Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: stc_1
Assembly: GCA_011636605.1
Location: VBVP01001833.1:26413-32763[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.5 2e+04 -3.7 1.1 15 19 462 466 461 466 0.82

2 14 0.13 1.7e+03 -0.3 0.1 4 10 495 501 494 502 0.94

3 14 3.2e-06 0.042 14.4 12.5 3 18 511 526 510 527 0.92

4 14 2.7e-09 3.6e-05 24.2 16.7 1 18 563 580 563 581 0.98

5 14 5.2e-05 0.69 10.5 11.5 1 19 619 637 619 637 0.92

6 14 0.98 1.3e+04 -3.1 0.7 5 10 666 671 666 671 0.94

7 14 0.00092 12 6.6 12.4 4 18 684 698 677 699 0.85

8 14 2 2.7e+04 -4.6 1.6 5 10 728 733 728 733 0.90

9 14 0.0082 1.1e+02 3.5 11.3 1 11 739 749 739 761 0.88

10 14 1.3e-09 1.7e-05 25.2 10.9 1 19 766 784 766 784 0.98

11 14 0.34 4.6e+03 -1.7 0.6 5 10 812 817 810 817 0.95

12 14 2 2.7e+04 -6.8 8.7 10 18 831 840 820 841 0.78

13 14 9.5e-07 0.013 16.1 10.2 1 16 877 892 877 903 0.85

14 14 3.6e-06 0.048 14.3 12.6 1 19 909 928 909 928 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.5	2e+04	-3.7	1.1	15	19	462	466	461	466	0.82
2	14	0.13	1.7e+03	-0.3	0.1	4	10	495	501	494	502	0.94
3	14	3.2e-06	0.042	14.4	12.5	3	18	511	526	510	527	0.92
4	14	2.7e-09	3.6e-05	24.2	16.7	1	18	563	580	563	581	0.98
5	14	5.2e-05	0.69	10.5	11.5	1	19	619	637	619	637	0.92
6	14	0.98	1.3e+04	-3.1	0.7	5	10	666	671	666	671	0.94
7	14	0.00092	12	6.6	12.4	4	18	684	698	677	699	0.85
8	14	2	2.7e+04	-4.6	1.6	5	10	728	733	728	733	0.90
9	14	0.0082	1.1e+02	3.5	11.3	1	11	739	749	739	761	0.88
10	14	1.3e-09	1.7e-05	25.2	10.9	1	19	766	784	766	784	0.98
11	14	0.34	4.6e+03	-1.7	0.6	5	10	812	817	810	817	0.95
12	14	2	2.7e+04	-6.8	8.7	10	18	831	840	820	841	0.78
13	14	9.5e-07	0.013	16.1	10.2	1	16	877	892	877	903	0.85
14	14	3.6e-06	0.048	14.3	12.6	1	19	909	928	909	928	0.97

