Tbic016925.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- -
- Assembly
- GCA_011636605.1
- Location
- VBVP01004808.1:405-5827[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.018 2.4 9.3 3.1 1 23 510 532 510 532 0.97 2 18 0.015 2 9.6 0.5 2 23 569 590 568 590 0.96 3 18 0.00033 0.044 14.8 0.7 1 23 657 679 657 679 0.95 4 18 0.00033 0.044 14.8 1.2 1 23 682 704 682 704 0.98 5 18 6.5e-05 0.0088 17.0 1.0 2 23 752 774 751 774 0.95 6 18 0.0038 0.52 11.4 1.0 1 23 780 802 780 802 0.96 7 18 0.0002 0.027 15.4 1.1 1 20 808 827 808 832 0.94 8 18 3.8e-05 0.0052 17.7 1.3 1 23 906 928 906 928 0.97 9 18 0.00018 0.025 15.6 5.0 1 23 982 1004 982 1004 0.97 10 18 0.00026 0.036 15.1 0.7 1 20 1009 1028 1009 1030 0.94 11 18 0.044 6 8.1 0.3 2 23 1041 1062 1041 1062 0.97 12 18 2.7e-05 0.0036 18.2 0.6 2 23 1101 1122 1100 1122 0.97 13 18 2.4e-05 0.0033 18.3 1.6 1 23 1127 1149 1127 1149 0.95 14 18 0.001 0.14 13.2 1.7 1 20 1155 1174 1155 1177 0.93 15 18 4.3e-06 0.00058 20.7 0.4 1 23 1193 1215 1193 1215 0.95 16 18 4.8e-07 6.5e-05 23.7 0.6 1 23 1221 1243 1221 1243 0.98 17 18 3.8e-05 0.0052 17.7 0.2 1 23 1249 1271 1249 1271 0.97 18 18 0.022 3 9.0 6.9 1 23 1277 1299 1277 1299 0.96
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAGATAAATACGTCGGGTCCGCCACAGGGCGAGGACGCGATCGGCTCCGCCGTGAAGATATGCCGCGTCTGCCTGCTCGGCGACCTCGTGATGCGCGACCTCTTCGCGGAGAGCGAGGTCGCGTCCCTGTCGGCGAAGGCGATGAGCTTCGCCAGCGTTAAGATGTTACCAGGTGATGGTCTACCAGCACAGGTGTGCTACATGTGCGCTGACAAGTTGGAGTCGGCATACGAGTTTAAGTTACAAGTGGAGCAAGCCGACAATGTTCTTCGAGAAAAGCTTGTCGGCAGAATAATAAAGGAGGAGCTGTTTCTTAATGAAGTCGAAATACACTTGGATGCTGAGAGGAATGACGGTATTGATGAGATGAATGTTAGTGCTGATTATGAATCTGGTACCACAGCAGTGCTACCAGTGGAGTCGGCGGCTGACaagaattttctgaaaaatcagTTAATGATTTTGGAAGCTGAAAAATTGGCAGAGACCGAGGAAATACAAGATCCGGAACAAGATAACTCGCAAGAAATCACGCAAGAGAGCATTGTGGAAGAATTTCAGCAAGAATTAGCCGGTGCGGACGATAATGATATGTCAGATGATATTGATGAATCTAGAGACGAAGAACTTTCcaacgaaaatattattcgaaattgCACAGATGCAATTCCAACAGAGGAACATGATTACATTATGCAGCAACAATGTATATTGCCTGCTGAACAACTTTCCTTACAAGAAGAAATGCAGGAGGAAATGCGGGAAGAAATGCAGGAAACTGTACCAAAACTTGAACACGACACTAAGATGGAGTGCCAAGAGATACTATCTGAACAAACCCAAGAAGTTCAAGCTGAACAATGTCAAGAAATTCAAGCGGAGCAAATTCACGAAACTCAAGCTGAGCAAGAGATTCAAGCTGAACTAAATCAAGAGATTCAGAATGAACTAAATCAAGAGATTCAGAATGAACTAAATCAAGAGATTGAAGATAAACTAAATCAAGAAATTCAGgctaaattaaatcgagaaattcaggctaaattaaatcgagaaattcaggctaaattaaatcgagagattcaggataaattaaatcaagagaTTCAGGCTGAACTAAATCAAGAGATTCAGCCTGAACTGAATCAAGAGATTCAGGCTGAACTGAATCAAGAGATTCAAGCTGAACTAAATCAAGAGTTTCAGGCTGAACTAAATCAAGAGATTGAAGCTAAACTAAATCAAGAGATTCAGACTGAACTAAATCAAGAAGCTCAAGCTGAGCAAAATCAAAACGACGAGGAGGTATTATTCAAGGAGGAAGCACCCAAAATTGATACTAATGACCCAATAGTGGAACAAGAATCATCTCAGAATGAAACTAGAAGAAGTAAACGTAGATTGGCTCGTCGGACATTCGCCGAACGGGATTCCGACGAAGagaattatttcgaaaatctgAATCTCAGTTCTCGATTAAGAAAGGCGCAGGCGGATAAGGCGGAGAAGATCTTTTTTATGTGCTATTTGTGTGATAAGCAGTTCCTTTCGAAGAGCGTGCTGAAAGAACATATGCATTCCCATGAGGAAGTAAGGAAAACGCTATCTTTGAAGAAAACTCCGGAGAAACCGCAAAAGATGCAGAGTAGCGTCTCCGTGGCGAAGACGCCGCCATCCGGAAAGAAAGCCAATAAGTGCCCTTATTGTGGTAAAGAATATCTGTACATAATCTCATTTACTAAACACATTAAGCAACACGAGCGAGATCGGGAGGAAGCGAAGGAGGATCCGATGCCGCTCGAGATTTCGTTCCACGAGGATGAGCACAGTCTGGATTTCGAGAACGGTAACAGATCGGACAGCGAGAGCAAGAAGCGAAAGAGAACAAGTACGGCCGACGACGCCGCGAGCGACAGCGATCAGGATAAGAGAAGAAAGCGTAATCACATTGAGGAGTTTGCGTGTGACAAATGTCCAGAGAAATTCGACACGAAGCGAGGTCTGCAAAAGCATTCGGTCACGCATGGTAGCTTCAAGTGCAGCGTGTGCAACGAGGAGTACGACACTCTGGAACAATTGAGAAATCACCGAACGAAGCACGTGGTTGAGGGCGTGCTCTCGGAGCAAGATTTGGAAGAAGATATGAAGATAACGGCCAAGATAGAGAACAGTGAGTACAATAAGAACGTCGAGAATACGGAGAACAACGGCGAATCCGCCGAAACCACGAAGGAGCCGCTGAAATGCCCGACGTGTTCCATGACGTTCTCGCGCATGAAATCGCTGTCCAGACACATGGACATAACGCACTCCGGCGTCCGCCCTTACGAATGCAAGATATGCCGTCAGCAATTCCTGCGGAAGGATCTGCTGCGCAGACATGCCGAGCAGCACGCGCGAGTGAAGGTCTATAAATGTACCCAGTGTAATAAGACCTTCGGCAACGAGTTCACGCTGAGAAATCACCTGGTCGCCACGAATCACAAGACATTCATACAGGGGCAGGAATACGATCCGAACAAGCGTATAAAGCGCTCGGCGGCGAAAGCGGCGCAGAAGATCATTGACAAGATCAAGACGGAGGACGGCCTCGAGGATTACGAGGACGATAACGAGGACAATATCGATTACGACGTCAAGTTGGACGGGCATTATCGCCGTAAGCGCGACGCTACACCAAAGAAGTACAGTTATAAGAAGGAGTTTGAGTGCGCGTCTTGTAACAAGAGATACAGCACGAAGCAAGCGTTGACGAAGCATATGGAGCAGCATGTGAAGGAGGAGAAGGCGGAGAAGGTGGCGGAGAAGCTGAAGAAGGCCGCTCTGGAGAAGAAAGAGGCACAGAAGACGACGAGCAACGTGGGCGataacgatgacgacgatAACTTTGACTCCGACTTTGAGAGCGGCCTCGACTGGCCGATGGACAGCCACGAGTGCACCACGTGCAAGAAGCGATATAGCACGAAGAAGTCGTTGCTGCGCCACCAGCTGTTGCACGAGGAGCCGAATTTCGAGTGTGATATCTGCAACGTCAAGTTTTACCGCAAAGACAAGTTGAAGGCGCACTACGACAAGTGCTCGGAAAAGAATCCCGATCAGGTGAGGAAGTGCAATATCTGCGGCGACAGTTTCGAGAACAATGAGATCCTGCGTGAGCACAGGGCCAAGCACGTCACCGAGGGTATCTTAACGGAGGAGGATCTGAGGGACATCGAGCCCAAGTCCGAAGAGAGAAAACCGGGCGAGAAGATCGGTCGGAAGAGGAGAACCGACATCGTGGGGCTCGAGTGTACCGAATGCAACAAACAGTATACTTCCAGGAAGGGTCTGCTGCGGCACATTCAGGTGCACGAGGGCAAGAAGTACCTGTGCGACATATGCCCGAAGAAGTTCTACCGGCGAGAGCACTTGAAGATACACGTAGCCAAGCACAACATGATCAAGCCGTACAAGTGCACTCGCTGCAGCAAGCGCTTCATCAAGGAGGAACAGCTCAATAACCACCTGCCTAAGCACGATCGCACATTCAAGAAAAACAAGGAAACCGACAGCTCGAAGAGATTCCTCTGTGAGATCTGCAGCAAGAGCTTCACGCAGTCGACGACGCTGATAGCGCATCTGCGCGCCCATAACGGTATCAAACCGTTCGTGTGCGAGGTATGCTCCAGGCCGTTCACCACCAACGCCTACCTGAAGATGCACatgcgcacgcacacgcaggAGCGTCCGTACATCTGCCAGTACTGTTCACGAGCGTTCGCACGCGCCGACACCTTGGCGAATCATCTGACGTCGCACACCGGCGAGGCCAAGTATCACTGCAAGTGCTGTCCGAAGAATTTCCGGCGGTTGAAGTCGCTGAAGGAGCACATGTTTATTCATACGGGTCAGCGACCTTATGAGTTACATCAAACCGCGATCGGCCAGGCGCAAGTAGTCAAAGCGCAGAACATCAAAACGATCGCTATAACGAGACCGGCTGATCCTACCACGATAACCACGACACAACAAGTTATGCAGCATCAGGAAATATTAATGCCTCTAATCCTACCGCTTACCGTCACTCTTACCGACGTAGGTGAGGAGGTGATCCTACCTGAGGGTACAAAGATATTCACCACCTCTTAA
- Protein Sequence
- MDAVEINTSGPPQGEDAIGSAVKICRVCLLGDLVMRDLFAESEVASLSAKAMSFASVKMLPGDGLPAQVCYMCADKLESAYEFKLQVEQADNVLREKLVGRIIKEELFLNEVEIHLDAERNDGIDEMNVSADYESGTTAVLPVESAADKNFLKNQLMILEAEKLAETEEIQDPEQDNSQEITQESIVEEFQQELAGADDNDMSDDIDESRDEELSNENIIRNCTDAIPTEEHDYIMQQQCILPAEQLSLQEEMQEEMREEMQETVPKLEHDTKMECQEILSEQTQEVQAEQCQEIQAEQIHETQAEQEIQAELNQEIQNELNQEIQNELNQEIEDKLNQEIQAKLNREIQAKLNREIQAKLNREIQDKLNQEIQAELNQEIQPELNQEIQAELNQEIQAELNQEFQAELNQEIEAKLNQEIQTELNQEAQAEQNQNDEEVLFKEEAPKIDTNDPIVEQESSQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLRKAQADKAEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKTLSLKKTPEKPQKMQSSVSVAKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHERDREEAKEDPMPLEISFHEDEHSLDFENGNRSDSESKKRKRTSTADDAASDSDQDKRRKRNHIEEFACDKCPEKFDTKRGLQKHSVTHGSFKCSVCNEEYDTLEQLRNHRTKHVVEGVLSEQDLEEDMKITAKIENSEYNKNVENTENNGESAETTKEPLKCPTCSMTFSRMKSLSRHMDITHSGVRPYECKICRQQFLRKDLLRRHAEQHARVKVYKCTQCNKTFGNEFTLRNHLVATNHKTFIQGQEYDPNKRIKRSAAKAAQKIIDKIKTEDGLEDYEDDNEDNIDYDVKLDGHYRRKRDATPKKYSYKKEFECASCNKRYSTKQALTKHMEQHVKEEKAEKVAEKLKKAALEKKEAQKTTSNVGDNDDDDNFDSDFESGLDWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKSEERKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLNNHLPKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPFVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYELHQTAIGQAQVVKAQNIKTIAITRPADPTTITTTQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422382; iTF_01423825; iTF_01423081;
- 90% Identity
- iTF_01423825;
- 80% Identity
- -