Basic Information

Insect: Tetragonula clypearis
Gene Symbol: Rreb1
Assembly: GCA_010645135.1
Location: WIUT01010856.1:1-7594[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.059 9.5 7.7 0.2 1 23 32 54 32 54 0.95

2 16 2.3e-06 0.00037 21.6 3.5 1 23 68 90 68 90 0.98

3 16 2.3e-06 0.00037 21.6 1.1 1 23 96 119 96 119 0.98

4 16 0.082 13 7.2 0.2 2 23 232 255 231 255 0.93

5 16 0.17 27 6.3 2.9 2 23 261 283 261 283 0.94

6 16 1.5 2.4e+02 3.3 0.6 1 19 339 357 339 359 0.89

7 16 0.16 26 6.3 0.1 1 23 471 493 471 493 0.96

8 16 2.3e-05 0.0037 18.4 0.3 1 23 502 524 502 524 0.98

9 16 0.001 0.16 13.3 2.8 1 23 530 553 530 553 0.97

10 16 0.00053 0.085 14.1 2.8 1 23 933 956 933 956 0.96

11 16 0.0004 0.063 14.5 0.1 3 23 1226 1246 1224 1246 0.97

12 16 0.2 32 6.0 6.9 1 23 1252 1275 1252 1275 0.97

13 16 0.0033 0.53 11.6 2.2 1 23 1313 1337 1313 1337 0.97

14 16 2.4 3.9e+02 2.6 5.3 1 23 1420 1443 1420 1443 0.95

15 16 0.009 1.4 10.3 0.4 2 23 1494 1515 1493 1515 0.94

16 16 1.1 1.7e+02 3.7 8.2 1 23 1521 1543 1521 1543 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.059	9.5	7.7	0.2	1	23	32	54	32	54	0.95
2	16	2.3e-06	0.00037	21.6	3.5	1	23	68	90	68	90	0.98
3	16	2.3e-06	0.00037	21.6	1.1	1	23	96	119	96	119	0.98
4	16	0.082	13	7.2	0.2	2	23	232	255	231	255	0.93
5	16	0.17	27	6.3	2.9	2	23	261	283	261	283	0.94
6	16	1.5	2.4e+02	3.3	0.6	1	19	339	357	339	359	0.89
7	16	0.16	26	6.3	0.1	1	23	471	493	471	493	0.96
8	16	2.3e-05	0.0037	18.4	0.3	1	23	502	524	502	524	0.98
9	16	0.001	0.16	13.3	2.8	1	23	530	553	530	553	0.97
10	16	0.00053	0.085	14.1	2.8	1	23	933	956	933	956	0.96
11	16	0.0004	0.063	14.5	0.1	3	23	1226	1246	1224	1246	0.97
12	16	0.2	32	6.0	6.9	1	23	1252	1275	1252	1275	0.97
13	16	0.0033	0.53	11.6	2.2	1	23	1313	1337	1313	1337	0.97
14	16	2.4	3.9e+02	2.6	5.3	1	23	1420	1443	1420	1443	0.95
15	16	0.009	1.4	10.3	0.4	2	23	1494	1515	1493	1515	0.94
16	16	1.1	1.7e+02	3.7	8.2	1	23	1521	1543	1521	1543	0.98