Sequence Information

Coding Sequence: ATGGCCACCTGGGACGGCTCGTATCCAGAGGACTTGAACTATTTGGTCGACGCCGCGTACCTGAGCGCATACATACCTGCGGGCAGCTACTATCCGGGAAGCGGGAGCGGACCAGCGGCAACCTTCTACCAGGTGGACGCCCAACACCCGTCGAACATGGTGCCTTTGGAGAACAATGCCTATCAGGAACGTGCACTGCCAAACGACGCGCGAGCCGCGCCGGGCGACGTCGCCGCGGCGTTGCGCAACGCGGCGCCCCACGGGCCCCGCGGTGGTGGTTACAAGCCGAGGCAATCCCGGGGCAACCGGGCGGCCGGCAAGCACGcggcgccgccgccgtcgtctgCGAGCGACGTCGTCCAGTCCACCGTGGTGGAGAACTCCAATCTACATCCCATGGCCAGCGAGTTCGTGCCAAACAGCCAGCAGGTAAAGAGCTTCCGAAGAGATCCGAGACACAGGAGGTATGACAATGGCAACGCGACTGGGACGAGCGGTTTCAACGCCTACGCGCAGGAGTTCAGGCCGAAGCCGGCCGACAAGTCGTCCATGGACAATAGGTACAGGAATGAGAGACGCTACGATAACAGAAGAGACGCGAATTACAGGCAGAAGCGGCCGCAGGACACGCAGGCACCGAGATCTGGCTACAGGGACACTCAGAGGACGTACAACGCGAGAAACTACAATAAGTTTCAGAATGGCAGATATTACAATAGGAAGTATCAGCTGGACGCGGAGCAGAGTGCCGCCGGGGAGGCTCAGACGTTCACGGCTGAGGCTGTGGACTCGACCACATCCAGCAGTCAGGAAAATAAGGCTGTTACTGAAGAGATACAAGAGGACGACTCGGTTCTGGGTACGAAGACCGGTAGACGCAGAGAGGAGTCGTCAACGTACGAGGATACCGATTCGGAAAATGTGTCCTCGAAAATTCTTGAAGCGCAACGAAACGGTAGACCTAAACGATTCGCTAACGCGTCCAGTTATTACAGATACAATTCAGACGATATGCAATTCGAACCTGCTGCGAGGCGAAAAACAGTAGCGACAACGGCAAGATATCCGCAAAGGCGAAACGAAATGGCGAGTTACAGGGAAAAGAAGGTGGAAAATTGGAGAGATAGAATGGAGAATAATGAGACGACGCAAGCTCCGCAGGGAAAAAAtccgaagaaaaaatatgacattgATGATGACGCGAGTCAAAGGGAAAGATTAACTGAACAGTTGGACAAGGGATTGTTGGAGTGTCTGGTCTGTTACGAGCATATCAAGCAGAGCGACTACGTTTGGTCTTGCGGCAATTGTTATCACGTGCTGCATCTGagatgcataaaaaaatgggCAAAGTCATCTCAGAGCGAAAATAACAGCTGGAAATGCCCAGCTTGTCGGGACGTCAGTTTTCTCGTGCCTGAAGAATACTTCTGCTTCTGCGGGAAGATGAAGATGCCGGAATGGAATCGTAGGGACGTAGCGCACTCGTGCGGCGAAATCTGCGGCCGGCTTCTGTCCAAGAACAATTGCACGCATAAATGCACCTTGCTCTGCCATCCCGGCTCTTGCCCCCAATGTATGGCGATGGTGACCAAGTATTGCGGATGCGGGAGAACGTCGAAGATGCTTCTGTGTAGCGCTCATCAGTTGTTGATGTGTGATTCGATATGCGGGAAAGATCTGTCGTGCGGCAAGCACACCTGCCAGAGGACGTGCCATCAGGGAGAATGCGGGCCTTGCGACAAGATTGTGaaacaaaCATGTTTTTGTAGTAAGAATACTCAGGAGGTACCCTGCCGAGCCAATACTGCAGATACATATTCCTGtgataatatttgtaacaaacCGTTGGACTGCGAGAAACATTATTGTCAGAAAGTCTGTCATCCGGAGCTCTGCGAGCCTTGTTCCTTGACGCCTGAAAAAGTTACGATGTGCTGTTGCGGCCAAACGCTGTTgacggagaagagagagagctgcACGGATCCCGTGCCGACTTGCGATAAAATCTGCTCGAAGCGCTTGAAATGCGGCCAGCCTAGTAATCCACACACCTGCAAGGCACCGTGTCACGTGGAAGAGTGTCCGGATTGTGACTTGAACACTGACGTCAAGTGCCGATGCGGTAACATGGACCGCGAGATCGCTTGCAGAGACCTGACGACCAAGGCCGACGACGCGCGCTGCGAGAAACGCTGCAAGAAGAAAAGATCCTGTGGCAAGCACAACTGCAATCAATTGTGCTGCATCGATATTGAGCATATCTGCCCGTTGCCGTGTTCGAAGAACTTGAGCTGCGGACGCCACAAGTGCCAGGAGAGGTGTCATATGGGAAGATGTGCGCCTTGTTGGGAAAGCAGCTTCGAAGAGTTGTACTGCGAATGCGGCGCTGAGGTGATTTATCCGCCAGTACCATGCGGCACTAGGAGGCCTACTTGCAACCGACCGTGCTCGCGCGAGCATTCCTGCGACCACGAGGTGTTACACAACTGTCACAGCGAGCCTACATGTCCACCTTGCGGTGTCCTGACCCAGAGGTGGTGCCACGGCAATCACGAACTGAGGAAGGCAGTACCGTGCCACGTGAACGAGATCTCGTGCGGTCTGCCGTGCAACAAGCCGCTGTCGTGCGGACGGCATAAATGCATCATAATGTGCCACGCCGGACCCTGCGAGAGATCCGGACAGCAATGCATGCAACCTTGCACTACGACGAGAGAGTTGTGCGGGCATATCTGCGCTGCTCCGTGTCACGAAGGCAAGTGTCCAGATTTGCCTTGCAAAGAGATGGTTAAGGTTACATGCCAGTGCGGACATAGAACCATGAGTCGTGTCTGTGCTGATAATGCGCGGGAATATCAGAGGATAGCAAGCAACATATTGGCTAGTAAGATGGCTGATATGCAACTTGGTCACTCTGTTGATTTGGAAGAAGTATTCGGACAAGGCGCGAAAAAGCAGAATCAGTTGAAGACTTTGGAATGCAACGACGAATGCAAGATAATAGAAAGAAACAGGAGGCTGGCATTGGGACTGCAGATCGTCAATCCGGACTTGAGCGGCAAACTGATGCCCAGATACAGCGATTACATGAAACAGTGGGCCAAGAAAGATCCGCACTTCTGCCAAATGGTCCATGACAAGTTGACGGAGTTGGTACAGCTGGCGAAGACATCCAAGCAGAAATCTCGGAGTTACTCGTTCGATATTATGAACAGAGAAAAGCGTCATTTCGTGCACGAGTCGTGCCAGCATTTTGGCTGCGAAAGTCAAGCGTATGATGAGGAGCCAAAGAGAAACGTCGTTGCCACTGCCGTAAAAGATAAGTGTTGGATGCCAAGCTACAGTTTATTAGAAATGATACAAAGGGAGAAGGGACAAAGGAAGGTTCCAGGTCCGGTACTCAATACTTTAAAGGGAAATAATTCTACAAAgACTGTTTCATTACCTATAAAACAGAATCAGCAATCGCTGCCATCATCGTCAACTGCTAAAATTGCTGACaaagaaatagattattttgattatcgAGGTTAA
Protein Sequence: MATWDGSYPEDLNYLVDAAYLSAYIPAGSYYPGSGSGPAATFYQVDAQHPSNMVPLENNAYQERALPNDARAAPGDVAAALRNAAPHGPRGGGYKPRQSRGNRAAGKHAAPPPSSASDVVQSTVVENSNLHPMASEFVPNSQQVKSFRRDPRHRRYDNGNATGTSGFNAYAQEFRPKPADKSSMDNRYRNERRYDNRRDANYRQKRPQDTQAPRSGYRDTQRTYNARNYNKFQNGRYYNRKYQLDAEQSAAGEAQTFTAEAVDSTTSSSQENKAVTEEIQEDDSVLGTKTGRRREESSTYEDTDSENVSSKILEAQRNGRPKRFANASSYYRYNSDDMQFEPAARRKTVATTARYPQRRNEMASYREKKVENWRDRMENNETTQAPQGKNPKKKYDIDDDASQRERLTEQLDKGLLECLVCYEHIKQSDYVWSCGNCYHVLHLRCIKKWAKSSQSENNSWKCPACRDVSFLVPEEYFCFCGKMKMPEWNRRDVAHSCGEICGRLLSKNNCTHKCTLLCHPGSCPQCMAMVTKYCGCGRTSKMLLCSAHQLLMCDSICGKDLSCGKHTCQRTCHQGECGPCDKIVKQTCFCSKNTQEVPCRANTADTYSCDNICNKPLDCEKHYCQKVCHPELCEPCSLTPEKVTMCCCGQTLLTEKRESCTDPVPTCDKICSKRLKCGQPSNPHTCKAPCHVEECPDCDLNTDVKCRCGNMDREIACRDLTTKADDARCEKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKNLSCGRHKCQERCHMGRCAPCWESSFEELYCECGAEVIYPPVPCGTRRPTCNRPCSREHSCDHEVLHNCHSEPTCPPCGVLTQRWCHGNHELRKAVPCHVNEISCGLPCNKPLSCGRHKCIIMCHAGPCERSGQQCMQPCTTTRELCGHICAAPCHEGKCPDLPCKEMVKVTCQCGHRTMSRVCADNAREYQRIASNILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKIIERNRRLALGLQIVNPDLSGKLMPRYSDYMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDIMNREKRHFVHESCQHFGCESQAYDEEPKRNVVATAVKDKCWMPSYSLLEMIQREKGQRKVPGPVLNTLKGNNSTKTVSLPIKQNQQSLPSSSTAKIADKEIDYFDYRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00385965;
90% Identity: iTF_01423330;
80% Identity: -