Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: -
Assembly: GCA_011636605.1
Location: VBVP01000394.1:5191-11352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.36 49 5.2 7.9 2 23 273 295 272 295 0.97

2 18 0.014 1.9 9.7 1.4 1 23 344 366 344 366 0.97

3 18 0.97 1.3e+02 3.9 1.1 1 23 415 437 415 437 0.97

4 18 0.082 11 7.2 0.1 1 20 485 504 485 506 0.92

5 18 0.017 2.4 9.4 3.5 1 23 546 568 546 568 0.98

6 18 0.00081 0.11 13.6 0.4 1 23 614 636 614 636 0.96

7 18 0.00049 0.066 14.2 0.1 1 23 642 664 642 664 0.97

8 18 1.7e-05 0.0023 18.8 0.2 1 23 708 731 708 731 0.96

9 18 0.013 1.8 9.8 3.1 1 23 737 760 737 760 0.95

10 18 1.9e-06 0.00026 21.8 1.0 2 23 768 790 767 790 0.97

11 18 0.00018 0.025 15.6 0.0 1 23 798 820 798 820 0.93

12 18 0.17 23 6.3 0.2 1 20 880 899 880 899 0.96

13 18 0.0015 0.21 12.7 0.1 2 23 919 940 918 940 0.96

14 18 3.8e-06 0.00052 20.9 1.2 1 23 953 975 953 975 0.98

15 18 0.00025 0.034 15.2 3.0 1 23 997 1020 997 1020 0.93

16 18 0.015 2 9.6 0.6 2 23 1081 1103 1080 1103 0.91

17 18 0.00052 0.071 14.1 1.0 1 23 1126 1149 1126 1149 0.93

18 18 0.0011 0.14 13.2 0.2 2 23 1239 1261 1239 1261 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.36	49	5.2	7.9	2	23	273	295	272	295	0.97
2	18	0.014	1.9	9.7	1.4	1	23	344	366	344	366	0.97
3	18	0.97	1.3e+02	3.9	1.1	1	23	415	437	415	437	0.97
4	18	0.082	11	7.2	0.1	1	20	485	504	485	506	0.92
5	18	0.017	2.4	9.4	3.5	1	23	546	568	546	568	0.98
6	18	0.00081	0.11	13.6	0.4	1	23	614	636	614	636	0.96
7	18	0.00049	0.066	14.2	0.1	1	23	642	664	642	664	0.97
8	18	1.7e-05	0.0023	18.8	0.2	1	23	708	731	708	731	0.96
9	18	0.013	1.8	9.8	3.1	1	23	737	760	737	760	0.95
10	18	1.9e-06	0.00026	21.8	1.0	2	23	768	790	767	790	0.97
11	18	0.00018	0.025	15.6	0.0	1	23	798	820	798	820	0.93
12	18	0.17	23	6.3	0.2	1	20	880	899	880	899	0.96
13	18	0.0015	0.21	12.7	0.1	2	23	919	940	918	940	0.96
14	18	3.8e-06	0.00052	20.9	1.2	1	23	953	975	953	975	0.98
15	18	0.00025	0.034	15.2	3.0	1	23	997	1020	997	1020	0.93
16	18	0.015	2	9.6	0.6	2	23	1081	1103	1080	1103	0.91
17	18	0.00052	0.071	14.1	1.0	1	23	1126	1149	1126	1149	0.93
18	18	0.0011	0.14	13.2	0.2	2	23	1239	1261	1239	1261	0.96

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATCCGGAACGCGGAGACCGTCTGCAGACTGTGCCTTTCCACGGACGGGCCCAGGTCCTCGGTGTTCGCCAAGCAGGAGGACGGGGAGAAGGAGGAGTCGTCCGGCGTACCGCTGGCCGCCAAGATTCAGGCCTGCCTGTCGATTCAGattttaacaACCGATAAATTGTCTACGCTGATATGCGAAAGTTGCGTGAAAAACGTTAATCAATGGCATACCTATAAGGAGTCTTGTCTGCGCACTCAAGAGAAGCTGCAAGAATGGCTAGCAAATCAATTGCAATCAAATCCTaagATTATCACGATCAAAGATGAACCAATGGATGTAGATTATGAAGATAATGTAGAGATTATCTCAGAAATCACcaataatgtagaaaaatcaCAATCACCAATTCAAACAGTAGAGGACGATAACATTAGAAACAAATCTAATATTGAGAAAGCGCAAGATGTAACAGATAACAATGATGCGAATGATACTAACCGTGAGACAGACTCACTTACAGTGGAAAAGGAAACTGACAAGGAAGAAAATCAAACGGATCAGCAGGATTCTGTAGCTTTGTGTTCCGTTAAAAGCGAGCCACAGGATGATGGCGATATCGATACTATAGAAATCGAATCCTCGAACAGTAGTGAATTGCTATTGAATCCTATGGCAACCAGCGGAACAGAAGATACAGTCATGGAAGCTGACTCCACGCAGAAGTCTAATGCGACCGGTTTACCgtctaaaaagaaattgagacGCGGTCCTCACACTCATTTTAGAGGAACGCGTGTTTTTAAGAAGAAATGCACGCACTGCCAGATATTCCTGCACTCTAAGTACTCTTACATGAAGCACATGAAGAGATTTCACAGTAAAGAAAACGGTATCGAAAATTTGGGGCAGAACGATGATGACGAGGAGATGATTGAAGATCTAGAAGATGAACTGGTCAGCATGGAAAAGGACTCACCGCTGACACAAGTCCAACAGGATATTATTAGTCAACTGAAAACTTTCTCTTGCTACTCTTGCGAACAGACGTTCAACGATAGACGCAGTACTCTGGCTCACATACGTCAACATATGCCTGATTTGAGACCGTACACGTGTGTCGCTTGTCTGACCGAATTTCATGATCGATCAATGTATCAATTACATTGCGGCGCGTCCTTCGAATGCGCCATGAAGATCGCCTTAGTGATACCGAAACATGGTAGCGAACGATACTTTACATGCAACATGTGTCTGCGCTCGATGCAAGGTAGAAAGGAGTTGCTCAGCCACTTATCGAAGCACTCTGACAAACAATATGAAGAGATGATGTCGCCAATGCGAGCACCGCCAAAGCTGAAGCCAATGGCGCCGTTACCACCGAAAAACAGCCTTTATGATAAGATTATGAGCGGACCCTACAAGAACGGCGATCCGGCGCATAATCATGCCTGCGACTTGTGCGGTATGATTTACCGATATCGGCCGAATATGCTCAAGCACAAGGCGCTTTGCGCGCGACAAGATCCGGAAAACAGAACGTTGTACAGATGCGTACATTGTTTCATGACGTTCATCGTGTTCAAGAAGTTCCACTATCACGTCACGGCCGAACACAAGAAGAAGGACTTTACTTGTTCCTTATGCTTTTCCCAATTTCGTTCGCCCAGTGACTTCCTGACCCATCATGAGACCCATCGCACGACAGTGCAAGATAATCGACAAATGCAGCATGATGATACCTCGCAGAATGTTCAAGCACCACTGAAGGAACGCAATGCATACGAAACAAATGCCAAGTCGAGAATCAGCTCGCGAATGTCAAATCAGAAGTACAGCTGCCCCCTTTGCACCCAAGAGTTCTCCACAAGAGCCGAGATGAATGAGCATCGGACTCTCCATCTTAAAGTGAAGATATACTCGTGTGCTATTTGTCGTAGTATGTTCAGCAGTGCCGGCGCCTTGGAGATTCATATGAAGGATCACGGAATCGAGGACCCGAATGAAAGAAACGCTAATATTTCCTGCGTGGAATACGGCAGCTTGGACGAAGACGTGAGGATCGAGAAAGATGTAATGAATGCTAGTTCTATCTCGGATCCTGGTACGCAAGTTCATGAGTGTGGCGAGTGCGGTAAGGTGCTATCAAGTTACGCTAATCTTCGGCGACATGCTAAGATCGCTCATCGGAATTGTAAGATGTACGATTGTGTCAAGTGCTCACGTATGTTCATGCGTAAAGATCTGTACGATCACCATATGCAGCTCAAGCACAACTTTACCAAGACAATGCTACAGTGTCCGCAATGCCCCAAGAGTTTCGTCTTCCAGTCAAACTTCACCTCTCACTTCCGTACTGCCCACGTTGAGAAATCGCAGAATGGTTATGCCTGCGACATCTGCGGCAAAGTCTTCGAAGAGGAAGCTTCTTTGAAAATACACAGAGGCTGGCACAATCGTGCAAACTCGCGTCTGAGTACTCGATTCATATTAGGCAATCGGAAGACGTCCAATAGCGCGCAGAAAGAATCGAGTAGTGTCGAGTCTGGTGAGAATTCAGAACGGCCGGCGAGAGCACGAAAGTCTTTCCCTAATCCTCCACCTCAATCGCCAGTGAAGACATCGGGAAATTTCCAGTGTCAAGTATGCAATGACAAATTTAATGATGTTATCGAGCTAAGAACCCATTTGTGGGACGTCCACTGCGCCCGTAACAAAGCAGAGAAAAGTTTCTCCAATGATGAGCTTCAATGCGAACTCTGCACAAACATATTCCCCGATCAGGAAACCCTGGCATCTCATATGCAATGGCACAAGGCCAATCCTATTCTTAGTAACATACAAAAGACGTTCACCTGCGAGATATGCGGCAAGTCTTACAGTTCGAAGAAGGTTCTATGGAAGCACAAGAGACTTCACAAGGCTACAGTTGTAGCCTCGATCAAGTTCCAGTCTTTAGCCAGAAAACCGATGGCCTCGCAATTCCTGTGCACCTTTTGCCGTAAGGTCTTCTCGAGCAGCCAGTCTCTACAACGGCACAAGCTTTCCTTTCACAGTGATTTACAGATACAGGCCCAACAACGCGCTCAGCAACAATTATACAACAGCAATCGAGCATCGTTCGAGGACGAGCCGAGACCAAAGCGCATGAAATTGGAGGTCGACAGTGACAATTCGCAGGCCAAGTTGTCGCCTTTCGCCATGGACTTCGCCGGTGAGAAGAAGAAACCGGTCATGTGCCACGTTTGCAAGAAAATGTTCCCCAATATGAGCGTGCTGTACATGCATAAGCAAGCGGTTCACAAGGCCcgtgtaaaaaaagtaaatgacGTGCCCGAATGCATTCCGATGTCGACTCAGGATGGCAAGTTTTCATGCAACATCTGCTTCAAGGAATTTCCCGGTTTGTCGAATCTGCGACAGCATTTCACGATCAAACACAAGAAAACATCCGAAGCCGCCGCTAGCATGCCGAGAAATGACAGAGTGGAGCAGCTCCCGTCACCCGAACGGCTAAAGGACTACGAGATGGCCTATAATAACGTGATGTACAGCTGCAAACTGTGCAAGCAGTGCCACGTCTTCAATAAAGAATCTATCACGAGCCATATCACCAACGTGCACAACGCAGTGTATCAGGCAGACAGTAAGACGTTCCATAGGGAGATCAATCTGAGCACTTACACAGTGAAGCACGCGATCGCAGCTACTTGTCCGGAATGTGACGTTAAATATCCTAATAATAGAGCTCTGAAAATACACTATATTAAGTTCCACGAGAATGCCGATTAA
Protein Sequence: MDEDVVEIRNAETVCRLCLSTDGPRSSVFAKQEDGEKEESSGVPLAAKIQACLSIQILTTDKLSTLICESCVKNVNQWHTYKESCLRTQEKLQEWLANQLQSNPKIITIKDEPMDVDYEDNVEIISEITNNVEKSQSPIQTVEDDNIRNKSNIEKAQDVTDNNDANDTNRETDSLTVEKETDKEENQTDQQDSVALCSVKSEPQDDGDIDTIEIESSNSSELLLNPMATSGTEDTVMEADSTQKSNATGLPSKKKLRRGPHTHFRGTRVFKKKCTHCQIFLHSKYSYMKHMKRFHSKENGIENLGQNDDDEEMIEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLAHIRQHMPDLRPYTCVACLTEFHDRSMYQLHCGASFECAMKIALVIPKHGSERYFTCNMCLRSMQGRKELLSHLSKHSDKQYEEMMSPMRAPPKLKPMAPLPPKNSLYDKIMSGPYKNGDPAHNHACDLCGMIYRYRPNMLKHKALCARQDPENRTLYRCVHCFMTFIVFKKFHYHVTAEHKKKDFTCSLCFSQFRSPSDFLTHHETHRTTVQDNRQMQHDDTSQNVQAPLKERNAYETNAKSRISSRMSNQKYSCPLCTQEFSTRAEMNEHRTLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGSLDEDVRIEKDVMNASSISDPGTQVHECGECGKVLSSYANLRRHAKIAHRNCKMYDCVKCSRMFMRKDLYDHHMQLKHNFTKTMLQCPQCPKSFVFQSNFTSHFRTAHVEKSQNGYACDICGKVFEEEASLKIHRGWHNRANSRLSTRFILGNRKTSNSAQKESSSVESGENSERPARARKSFPNPPPQSPVKTSGNFQCQVCNDKFNDVIELRTHLWDVHCARNKAEKSFSNDELQCELCTNIFPDQETLASHMQWHKANPILSNIQKTFTCEICGKSYSSKKVLWKHKRLHKATVVASIKFQSLARKPMASQFLCTFCRKVFSSSQSLQRHKLSFHSDLQIQAQQRAQQQLYNSNRASFEDEPRPKRMKLEVDSDNSQAKLSPFAMDFAGEKKKPVMCHVCKKMFPNMSVLYMHKQAVHKARVKKVNDVPECIPMSTQDGKFSCNICFKEFPGLSNLRQHFTIKHKKTSEAAASMPRNDRVEQLPSPERLKDYEMAYNNVMYSCKLCKQCHVFNKESITSHITNVHNAVYQADSKTFHREINLSTYTVKHAIAATCPECDVKYPNNRALKIHYIKFHENAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765843;
90% Identity: iTF_01422403;
80% Identity: -