Afla002034.2
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392494.1:6548611-6552368[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00088 0.056 14.2 1.0 1 23 21 44 21 44 0.90 2 20 2.2 1.4e+02 3.5 0.5 3 23 78 99 77 99 0.91 3 20 0.057 3.7 8.5 0.1 2 23 126 148 125 148 0.93 4 20 0.8 52 4.9 3.4 2 23 172 193 171 193 0.95 5 20 0.12 7.9 7.5 1.3 1 21 197 217 197 220 0.94 6 20 7.6 4.9e+02 1.9 0.2 2 21 225 244 225 245 0.89 7 20 0.0014 0.091 13.6 3.6 1 23 282 305 282 305 0.96 8 20 0.32 21 6.2 2.3 1 23 310 332 310 332 0.90 9 20 0.47 30 5.7 1.0 3 23 386 407 385 407 0.96 10 20 2.7 1.7e+02 3.3 0.2 2 23 432 454 431 454 0.89 11 20 0.011 0.72 10.8 0.1 3 23 479 499 478 499 0.98 12 20 0.079 5.1 8.1 1.5 1 21 503 523 503 524 0.94 13 20 0.041 2.6 9.0 0.1 1 23 565 588 565 588 0.97 14 20 0.81 52 4.9 0.2 2 23 614 636 613 636 0.95 15 20 0.0028 0.18 12.7 0.9 2 23 660 681 659 681 0.96 16 20 0.0012 0.075 13.9 0.0 1 23 685 708 685 708 0.96 17 20 0.22 14 6.7 0.5 1 23 712 735 712 735 0.97 18 20 3.5 2.2e+02 2.9 0.3 1 23 740 765 740 765 0.89 19 20 0.00028 0.018 15.8 1.9 1 23 774 797 774 797 0.97 20 20 0.00012 0.0074 17.0 0.5 1 23 807 830 807 830 0.97
Sequence Information
- Coding Sequence
- ATGACGTGGTCGTTGAAAGAGGGGCATTTGATGCGAGTCCACGGGAAGGAGAAGAAGATACATCCTTGTCCGGAATGTGAGAGAGTCTTTAAGTCGCGGTACTCTTACCTGGTACACTTCGAATACGTACATGCTGACTTGGAACCGCATGGTATGGCGAAACGGAACGCAGAGGTTGTATTGCAATACTCGACAGTTTATCCGTTCAGACTAAAGGGCAATCGTTTGCTTTGCGTCTACTGCTGCGAAGAATACAACAACCCTGAAGAGTTTAGACAGCATATCGATGAAACACACAAAAAATTCACCGTATCTACAGCCTTTGCCCACACCGGCAAAGGCAAGGAGCTACTCAAAGTTGATTGCATCAATTTGAGATGCAGAATCTGTTCGGAGACGTTCGAGAATATACAGGACGTCGCTAATCATATACAAGCTAGCCATGAAATCAAAAGACTTAACCTAGATTACTCCATAGGCATGCAACCTTACAGATTGGAGAAAGATAAATGGATCTGCTTCATTTGTCACATCAAATTGCCAAGTCTCACAAAATTGTGTCGCCATACAACATCACATTACCTAGGTCACACTTGCGACGTCTGTGGCAGGGCTTATTTGACTGTTGATGCCTTAAGATACCATATTAGGTGCAGCCATTCGGGTAAAAACGTTTGCAGAAAGTGCTGGCAAGATTTCCCCTCTTTGGAGAAGAAGCGAGACCACGTCAAGGTGTCTAAGAAATGTTGGCCCTTCGCATGCATCTATTGCGGTGATAGATTCCTGTCATGGGAACAAAAACAGAAGCATTTAGTGGAAATCCATGGTTTGCCTAGATCACAATACCCTTGTCCGGATTGTAGTAAAGTGTACCAATCAAGAAAACATTTCTATAATCACTATAAGTTGACTCACACGGACGAAAACTTTGTGTGCACCTGCTGCGGTCTGAAATTTACGTCAAAAAATTATTTGGATGACcacaaggtcggtcataccgGATACACGTTGGAAATAATTGGACGTAGCGAGAGAGATGCTCGAGCAAAAAAGAAAATAGTCCTTGTATACCAGACGCCACAGCGGCGTAATGCCGAAATCATTCTCAGGCATTCTACTGCGTACCCTTTCAAAACACGATTTACTCAGATACTGTGTGCTTACTGCCACGATGAGTTCAACATCATGTCAGATTTAAGATACCACATGAAAAATGAACATATCAATTCGGATTTCAAAAACGTTTTCTATAGAACTAAGGATAATTTAGTACAAGTAGATATAACCGATTTGAAATGTAAAATATGCGATGTGGACATGCAAGATGTGGAAACACTTATGAGTCATTTGTCTAGGCAGCACGAGAAGCCTGTCAAATTCAATGCTAGTTACGGTGTGCTGCCGTATAAGCAGAACTCTGAAAGTAATTGGTTGTGCGTTTATTGTCAAAGGGTTTTCCCAGAATTCGTTGCGTTTAAACGCCACATAGGGACACACTTCTTGAATTTTACTTGTGATAAATGTGGTACAATGTTTCTTTCTGATCATGCGTTACGTGATCACCATCGTCAGGTTAAATGTTTTAGAGCATCGTATAATCCTCGAAATGGAAGGGTGACCAAGTACCGAAGCAACGCAGAGATTGTCCTCCAATGCTCTACGGCTTGCCCCTTTAGGACGTGGCAGAGCAACTTTAGTTGTGTATTTTGTAGAGTTCAGTCCAGCGATCCGGGTGGACTGCGCGTTCACATGGCAACCAGACATGCAAACTACGACGTGCAAACAGCCTTTTATAAAAAGCTAGGTAAAAACTTTCTAAGCATCGATATAACTGACTTACAGTGCAAACTTTGCTTTATGCCCATCGATACTTTTGATGCATTGACATATCATTTGAAGAACGATCACCAACAGCCTATAAACACTGATGCACAATTAGGTGTGCTACCCTTTAGGTTAAACGATGGATCAATTTGGAAATGCACTATTTGTCCCAACGAGTTCAAAGATTTCATTTCACTAAAGAAGCACACTTCTAATCATTTCCAAAATTTCGTTTGTGATACTTGCGGTGAGGGTTTCATCACGGAATCCGCTATGATTGCTCACTCAAAAATCCCTCACGAAAATAAGTACAGTTGTAGCCGCTGCATCGCTACATTTTCCACGTTAGACGAGAGGAATATCCACGTCAAAACTCAACACACGAATACGCCGTACATGTGCGTGTATTGTAAAGACAAGCCCCGATTCGCTAATTGGGAACTACGTAAGAAGCACCTGATGGAAGTGCACAATTATAAAACTGGCGCTGATAAATATGAATGCGCGACATGTCAGAAGTCTTTCAAGACGAGATCAGGGAAGTTCAATCACATGGCGAGGACACATCGGGTCAAAAAGGATTCAGTGCTCAACTACCCATGTCCGAGTTGTCCTAAAGCATTCACAACAAAATTATTCTTGGATAAGCATATGGCTAAAAAGCATTTCGACGTCTGA
- Protein Sequence
- MTWSLKEGHLMRVHGKEKKIHPCPECERVFKSRYSYLVHFEYVHADLEPHGMAKRNAEVVLQYSTVYPFRLKGNRLLCVYCCEEYNNPEEFRQHIDETHKKFTVSTAFAHTGKGKELLKVDCINLRCRICSETFENIQDVANHIQASHEIKRLNLDYSIGMQPYRLEKDKWICFICHIKLPSLTKLCRHTTSHYLGHTCDVCGRAYLTVDALRYHIRCSHSGKNVCRKCWQDFPSLEKKRDHVKVSKKCWPFACIYCGDRFLSWEQKQKHLVEIHGLPRSQYPCPDCSKVYQSRKHFYNHYKLTHTDENFVCTCCGLKFTSKNYLDDHKVGHTGYTLEIIGRSERDARAKKKIVLVYQTPQRRNAEIILRHSTAYPFKTRFTQILCAYCHDEFNIMSDLRYHMKNEHINSDFKNVFYRTKDNLVQVDITDLKCKICDVDMQDVETLMSHLSRQHEKPVKFNASYGVLPYKQNSESNWLCVYCQRVFPEFVAFKRHIGTHFLNFTCDKCGTMFLSDHALRDHHRQVKCFRASYNPRNGRVTKYRSNAEIVLQCSTACPFRTWQSNFSCVFCRVQSSDPGGLRVHMATRHANYDVQTAFYKKLGKNFLSIDITDLQCKLCFMPIDTFDALTYHLKNDHQQPINTDAQLGVLPFRLNDGSIWKCTICPNEFKDFISLKKHTSNHFQNFVCDTCGEGFITESAMIAHSKIPHENKYSCSRCIATFSTLDERNIHVKTQHTNTPYMCVYCKDKPRFANWELRKKHLMEVHNYKTGADKYECATCQKSFKTRSGKFNHMARTHRVKKDSVLNYPCPSCPKAFTTKLFLDKHMAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417164;
- 90% Identity
- iTF_01252117;
- 80% Identity
- -