Tcar011021.1
Basic Information
- Insect
- Tetragonula carbonaria
- Gene Symbol
- lola
- Assembly
- GCA_010645115.1
- Location
- WIUU01004401.1:7268-9605[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.38 1.1e+03 -0.1 0.2 30 45 180 196 178 196 0.79 2 5 1.4e-06 0.0043 17.3 0.0 3 38 201 236 199 242 0.78 3 5 3.8e-11 1.2e-07 31.9 0.0 5 39 253 286 250 293 0.85 4 5 0.085 2.6e+02 2.0 0.0 21 34 320 333 306 338 0.80 5 5 8e-12 2.4e-08 34.1 0.1 4 39 364 399 361 405 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAAATTGCTAACCAACATGAGATCAATCAGAGTTATTGGTTCAAATGGAATGATTATCAGAATCATCTTTCCGATGTAGTTAGACAACttttagaagaaaattgtatggTGGACGTTACCCTGGCTGCGGCTGGGGAACGCATTCATGCTCATCGCATAGTTCTTTGTGCTTGTAGCACTTTGTTTCGAGAAATATTAAGCCAAGTAAATGAAGATCATTCAACAATAATATTGAGCGATATATCTGTTCAAGATATAAGGtctattatagaatttatttaccaCGGAGAAGTAAGAGTTCCAGTTGAAAATATTAGTAGTTTATTGGATGCTGCACGTTCGTTAAAGATTTGCGGCCTTAACGAAATTGACGGGCTTGAAGAAACTTACTCTGTCGTGAACAATAggaattttaatgataataacgaAGATTCAATGACTGTAATTGGTAAGActgaagaaaatgttattgATACGTTGCAACATAATTATGAAGATTTAGAGAATCAACAAAAAGATGAGGTCATTGACAATTCTAcgctgaataaaaaaaagaaacgcagaCGTGATACAACAAAAAGAGATTACAGCGATGACATGCTAGCATCAGCAATTAATGACTTGAAAGCAGGCCAAACATTAATAGAGGCTTCTACTAAACATAATATACCACGTTCGACTTTGTACATGCGTGCTAAAGCATTAGGTATACATTTAAATGCATCAAGAAACGAATATCCTGCAGAATGTATGAAAGCTGCTATAAATGCTGTAATCGgcGGATCAAGCCTGCAGCATGCATCAGAAACGTTTAGCATACCAAAGACTGTATTATGGAGAAGGATTCAGAAAGAAGGATATCAAATATTACGTTCGGAAATGAAAAGGTCTTATGGATCAGATAAACGGGAAGCTGCAGTTAAGGCTctagaaagaggagagaattTAACAAAAGTTGCACTTGaattcaaaattccGAAAACTACTTTATTTAGAGATAAAGCACGATTGGTAGATGAAGGAAAATTGCCATTGTCATTTTGGAAGAAACGTAAGacagaaaatgaagaattaaaaaagtcTCGTTTAGAAGAAGCTGTTGCTGCTTGTAAAGGAGGAAAAATGTCGCAAGCAGCAGCGTCAATGACATATCATATTCCAAAAACAACAATATGGAGACGTCTCCAACAGGATGGTAAAAAATCAGAGCGCTCATTAAACTCGAGGAAGCAAAGAATAGCAGATTCTAAACATAATATAGAAATGAAGGTAGAAGAAGGATCTGATTTTACATATTGCGAGgtTTCGTCAGAAATTCCTATAACTTATATAGATGAAAATAGTATACCTGGAGATTCTGTGATAATATTAACAGCAGAAGATATGGACGGACTGAATCTAGAGGAAGGACGACAAATTATCGTCAACTCAGACTCAGGGCAAGAGTATATTCCTTGTGCTATAAgtatcgaagaaaattcaaattattcacaAACAGAAAGTTAG
- Protein Sequence
- MSEIANQHEINQSYWFKWNDYQNHLSDVVRQLLEENCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHSTIILSDISVQDIRSIIEFIYHGEVRVPVENISSLLDAARSLKICGLNEIDGLEETYSVVNNRNFNDNNEDSMTVIGKTEENVIDTLQHNYEDLENQQKDEVIDNSTLNKKKKRRRDTTKRDYSDDMLASAINDLKAGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASETFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLNSRKQRIADSKHNIEMKVEEGSDFTYCEVSSEIPITYIDENSIPGDSVIILTAEDMDGLNLEEGRQIIVNSDSGQEYIPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_01417619;
- 80% Identity
- iTF_01418442;