Thoc004338.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetragonula hockingsi
Gene Symbol
-
Assembly
GCA_010645185.1
Location
WIUV01001826.1:19436-22493[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.4 1.2e+03 1.3 0.2 2 20 327 345 326 347 0.84
2 16 0.0085 1.6 10.4 2.4 2 20 379 397 378 399 0.94
3 16 0.0061 1.1 10.8 3.7 2 23 440 462 439 462 0.95
4 16 0.013 2.5 9.8 0.1 1 23 468 490 468 490 0.96
5 16 3e-06 0.00057 21.2 3.4 1 23 496 518 496 518 0.96
6 16 0.00025 0.046 15.2 2.0 1 23 527 549 527 549 0.96
7 16 2e-05 0.0037 18.7 1.8 1 23 555 577 555 577 0.98
8 16 2.9e-06 0.00054 21.3 0.6 1 23 582 604 582 604 0.97
9 16 0.0098 1.8 10.2 7.1 1 23 611 633 611 633 0.98
10 16 0.0052 0.97 11.1 1.3 2 23 652 673 651 673 0.95
11 16 0.00061 0.11 14.0 0.3 3 23 682 703 680 703 0.96
12 16 0.00032 0.06 14.9 0.9 1 23 709 731 709 731 0.98
13 16 0.00027 0.05 15.1 3.0 1 23 737 759 737 759 0.98
14 16 5.8e-08 1.1e-05 26.6 1.3 1 23 765 787 765 787 0.99
15 16 2.4e-06 0.00046 21.5 1.5 1 23 793 815 793 815 0.97
16 16 0.22 42 5.9 0.1 2 15 821 834 820 837 0.88

Sequence Information

Coding Sequence
ATGAAGATAGTTTGTGCTGCAAAAACATGTAAATACTCTTTAGAGAATGAAGACTCGACCAGTgtcaaatttattcatttcccAAACAATGATACATCAAAAATATGGGCACATCAGTGTGATAGAACGGATCTTTTAATGAAGTCTAATGAAGAATTGCATTTGAACTATTACGTATGTTCTCATCATATAGAGGATcgttatttcataaataaaacaaatccTGTGATAATAGACCAACACGCTATTCCAACTTTATTTGAATCTCGTACTAGTATTGAAAAAGATTCAAGAAATGTTTTTGATAGAAATGAACAAACACAAATAGCTGATAATGTGTTATCATATTATGATATGgatgttgaaataaatcagTATCATGatgtgaatattaaattttcaaatttatgtaGAATATGCCAGGAATCATGTTTGAATggtatagaaatattttcattgaaaggAATGGATTTAAGactaagagaaaaaataaatttacatctaCCAATTACAGTTGATAAGGAAGATATAATGCCACAAAAATTGTGTATGAACTGTTATAACAGATTAGAAATTGCACATTCGTTAGCTGTAACATCATTAAAAACAGACATgaggttaaaaaaatttttgaacattaaTGTAAAACTAAATTATGATCATAGATATAGTGCAATAGTAAAGAAGTGTTCCGTAGAAATAGCTGAAGAAATGTATATGAATGAAACAACTGAAATTACATCTGTAGAGTTATCttctaacaaaattaatgaaatttctatgaatcACGAAGTCActgagaaatttaataacttacAAAATACTAACATGCAAAAAGatagttttaaaaatagtataaCAAAAGAAGTGCAGtctgatttaaattttgaatcacacaataaagaaattaaagaaagtaAATGTACCACTAGTATGACAAAagattatttagaaaataaaacattaaataatacaattcaaTGCATTTATTGTAAGAATGTGTTTAAAAcacaagaaatatttgaaaatcacaAAATGTTGTGCGTTGaaggaaaaatacaaaaggaaaaaaaacccactaataataaagaatctgataatataaaaataatgaacttCCAATTTGTAACGAAAACTTGCAATATTTGTCATGAACattttgaaactgaaaaacACTTTATTGAACATATCTCATACTGCAAATTTCTTCAAGAAGATTATCGAATTACTGAGCATAAAGCAATCGCAAAGACGGAACAGTACAATAACTACAGAGATTcctacaatattaataatctattGATAGAAGCTAATAAAAAATGTGGCCACtgtaatttgatttataacactaaaaaggaattattaaatcatattATGGAATGTCATGAGGGccaacttttatttaaatgtatcatGTGTGACAAAAGCTATGACAAATGGGTTAGTTTAGACATACATGAAGCCACTCACAGAAGAGATAAACCTTATCTATGCGATTTATGTGGAAAAAGCTTTAAACATTCCAATAATTTAAGAGGTCACAAAAGAACACATTTAGATGattcaaaaaagaaacgacacaTTTGTGATATTTGTGGAAATGCATTTAGATCTAGATTTCATTTGGGAGAACATATGAACCAGCATAATGGAAATAAACCTTACTCTTGTGAAAAATGCGGCAAAGctttttacaaaagaataCAATTAAGACAGCATAAACTTTCTCATGgtttaaataaacatatttgtCCAATTTGTGGGGCAGCTTTCAATCGTAAGGGAAATATGAATACACATCTTAAACGTCATAATAACAGAAACGATACGTATACATGTAGTATATGTACACATAGATGTAAATCAATGAGTGAACTGAAATCACATAGAAAAAATCATACAGAACAAGACATAGAAAATATAAGTAAACGGCGTATCGATAAAACTATATGGAAATGTAAGACTTGTAGTCGGATATTTTCAACTCGAGCGGTATTATTGAATCATGaacatatacataaaaagGACAGAATATGTATCGACTGCAATATTTGTGGGAAGAAATTAGCaagtaaaaattctttaatatatcataaaaagtCTATTCATTCTTCGGAGAGACCGTACACGTGTCAATACTGCAAAGAATCGTTTGTTTCCAAAGAATCGCGTCTTATACACGAAAGAATCCATACCGGAGAACGTCCTTACGTCTGCAAGATATGTAAAATGGAATACAGATGTTCAAGCAATCTTAATCAAcacatgaaaattcattctgaTATTAAGCCTTATAAATGTACATACtgtaataaaagtttcacgcGAAAAGGAGCATTAAATGTACATGAGAGAATTCATACTGGAGTGAAACCATTTGCCTGCCAAATATGCGATAGaacattttctcaaaaaaacgACATGATCAAGCACACTAAAACGCACGATGCCAAATCGTTGTCTTGTGAGCAATGCGATGAAGTGTtcgtaaagaagaaaaatatcctgAAACTTATTGATTTACATGAAGAAAATCCAATAATTCAGGAACATATAGAGGTACAACAAGAAATAGAAtcttataatgtaaatataacatGCTCTGAATTTGAGTAA
Protein Sequence
MKIVCAAKTCKYSLENEDSTSVKFIHFPNNDTSKIWAHQCDRTDLLMKSNEELHLNYYVCSHHIEDRYFINKTNPVIIDQHAIPTLFESRTSIEKDSRNVFDRNEQTQIADNVLSYYDMDVEINQYHDVNIKFSNLCRICQESCLNGIEIFSLKGMDLRLREKINLHLPITVDKEDIMPQKLCMNCYNRLEIAHSLAVTSLKTDMRLKKFLNINVKLNYDHRYSAIVKKCSVEIAEEMYMNETTEITSVELSSNKINEISMNHEVTEKFNNLQNTNMQKDSFKNSITKEVQSDLNFESHNKEIKESKCTTSMTKDYLENKTLNNTIQCIYCKNVFKTQEIFENHKMLCVEGKIQKEKKPTNNKESDNIKIMNFQFVTKTCNICHEHFETEKHFIEHISYCKFLQEDYRITEHKAIAKTEQYNNYRDSYNINNLLIEANKKCGHCNLIYNTKKELLNHIMECHEGQLLFKCIMCDKSYDKWVSLDIHEATHRRDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHICDICGNAFRSRFHLGEHMNQHNGNKPYSCEKCGKAFYKRIQLRQHKLSHGLNKHICPICGAAFNRKGNMNTHLKRHNNRNDTYTCSICTHRCKSMSELKSHRKNHTEQDIENISKRRIDKTIWKCKTCSRIFSTRAVLLNHEHIHKKDRICIDCNICGKKLASKNSLIYHKKSIHSSERPYTCQYCKESFVSKESRLIHERIHTGERPYVCKICKMEYRCSSNLNQHMKIHSDIKPYKCTYCNKSFTRKGALNVHERIHTGVKPFACQICDRTFSQKNDMIKHTKTHDAKSLSCEQCDEVFVKKKNILKLIDLHEENPIIQEHIEVQQEIESYNVNITCSEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00734082;
90% Identity
iTF_01419133;
80% Identity
-