Tflu024876.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578242.1:2123201-2126592[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.58 45 5.5 0.5 3 23 39 60 38 60 0.91 2 20 0.2 16 6.9 0.4 2 23 87 109 86 109 0.91 3 20 0.67 52 5.3 3.1 3 23 134 154 133 154 0.98 4 20 0.039 3 9.2 0.7 1 21 158 178 158 181 0.95 5 20 4.4 3.4e+02 2.7 0.1 2 21 186 205 186 206 0.90 6 20 5.7 4.4e+02 2.4 0.4 1 21 213 233 209 236 0.81 7 20 0.0011 0.086 14.0 3.7 1 23 243 266 243 266 0.96 8 20 0.04 3.1 9.1 1.7 1 23 271 293 271 293 0.94 9 20 0.0099 0.76 11.0 1.3 3 23 347 368 346 368 0.96 10 20 8 6.2e+02 1.9 0.1 2 23 393 415 392 415 0.78 11 20 0.0038 0.29 12.4 0.6 3 23 440 460 439 460 0.98 12 20 0.081 6.2 8.2 1.5 1 21 464 484 464 485 0.94 13 20 0.041 3.2 9.1 0.1 1 23 526 549 526 549 0.97 14 20 1.9 1.5e+02 3.8 0.3 2 23 575 597 574 597 0.94 15 20 0.0028 0.22 12.8 0.9 2 23 621 642 620 642 0.96 16 20 0.0012 0.092 13.9 0.0 1 23 646 669 646 669 0.96 17 20 0.22 17 6.8 0.5 1 23 673 696 673 696 0.97 18 20 3.5 2.7e+02 3.0 0.3 1 23 701 726 701 726 0.89 19 20 0.00029 0.022 15.9 1.9 1 23 735 758 735 758 0.97 20 20 0.00012 0.009 17.1 0.5 1 23 768 791 768 791 0.97
Sequence Information
- Coding Sequence
- ATGTGTGTCCTGACTCTGAacTTGGAACCGCAAGGTATGGCGAAACGGAACGCAGAGGTCGTATTGCAATACTCGACAGTTTATCCGTTCAGACTAAAGGGGAATAGCTTGCTTTGCGTCTACTGCTGCGAAGAATACTCCAATCCTGACGACTTTAGACAGCATATCGATGAATCGCACAAAAAATTCACCGTGTCCACAGCCTTTTCGCACACCGGCAAAGGCAAGGAGCTACTCAAAGTTGACTGCATCAATATTAGATGCAGAATCTGTTCGGAGACGTTCGAAAATATACAGGAGGTCGCTAATCACATTCACGACCGTCATGAAATTAAAAGACTTAACCTACAATACACTATAGGCATGCAACCTTACAGATTGGATAAGGATAAATGGCTCTGTTTCATTTGTAACCTCAAATTGCCGAGTCTCACCAAATTGTGTCGCCATACAACTACACATTACCAAGGCTACACTTGTGATGTCTGTGGCAGGGCTTATTTGACTATTGATGCCTTAAGATACCATATTAGGTGCAGCCATTCAGGCAAAAATGTTTGCCGAAAGTGTTGGCAAGATTTCCCCTCTGCAGAAAAAAAGCGGGACCACGTCAAGGTGTCTACGAAATGTTGGCCGTTCGCCTGCATCTATTGCGGTGAGAGATTCCTCTCATGGGAACAGAAACAGAGCCATTTAGTGGGAATGCACGGGGTGCCGAAGTCAACGTATCCTTGTCCGGATTGTAGTAAAGTGTACCAAACGAGAAAACATTTCTATAATCACTATAAGTTGACACACACGGatgaaaattttgtatgtacATGCTGTGGTCTGAAATTTCCGTCTAAAAAGTATCTGGAGGATCATAAAATCGGTCATACCGggtaCACATTGGAAATAATTGGACGTAGCGAGAGAGATGCTCGagcaaaaaagaaaatagtCCTTGTATACCAGACGCCACAGCGGCGTAATGCCGAAATCATTCTTAGGCATTCTACTGCGTACCCTTTCAAAACACGATTTACTCAGATACTTTGTGCTTACTGCCACGACGAGTTCAACACCTTGTCAGATTTAAGATATCACATGAAAAATGAACATATCAATTCGGATTTCAAAAACGTTTTCTATAGAACTAAGGATAATCTAGTACAAGTCGATATAACCGATTTGAAATGCAAAATATGCGATGTAGACATGCAAGATGTGGAAGAACTTATGGGTCATTTGTCTAGGCAGCACGAGAAGCCTGTCAAATTTAATGCTAGTTATGGTATACTACCCTATAAGCAGAACTCAGAAAGTCATTGGTTATGCGTTTATTGTCAAAGGGTATTTTCAGAATTTGTTACGTTTAAACGTCACATAGGGACTCACTTCTTGAATTTTACTTGTGATAAATGTGGTACAATGTTTCTTTCTGATCATGCGTTACGTGATCATCATCGACAGGTCAAATGCTTCAGAGCCTCGTACAACCCTCGAAATGGAAGGGTGACCAAGTACCGAAGCAACGCAGAGATTGTCCTGCAATGCTCTACGGCTTGCCCCTTTAGGACGTGGCAGAGCAACTTTAGTTGCGTGTTTTGTAGAGTTCAGTCCAGCGATCCTGGTGGATTGCGCGTACATATGGCGACCAGACACGCGAACTACGATGTGCAAACAGCCTTTTATAAAAAGCTAGGTAAAAATTTTCTCAGCATCGATATAACTGACTTACAGTGCAAACTTTGCCTCATGCCCATCGATAATTTTGACACATTAACATATCATTTGAAGAACGATCACCAACAGCCTATAAATACTGATGCGCAATTAGGTGTGCTACCCTTTAGGCTAAACGATGGATCAGTTTGGAAATGCACTATTTGTCCTAATGAGTTCAAAGATTTCATTTCACTAAAAAAACATACTTCAAATCATTTCCAAAATTTCGTTTGTGACACTTGCGGTGAGGGTTTCATCACGGAATCCGCTATGATTGCTCACTCAAAAATCCCTCACGAAAATAAGTACAGTTGCAGTCGTTGCATCGCCACTTTTTCTACGTTAGACGAGAGGAATATACACGTCAAGACTCAACACACGAATACGCCGTACATGTGCGTTTATTGTAAAGACAAGCCCCGATTTGCTAATTGGGAACTACGTAAAAAGCATTTGATGGAAGTGCATAATTATAAAACTGGCGCTGATAAATATGAATGCGCGACTTGTCAGAAGTCTTTCAAGACGAGATCAGGGAAGTTCAATCATATGGCGAGGACACATCGGGTCAAAAAGGATTCAGTGCTCAACTACCCGTGTCCGAGTTGCCCTAAAGCATTCACGACAAAATTGTTCTTGGACAAGCATATGGCTAAAAAGCATTTTGATGTTTGA
- Protein Sequence
- MCVLTLNLEPQGMAKRNAEVVLQYSTVYPFRLKGNSLLCVYCCEEYSNPDDFRQHIDESHKKFTVSTAFSHTGKGKELLKVDCINIRCRICSETFENIQEVANHIHDRHEIKRLNLQYTIGMQPYRLDKDKWLCFICNLKLPSLTKLCRHTTTHYQGYTCDVCGRAYLTIDALRYHIRCSHSGKNVCRKCWQDFPSAEKKRDHVKVSTKCWPFACIYCGERFLSWEQKQSHLVGMHGVPKSTYPCPDCSKVYQTRKHFYNHYKLTHTDENFVCTCCGLKFPSKKYLEDHKIGHTGYTLEIIGRSERDARAKKKIVLVYQTPQRRNAEIILRHSTAYPFKTRFTQILCAYCHDEFNTLSDLRYHMKNEHINSDFKNVFYRTKDNLVQVDITDLKCKICDVDMQDVEELMGHLSRQHEKPVKFNASYGILPYKQNSESHWLCVYCQRVFSEFVTFKRHIGTHFLNFTCDKCGTMFLSDHALRDHHRQVKCFRASYNPRNGRVTKYRSNAEIVLQCSTACPFRTWQSNFSCVFCRVQSSDPGGLRVHMATRHANYDVQTAFYKKLGKNFLSIDITDLQCKLCLMPIDNFDTLTYHLKNDHQQPINTDAQLGVLPFRLNDGSVWKCTICPNEFKDFISLKKHTSNHFQNFVCDTCGEGFITESAMIAHSKIPHENKYSCSRCIATFSTLDERNIHVKTQHTNTPYMCVYCKDKPRFANWELRKKHLMEVHNYKTGADKYECATCQKSFKTRSGKFNHMARTHRVKKDSVLNYPCPSCPKAFTTKLFLDKHMAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01083667; iTF_01252117; iTF_00007450;
- 90% Identity
- iTF_01252117;
- 80% Identity
- -