Sequence Information

Coding Sequence: ACTGTCAAAAGTGGCGCCGAGCAAAGATCTGAGAGCGAAGCACAAGCCGATGCTGCGTCGTCTCCATCCAGTGTCGAATTGCCAGAAAGCGCGCACTCGTGCCCGGCCTGTTCGGCCGTGTTGCCCACCTCCGGGGACTTGACGAACCACATACACGGCCACAACTCGTCGCGCAGCACCGACTGCAGCGGCGAGGACGAGTACTGCTGCAACATGTGCAACAGGGTGTTCAGCTCTTCCAGTTCCCTCAACAGGCACTTGTCGATGCACACAGGTGCCCGGCCGTACAAGTGCAAGTACTGTGAAATGGCGTTCACCACGAACGGGAACATGAACAGGCACCTGAAATCGGCTCATAGGGGCGCGTCGCCTCACAGCTGCACAGATTCCGAGGCTAGTACCAGCGGCAGTAACAGCAGCGACTCGGAGAAATCGAAGAGGCGACATCTCGAGGAGTACAACAACAACGAAATCACGAAAAGGAACTCGCCGGACTACGTCGAGGGGCGGCAAGTGATGGCGGTTGACGACgatgaggaggaggaggaggaggaggagccCCCCTTGTCTTTACCCGCGAAGCGAAAGTGCACGTACTCGAGCGACAACGAGACGCAGAAGAGGCACAAGATCCTTCTGAACAGCTCGAGGACTGAAATGAAGCCGAGACCGGACGACAGTCAGAACATCTGCACTTGTCCGGTGTGCGGCAGACAGGACTTTGGCAGTAGCGCCCTGCTGGAAGCGCACTTGGAACGAAATCACCCGGAGTTCCCCGCGAAATGCGACAGTTGCAACCTGTCGTTCAAAAACCACCGGGTGTTGAATCTACATCGGTTCATGATACACTTCGCGGAACACCCGGTGGGCAATACGACGAGGAACCTGCGAAACTCCGTGGTCGGTTTCAATGATTTGACGTTCGTCGACTTCTCGTCGGGCAAGTTCCCAGCGATAGCAAGAGCCGTCTGCGAGCAGTCGCTTCACCGGCCGGCCTCCGGCGAAGTTGCTAAGTTCCAATGCTCCAAGTGTCTGCGAGCGTTCCCTTGCAGATCGGCGTTGGACGCCCACGAGACCGACTGCGGCACGACAAACTCGCGGAGCAGAACGAACGACGGCCAGTCGAGGAGGGACGACTTCTTCGCCGGTCTGGACCTGCAGAACAAGGCCGCTCTTACGGAGgcgaaagaagggaaagatCTAGCCGACATACAGAGCATCATATCCGTCACTTCCGGCCCGATATTACAGAATTTCCCACGATCGGACGCGAGCACGCCGGAGAACGTCAAGTTCAATCCGGGCGCGAGTTCTTCTGGCTCGTCCGGCACGTACTCCTCGGAGTACCACGAGGAAGAGGCGCAGGATGCGTTCGCCGCGGAGTTCAGAAGGATGAAATTGAAGGGGGAGTTCCCTTGCAGGCTCTGTTCAGCGATATTCCCGAACCTGAGGGCTTTGAAGGGCCACAACAGAGCGCACATGGGCGTGGGGCCAGGTATGCCTTACCCGTGCAACATGTGCCCGTACACCAGCACCGACAAGGCAACGCTGGTGAGGCACCTGAGGTCGCACAACGGCGACAGACCGTACGAATGCTCGCTTTGCAACTACGCGTTCACGACCAAGGCGAATTGCGAACGCCACGTGCGCAACCGCCACGGGAAATTGACCCGCGAGGATATCAAGAGCGTGCTCATATACCACCCGAACGAGGACTCGACGAACGAGAACGTGGGACGAACCTCGCCGAGGGTCGTGAAGGACGAAGTGAGGAAAAGCTTGGttttctcgaacgaacgaagcgaGCTTCATCACCAGGCGCAGGTGCACTATCCTCCACCAGTCAGGGGTGAGATCAGGATAATAGAGGAAGCGAAACTGCACAACGCTACGATCGGGGCACACCATGGTGCGACAAACCACTGCGACAAGAGCGAGGCATTCTCGAGGCTCGGCCCGCCCGTGGCCGAGATGATCCATCGCGGCGACGATGGAAAGCCCGGCCATGACGCCAAGTCGGACTACTCGACGAAGCTAGACGACGACCTAGAGTCGAGATCGTCCGAAGGTAGCGTGTCTCTAGTCACCGAAACAAAGTCAGAACCGCACCAAAGAGTACAATCTAGTCcaatgaatttgaagaaaattctgaaCATGTCCGAGACCTCCGGCGAGGACGGGCCGCTGGACCTGTCCATGGACGTGTTGGATCTCAGCAAGAAGTCGAGGAACAAAAACGAGAACGACTTCGCCGCGTCCCACGAGCAGCAATACGGTAAAAACCAGAAGGAACTGTACAACGCTGCCAGCCACTTGTTGCTGACCGAGGCCTTCCTGAAGGCTGGCCACAGCAGCTCTCAGCCGACCTCGCTCGAAGCTCTGTACGCCAACGCCATTTACAGAAACTTCGGCACGTATCCAGCCGGCGTTGGCGCTGGCATTTTGCCGCCGTACATGTTCAACCCTCACATATTCGGCCAGGACTTCGCCATGAAGGACAGGTTGGAGAAAGACTTGGTCAGAGGTCTGCAATTGACCAGCGGAGGCACTTTGGTGGAACCGTCGACCAGCGGCGCAGGGTTCAGCGCGTACTCGCAAAACAGAGACATGAATCCTCAGTCAGCCGACGCTCAGAGCGATTACGCGAAGCTGATATCTTCCAAGATGGTAACGAGTAAGGGCGTAACGAGTCGCGACAAGCCGGACATGTCGTCGTCCAACTCGGTGAAAATGGTGATCAAGAACGGGGTGCTGATGCCTAAGCAAAAGCAACGAAGGTACAGGACCGAGAGGCCTTTCTCGTGCGAGCATTGCTCGGCGAGGTTCACGTTGAGGAGCAACATGGAGAGACACATCAAACAGCAGCACCCTCAACATTGGAGCCAAAGACCCAGGGGCGGTCACTCCACGAGAGGAAGACCTCCTACCAATCACCCTACGTTGCTGCAGAACCTTGGACAGTCGACAGCTCAGGTTCCCCAATCGTACGCCAACATTTTGCCCAAAAGCGAAGAGTCGGCAGAATTAACGAGACATTCCATTTCCGACCAGGTAAAATACGCGATCCTGACGCAAAAGCTCAGGGCGAACAAGATCGAGGACAACGACTCCGAGGAAGAGTTAGTGATAGACGAAGGCCCCCAAGAGAAAGAGTGTCAAGAATCTCAGGAACAGAAGGGGAAGAGCCTGTTGAGGGGCCAGTTGGAGGGAGGAGAATCCGCGAAGGACGCTGCGGCGAAGGAGTCGTCGAGAACCAACTCGAACGAGACTGAGCCCAAGAAGGAACCGGACACGAACGAACAGACGATGAAGGTGGAGGGGCCCGCTGAACCCGACGAAAGATCAGCTGACAAGAATCCTGCTGGCAAAGCGTGCAAAACGGGTCCGGTCGAGGTGAAGAGCGAAAAAACGGAAGACGAAAACACTGACCTGGCTAGCGTCTCGGAATTATTGGACAACGCGTGCCAGCAGTATCCGGAGTTTCAGCCGCAATATCTGAGCGACGAGGAAGGTCTAGTGGCGTCGAACAGCGAATGCCACAATTCGGGCAGCGACGAGAAGTCTGACTCGGTGAACTCGGCGAACTCGGCGAACTCGACGACCGCCtcgtcgaagaagaaaaaaaaaaaaaagaaaaagaaatccgcGTACTCGATGGCGCCGAACAAAGTGATCTGCCCGTACTGTCAACGACCGTTTCCCTGGACGTCGTCCCTGAGGAGGCACATTCTCACCCACACGGGACAAAAGCCCTACCAGTGCACTCATTGCTCGCTTCTGTTCACAACCAAGTCGAACTGCGACCGTCACCTGCTGAGGAAGCACAAGACAAACCCTAACACGGTTCACAGAGCGAGAAACTCCTCCTCTCCGGATTCCCAGCCGACGGTCAATAGCAACAACTCGTTCTCCACGAGGAACGTGCCGGAAAGACCGTACAAGTGCAATCAGTGTCCCAGCTCGACGTTCTCCACGCTGGGCAACCTGAAGAAACACCGTTCGACGAAGCACGCTCGGAAATTGAAGTCGCGGTCGGACACACCGTCCAGCGAACCTCAGAACAGTCCACCGGAATGTCCGAAGCAGAACAACGAGCAAACGGACTACGACAGCCAGTCTTCGAGCGTGTCCGAGGGCGTAGAGCCATCCTCCGTAACGGCGATCCCCAAGTCGAACTCCAACACCTCCTCGACCAACGACACGGCCAGGTCGAGAAGATCCTCGCCGCGAACGTCGCCCGGACCTAGCGACGTGCCGTTCAAATGCCACCTGTGCGACTGCGGCTTCGCCGAGCGCCAAGATTGCCTGGAACACATCAAGATGAATCACAAAAGGTCGTACGAGATGCTAGTGGCGAAAGGGGCGTTGGACATGGACATCGACGCGATGGAAGAGCAACAACAGCCACCGCCGCAACACCAGACCAGCGACGgggaagagaaacgaggacGTTTCCCGGACTACAGCAACAGGAAGGTGGTCTGCGCTTTCTGCATGAGGCGGTTCTGGTCCGCGGAGGATCTCCGACGTCACATGAGGACGCACACCGGCGAACGGCCGTTCTCCTGCGACATTTGCTGCAGGAGATTCACCCTGAAGCACAGCATGCTGCGGCACAGGAAGAAGCACGAGTCCATCGACTCGACGATGTACGTCGGCACGAGTGGCGACGAGGAGAACTCACCGTCGCAACCATCCACCATGGTTGCAACGCACGGTCAGCAACAACAGATGCTGCTAACGACGAACAACGGAAATCCTCACGTTCAGGATAGAATCGCGACTCACTTGCCGCCGACCGCCGCACCAATCGCAGCCAGCGACCCGGCACCGAGCGGATTAATCAGGTTCAATCCATACGAGAAACTGACAACGCTGTCCGGGAAACTGGCCAGTATCCCGCAGAATGTGAACCCGGAGGTGGAGAGCACGGACAACGACCTGATTTCAAACTTACTGGGGATAGGAGACAAGAGTTTCATCGACAAAGTACTGCAGGCATCGCCCGACGATGCTGCCAAATTGTTGGGAGTAAATCACAGCCACGAGTGA
Protein Sequence: TVKSGAEQRSESEAQADAASSPSSVELPESAHSCPACSAVLPTSGDLTNHIHGHNSSRSTDCSGEDEYCCNMCNRVFSSSSSLNRHLSMHTGARPYKCKYCEMAFTTNGNMNRHLKSAHRGASPHSCTDSEASTSGSNSSDSEKSKRRHLEEYNNNEITKRNSPDYVEGRQVMAVDDDEEEEEEEEPPLSLPAKRKCTYSSDNETQKRHKILLNSSRTEMKPRPDDSQNICTCPVCGRQDFGSSALLEAHLERNHPEFPAKCDSCNLSFKNHRVLNLHRFMIHFAEHPVGNTTRNLRNSVVGFNDLTFVDFSSGKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTTNSRSRTNDGQSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENVKFNPGASSSGSSGTYSSEYHEEEAQDAFAAEFRRMKLKGEFPCRLCSAIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVGRTSPRVVKDEVRKSLVFSNERSELHHQAQVHYPPPVRGEIRIIEEAKLHNATIGAHHGATNHCDKSEAFSRLGPPVAEMIHRGDDGKPGHDAKSDYSTKLDDDLESRSSEGSVSLVTETKSEPHQRVQSSPMNLKKILNMSETSGEDGPLDLSMDVLDLSKKSRNKNENDFAASHEQQYGKNQKELYNAASHLLLTEAFLKAGHSSSQPTSLEALYANAIYRNFGTYPAGVGAGILPPYMFNPHIFGQDFAMKDRLEKDLVRGLQLTSGGTLVEPSTSGAGFSAYSQNRDMNPQSADAQSDYAKLISSKMVTSKGVTSRDKPDMSSSNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPTNHPTLLQNLGQSTAQVPQSYANILPKSEESAELTRHSISDQVKYAILTQKLRANKIEDNDSEEELVIDEGPQEKECQESQEQKGKSLLRGQLEGGESAKDAAAKESSRTNSNETEPKKEPDTNEQTMKVEGPAEPDERSADKNPAGKACKTGPVEVKSEKTEDENTDLASVSELLDNACQQYPEFQPQYLSDEEGLVASNSECHNSGSDEKSDSVNSANSANSTTASSKKKKKKKKKKSAYSMAPNKVICPYCQRPFPWTSSLRRHILTHTGQKPYQCTHCSLLFTTKSNCDRHLLRKHKTNPNTVHRARNSSSPDSQPTVNSNNSFSTRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKLKSRSDTPSSEPQNSPPECPKQNNEQTDYDSQSSSVSEGVEPSSVTAIPKSNSNTSSTNDTARSRRSSPRTSPGPSDVPFKCHLCDCGFAERQDCLEHIKMNHKRSYEMLVAKGALDMDIDAMEEQQQPPPQHQTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPSQPSTMVATHGQQQQMLLTTNNGNPHVQDRIATHLPPTAAPIAASDPAPSGLIRFNPYEKLTTLSGKLASIPQNVNPEVESTDNDLISNLLGIGDKSFIDKVLQASPDDAAKLLGVNHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734122;
90% Identity: iTF_01419818;
80% Identity: -