 80% Identity
- -