Tcly024156.1
Basic Information
- Insect
- Tetragonula clypearis
- Gene Symbol
- -
- Assembly
- GCA_010645135.1
- Location
- WIUT01000202.1:44986-47874[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.019 3 9.2 2.4 2 20 329 347 328 349 0.93 2 15 0.0055 0.88 10.9 3.7 2 23 390 412 389 412 0.95 3 15 0.012 1.9 9.9 0.1 1 23 418 440 418 440 0.96 4 15 2.7e-06 0.00044 21.3 3.4 1 23 446 468 446 468 0.96 5 15 0.00022 0.036 15.3 2.0 1 23 477 499 477 499 0.96 6 15 1.8e-05 0.0029 18.8 1.8 1 23 505 527 505 527 0.98 7 15 2.6e-06 0.00042 21.4 0.6 1 23 532 554 532 554 0.97 8 15 0.0019 0.3 12.4 5.8 1 23 561 583 561 583 0.98 9 15 0.0047 0.75 11.2 1.3 2 23 602 623 601 623 0.95 10 15 0.00055 0.088 14.1 0.3 3 23 632 653 630 653 0.96 11 15 0.00029 0.046 15.0 0.9 1 23 659 681 659 681 0.98 12 15 0.00024 0.039 15.2 3.0 1 23 687 709 687 709 0.98 13 15 5.2e-08 8.4e-06 26.7 1.3 1 23 715 737 715 737 0.99 14 15 2.2e-06 0.00035 21.6 1.5 1 23 743 765 743 765 0.97 15 15 0.2 32 6.0 0.1 2 15 771 784 770 787 0.88
Sequence Information
- Coding Sequence
- ATGAAGATAGTTTGCGCTGCAAAACCATGTAAATACTCTTTAGAGAATGAAGACTCGACCAATgtcaaatttattcatttcccAAACAATGATACATCAAAAATATGGGCACATCAGTGTGATAGAACGGATCTTTTAATGAAGTCTAACGAAGAATTGCATTTAAACTATTACATATGTTCTCATCATATAGAGGATcgttatttcataaataaaacaaatccTGTGATAATAGATCAACATGCTATTCCAACTTTATTTGAATCTCATACTAGTATTGAAAAAGATTCAAGAAATGTTTTTGATAGAAATGAACAAACACAAACAGCTGATAATGTGTTGTCATATTATGATATggatgttaaaataaatcagtaTCATGatgtgaatattaaattttcaaatttatgtaGAATATGCCAGGAATCATGTTTGAATggtatagaaatattttcattgaaaggGATGGATTTAAGactaagagaaaaaataaatttacatctaCCAATTACAGTTGATAAGGAAGATATAATGCCACAAAAATTGTGTATGAACTGTTATAACAGATTAGAAATTGCACATTCGTTAGCTGTAACATCATTAAAAACAGACATgaggttaaaaaaatttttgaacattaaTGTAAAACTAAATTATGATCATAGATATAGTGCAATAGTAAAGAAGTGTTCCGTAGAAATAGCTGAAGAAATGTATATGAATGAAACAACTGAAATTACATCTGTAGAGTTATCttctaacaaaattaatgaaatttctatgaatCACGAAGTCACTGAGAAGTTTAATAACTTACAAAATACTAACATgcaaaaagataattttaaaaatagcaTAACAAAAGAAGTGCAGtctgatttaaattttgaatcacacaatacaaaaatacaaaaggaaaaaaaacccactaataataaagaatctgataatataaaaataatgaacttCCAATTTGTAACGAAAACTTGTAATATTTGTCATGAAcattttgaaactgaaaaacaCTTTATTGAACATGTCTCATACTGCAAATTTCTTCAAGAAGATTATCGAATTACTGAGCATAAAGCAATCGCAAAGACAGAACAGTACAATAACTACAGAGATTcctacaatattaataatctatTGATAGAAGCTAATAAAAAATGTGGCCACtgtaatttgatttataacactaaaaaggaattattaaatcatattaTGGAATGTCATGAGGGccaacttttatttaaatgtatcaTGTGTGACAAAAGCTATGACAAATGGGTTAGTTTAGACATACATGAAGCCACTCACAGAAGAGATAAACCTTATCTATGCGATTTATGTGGAAAAAGTTTTAAACATTCCAATAATTTAAGAGGTCACAAAAGAACACATTTAGATGattcaaaaaagaaacgacacaTTTGTGATATTTGTGGAAATGCATTTAGATCTAGATTTCATTTGGGAGAACATATGAACCAGCATAATGGAAATAAACCTTACTCTTGTGAAAAATGCGGCAAAGCTTTTTACAAAAGAATACAATTAAGACAGCATAAACTTTCTCATGgtttaaataaacatatttgtCCAATTTGTGGGGCAGCTTTCAATCGTAAGGGAAATATGAATACACATCTTAAACGTCATAATAACAGAAAcgatatgtatacatgtagTATATGCCCACATAGATGTAAATCAATGAGTGAACTGAAATCACATAGAAAAAATCATACAGAACAAGACATAGAAAATATAAGTAAACGGCGTATCGATAAAACTATATGGAAATGTAAGACTTGtagtcgaatattttcaactcGAGCGGTATTATTGAATCATGAACATATACATAAAAAGGACAGAATATGTATCGACTGCAATATTTGTGGGAAGAAATTAGCaagtaaaaattctttaatatatcataaaaagtCTATTCATTCTTCGGAGAGACCGTACACATGTCAATACTGCAAAGAATCGTTTGTTTCCAAAGAATCGCGTCTTATACACGAAAGAATCCATACCGGAGAACGTCCTTACGTCtgcaaaatatgtaaaatggaATACAGATGTTCAAGCAATCTTAATCAACacatgaaaattcattctgaTATTAAGCCTTATAAATGTACATACtgtaataaaagtttcacACGAAAAGGAGCATTAAATGTACATGAGAGAATTCACACTGGAGAGAAACCATTTGCCTGCCAAATATGCGATAGaacattttctcaaaaaaacgACATGATCAAGCACACTAAAACGCACGATGCCAAATCGTTGTCTTGTGAGCAATGCGATGAAGTGTtcgtaaagaagaaaaatatcctgAAACTTATTGATTTACATGAAGAAAATCCAATAATTCAAGAACATATAGAGGTACAACAAGAAATAGAAtcttataatgtaaatatagcATGCTCTGAATTTGAGTAA
- Protein Sequence
- MKIVCAAKPCKYSLENEDSTNVKFIHFPNNDTSKIWAHQCDRTDLLMKSNEELHLNYYICSHHIEDRYFINKTNPVIIDQHAIPTLFESHTSIEKDSRNVFDRNEQTQTADNVLSYYDMDVKINQYHDVNIKFSNLCRICQESCLNGIEIFSLKGMDLRLREKINLHLPITVDKEDIMPQKLCMNCYNRLEIAHSLAVTSLKTDMRLKKFLNINVKLNYDHRYSAIVKKCSVEIAEEMYMNETTEITSVELSSNKINEISMNHEVTEKFNNLQNTNMQKDNFKNSITKEVQSDLNFESHNTKIQKEKKPTNNKESDNIKIMNFQFVTKTCNICHEHFETEKHFIEHVSYCKFLQEDYRITEHKAIAKTEQYNNYRDSYNINNLLIEANKKCGHCNLIYNTKKELLNHIMECHEGQLLFKCIMCDKSYDKWVSLDIHEATHRRDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHICDICGNAFRSRFHLGEHMNQHNGNKPYSCEKCGKAFYKRIQLRQHKLSHGLNKHICPICGAAFNRKGNMNTHLKRHNNRNDMYTCSICPHRCKSMSELKSHRKNHTEQDIENISKRRIDKTIWKCKTCSRIFSTRAVLLNHEHIHKKDRICIDCNICGKKLASKNSLIYHKKSIHSSERPYTCQYCKESFVSKESRLIHERIHTGERPYVCKICKMEYRCSSNLNQHMKIHSDIKPYKCTYCNKSFTRKGALNVHERIHTGEKPFACQICDRTFSQKNDMIKHTKTHDAKSLSCEQCDEVFVKKKNILKLIDLHEENPIIQEHIEVQQEIESYNVNIACSEFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734082;
- 90% Identity
- iTF_01419778; iTF_01421064; iTF_01418490; iTF_01420412;
- 80% Identity
- -