Prid028405.2
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596271.1:5893755-5897226[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.8e-06 0.0003 21.9 1.6 1 23 33 55 33 55 0.92 2 20 1.2 95 4.6 0.5 3 23 88 109 87 109 0.91 3 20 0.13 9.8 7.7 0.1 2 23 136 158 135 158 0.92 4 20 0.97 75 4.9 3.4 2 23 182 203 181 203 0.95 5 20 0.15 12 7.5 1.3 1 21 207 227 207 230 0.94 6 20 3.2 2.4e+02 3.3 0.4 1 21 234 254 234 255 0.90 7 20 0.0017 0.13 13.6 3.6 1 23 292 315 292 315 0.96 8 20 0.39 30 6.2 2.3 1 23 320 342 320 342 0.90 9 20 0.029 2.2 9.7 1.4 3 23 396 417 395 417 0.96 10 20 3.9 3e+02 3.0 0.1 2 23 442 464 441 464 0.87 11 20 0.014 1.1 10.7 0.1 3 23 489 509 488 509 0.98 12 20 0.096 7.4 8.1 1.5 1 21 513 533 513 534 0.94 13 20 0.049 3.8 9.0 0.1 1 23 575 598 575 598 0.97 14 20 0.98 76 4.9 0.2 2 23 624 646 623 646 0.95 15 20 0.0033 0.26 12.7 0.9 2 23 670 691 669 691 0.96 16 20 0.0014 0.11 13.8 0.0 1 23 695 718 695 718 0.96 17 20 0.26 20 6.7 0.5 1 23 722 745 722 745 0.97 18 20 4.2 3.2e+02 2.9 0.3 1 23 750 775 750 775 0.89 19 20 0.00034 0.026 15.8 1.9 1 23 784 807 784 807 0.97 20 20 0.00014 0.011 17.0 0.5 1 23 817 840 817 840 0.97
Sequence Information
- Coding Sequence
- ATGCTAGCGTCAGCTATGTGTGCTCTTACTGCGGACGTCAGTTTATCAGAAAAAGATATTTACGACAGCACACTCGTCCACATTGGGATAAAGCCGCACCAGTGTTCGGTGTGCTCCAAATCGTTTCCAAGAAAGGATAATCTGGTCCGGCACATGTGGACACACAaCTTGGAACCGCATGGTATGGCGAAACGGAACGCAGAGGTTGTATTGCAATACTCGACAGTTTATCCGTTCAGACTTAAGGGCAATCGTTTGCTTTGTGTCTACTGCTGCGAAGAATACACCAACCCTGAGGAGTTTAGACAGCATATCGATGAATCACACAAAAAATTCACCGTATCTACAGCCTTTGCCCACACCGGCAAAGGCAAGGAGCTACTCAAAGTTGATTGCATCAATTTAAGATGTAGAATCTGTTCGGAGACGTTCGAGAATATACAGGACGTCGCTAATCATTTACAGGACAGCCATGAAATCAAAAGACTTAACCTAGATTACTCCATAGGCATGCAACCTTATAGATTGGAGAAAGATAAATGGATCTGCTTCATTTGTCACATCAAATTGCCGAGTCTCACCAAATTGTGTCGCCATACAACATCACATTACCTAGGTCACACTTGCGACGTCTGTGGCAGGGCTTATTTGACTGTTGATGCCTTAAGATACCATATTAGGTGCAGCCATTCGGGTAACCACGTTTGCAGAAAGTGCTGGCAAGATTTCCCCTCTTTGGAGAAGAAGCGAGACCACGTCAAGGTGTCCAAGAAATGTTGGCCCTTCGCATGCATCTATTGCGGTGATAGATTCCTCTCATGGGAACAAAAACAGAAGCATTTAGTGGAAATCCATGGTTTGCCTAGATCACAATACCCTTGTCCGGATTGTAGTAAAGTGTACCAATCAAGAAAACATTTctataatcattataagttgaCTCACACGGACGAAAACTTTGTATGCACCTGCTGTGGTCTGAAATTTACGTCGAAAAATTATTTGGATGACCATAAGGTCGGTCATACCGgaTACACGTTGGAAATAATTGGACGTAGCGAGAGAGATGCTCGAGCAAAAAAGAAAATAGTCCTTGTATACCAGACGCCACAGCGGCGTAATGCCGAAATCATTCTCAGGCATTCTACTGCGTACCCTTTCAAAACACGATTTACTCAGATACTGTGTGCTTACTGCCACGATGAGTTCAACACCATGTCAGACTTAAGATACCATATGAAAAATGAACATATCAATTCAGATTTCAAAAACGTTTTCTATAGAACTAAGGATAATTTAGTACAAGTCGATATAACCGATTTGAAATGTAAAATATGCGATGTGGACATGCAAGATGTGGAAACACTTATGAGTCATTTGGCTAGGCAGCATGAGAAGCCTGTCAAATTCAATGCTAGTTACGGTGTGCTGCCGTATAAGCAGAACTCTGAAAGTCATTGGTTGTGCGTTTATTGTCAAAGGGTTTTCCCAGAATTCGTTGCGTTTAAACGCCACATAGGGACACACTTCTTGAATTTTACTTGTGATAAATGTGGTACAATGTTTCTTTCTGATCATGCGTTACGCGATCACCATCGTCAGGTTAAATGTTTTAGGGCCTCGTATAATCCTCGAAATGGAAGGGTGACCAAGTACCGAAGCAACGCAGAGATTGTCCTCCAATGCTCTACGGCTTGCCCCTTTAGGACGTGGCAGAGCAACTTTAGTTGTGTTTTTTGTAGAGTTCAGTCCAGCGATCCAGGTGGTCTGCGCGTTCACATGGCAACCAGACATGCGAACTACGACGTGCAAACAGCCTTTTATAAAAAGCTAGGTAAAAACTTTCTCAGCATCGACATAACTGACTTGCAGTGCAAACTTTGCTTCATGCCTATCGATACTTTTGATGCATTAACATATCATTTGAAGAACGATCACCAACAGCCTATAAACACTGATGCACAATTAGGTGTGCTACCATTCAGGTTAAACGATGGATCAGTTTGGAAATGCACTATTTGTCCCAACGAGTTCAAAGATTTCATTTCACTAAAGAAGCACACTTCAAATCATTTCCAAAATTTCGTTTGTGACACTTGCGGCGAGGGTTTTATCACGGAATCCGCTATGATTGCTCACTCGAAAATCCCTCACGAAAATAAGTACAGTTGTAGCCGCTGCATCGCTACATTTTCCACGTTAGACGAGAGGAATATCCACGTCAAGACTCAACACACGAATACGCCGTACATGTGTGTTTATTGTAAAGACAAACCCCGATTCGCTAATTGGGAACTACGCAAGAAGCACCTGATGGAAGTGCACAATTATAAAACTGGCGCTGATAAATATGAATGCGCGACATGTCAGAAGTCTTTCAAGACGAGATCAGGGAAGTTCAATCACATGGCGAGGACACATCGGGTCAAAAAGGATTCAGTGCTCAACTACCCGTGTCCGAGTTGTCCTAAAGCATTCACAACAAAATTATTCTTGGATAAGCATATGGCTAAAAAGCATTTCGACGTCTGA
- Protein Sequence
- MLASAMCALTADVSLSEKDIYDSTLVHIGIKPHQCSVCSKSFPRKDNLVRHMWTHNLEPHGMAKRNAEVVLQYSTVYPFRLKGNRLLCVYCCEEYTNPEEFRQHIDESHKKFTVSTAFAHTGKGKELLKVDCINLRCRICSETFENIQDVANHLQDSHEIKRLNLDYSIGMQPYRLEKDKWICFICHIKLPSLTKLCRHTTSHYLGHTCDVCGRAYLTVDALRYHIRCSHSGNHVCRKCWQDFPSLEKKRDHVKVSKKCWPFACIYCGDRFLSWEQKQKHLVEIHGLPRSQYPCPDCSKVYQSRKHFYNHYKLTHTDENFVCTCCGLKFTSKNYLDDHKVGHTGYTLEIIGRSERDARAKKKIVLVYQTPQRRNAEIILRHSTAYPFKTRFTQILCAYCHDEFNTMSDLRYHMKNEHINSDFKNVFYRTKDNLVQVDITDLKCKICDVDMQDVETLMSHLARQHEKPVKFNASYGVLPYKQNSESHWLCVYCQRVFPEFVAFKRHIGTHFLNFTCDKCGTMFLSDHALRDHHRQVKCFRASYNPRNGRVTKYRSNAEIVLQCSTACPFRTWQSNFSCVFCRVQSSDPGGLRVHMATRHANYDVQTAFYKKLGKNFLSIDITDLQCKLCFMPIDTFDALTYHLKNDHQQPINTDAQLGVLPFRLNDGSVWKCTICPNEFKDFISLKKHTSNHFQNFVCDTCGEGFITESAMIAHSKIPHENKYSCSRCIATFSTLDERNIHVKTQHTNTPYMCVYCKDKPRFANWELRKKHLMEVHNYKTGADKYECATCQKSFKTRSGKFNHMARTHRVKKDSVLNYPCPSCPKAFTTKLFLDKHMAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417164;
- 90% Identity
- iTF_01417164; iTF_01083667; iTF_00007450;
- 80% Identity
- -