Tflu024103.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578240.1:6583251-6586608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.029 2.2 9.6 2.0 1 23 278 301 278 301 0.95 2 18 8.3e-07 6.4e-05 23.9 1.5 1 23 306 328 306 328 0.99 3 18 0.0015 0.12 13.6 2.0 1 23 358 381 358 381 0.96 4 18 0.00047 0.036 15.2 0.5 2 23 442 464 441 464 0.96 5 18 3.7e-05 0.0029 18.7 1.3 1 23 470 493 470 493 0.95 6 18 0.0042 0.32 12.2 0.2 2 21 498 517 497 518 0.94 7 18 0.54 42 5.6 0.1 3 23 528 549 526 549 0.91 8 18 0.3 23 6.4 0.7 1 23 554 577 554 577 0.94 9 18 0.0012 0.092 13.9 0.2 2 23 590 611 589 611 0.96 10 18 0.0068 0.52 11.6 3.0 1 23 617 639 617 639 0.98 11 18 4.9 3.8e+02 2.5 0.1 2 10 645 653 644 655 0.86 12 18 0.00014 0.011 16.9 0.5 1 23 676 698 676 698 0.97 13 18 2.7 2.1e+02 3.4 0.2 3 23 704 724 703 724 0.90 14 18 0.033 2.6 9.4 2.2 2 23 739 761 738 761 0.96 15 18 0.0041 0.31 12.3 3.7 1 23 767 789 767 789 0.98 16 18 0.0023 0.17 13.1 6.0 2 23 796 817 795 817 0.96 17 18 0.0012 0.091 13.9 1.3 1 23 823 846 823 846 0.96 18 18 2.3 1.8e+02 3.6 0.7 2 23 852 874 851 874 0.94
Sequence Information
- Coding Sequence
- ATGACGAATGAAGAAGACTCTGACCATGAAGAAATCTACGCAATACACGTTACGAACGATGCAAATAATATAGAATGGCTGAAACAGAGGCTAAACAAAGTATGGAGCTGCCCAAAGTTCTGTGGCATTTGCTTGGAAGATGGTGGTAACCTATACTCCCTTGAAATGGAGTTCATTTTCGGTAGACAGACTACTGCCAAGTCTTTGGAGTACctcattaattatgtatttaatggTGAAATCGAAGACGTCCTAACAAGCTTACACATCTGCGAACAGTGCGCAGAAAAAACTATACAATCATACCAATTTATACACAATACAAAGCAGACTGCAAAAATCATTAATAGCTGTGTAAATGACGTTCTATCCAAAGTTTTAGATATCGATGATCAATTGGAAGGTTCTAAAGATTATGAAAATGCAAATGTTATGATAGTTTTAGAAACTGATACAGAAATGAATGACTACATTGATGAtattactacatatattacagaAATTGTGcccaaagaaaaaaattatacaatcaACACTTCTCAAGAAATTCCCAAAGATATGCTAAAGGTTTTCGAACAAGCTAAAGTACCAGAGGTTAAAGAAACAAAAGCACCACAAGAAACACTCAAAACACCAATTAAAACTCTCAAACCTCAAGAAAATGTTGTTAGAGAATTTAAAAAACCGAAAGCCATAATACGACAAGTACCAGAAGAAAGAAAAGCTGTCAAAACTGAAGGAACACCGAATATATCTTTGAAGGAGGgaaagattataataaaaccCTTATCAGCAAAGAGAGACCCAAACTTTACTccaatatataatacatacagaTGCACACAATGCCCCGATATATTCACAACGTTTAAATCATTGAAAGAtcatgaaaaacaaaaacatatgtCGTTCGTTTACAGTTGCAATATTTGTGACAAGTCTTATAACACTCAACAATATTTGAATGTGCATTTAAAGACGCATGCTAAAGCTAGGTGCAAGATTTGTAGAATAATTTTACCTGAAGAAGATTTGCTTCAACATTTGAAATCTAAACACGAAATGCTTGTGCATATATGCAAATTTTGCGACCAAGTTTACTATTCTCCAGAATCATTGGAAACACATTTTAAAACGACACATTTGGTTAATGATACTAGATCGCAATCACAATGCGTAATGTGTCTCAGAAACTTCAAGGAAGATCAAATGAGAAAGCATAGATGCAAATTCTTCTGTCCTGAATGTATCGTTATGCCTTGTGTACACCACAGCTACCTAATGTCTTATAGGGAACAAATTTTAAATCATGTTTCTATAGTAAAATGCATGGATTGTGATTATAGTACTCGGAGAAAGGAATACCTGATCAGTCATGTAAATCGAGAGCATTTAGGTCATCATCCATTCACTTGTGACGATTGCGGGCAacaattttatactaaaatgaGCTTAAAAACGCATATAATACAATTCCATCAAGATCTATGCATTTGCGATTATTGTGATAATGTAGTGAAAGATAAAACTACGTTAGAAGCTCATATGAAAGCTTGTAAATTGGTTATAAGGTCGTACGGTTGCGATATGTGTGTAGCTTCGTTTGACACTGAACAAGAATTTTTGAGGCATGTAGATTTGAGACATAACGATGGTGTATACCCatgtaatttatgtaaaagaGAATTTTTGACACTTATCAAGCTTGAAGAGCATCACGCGAGAGTACACAGTGGTATACCATATAAGAAAAGAAGGAAGTTTATAGAATGCACATTATGTGATATAAAATTCAAAGATACAAGAGAATTGATGCAGCATGAGCAAATACATGGACCTGGCGTGAAATATCCATGTAAAGTTTGCACGAAACAGTATACCAGTTTAAAGAAACTATATATGCATAAACAAAGGCATTACACAGAGAGATTGCAATGTAAAACTTGTAATAAGTCTGTGACAGCAACATTCTACCCTCAACATGTGGTCCGCTGTGCTTACAAATCCGAAGCACCATCTAAGAGCCACATTTGTGAAACTTGTGGCAAAATTTTCCAAGTTGTGTCATTGTTGAAGATACACCAAAGAATACACCTAAAACCAGAGCCATGCTCGTTGTGCAATAAATTAGTTAAACCAGcatattacaaaaaacatatgGATCAAGCTCATAGCGGGACAAAACCACCGCCTCCTAGCAATATTAAAGGTATATCGTGTGATTTGTGTGGTCATGCGATGAGGAAGAAATGCGATTTAGAAGCCCATATGAACAGATACCATTTGAAGATTAAACCATTTGTCTGTCACATCTGTAGCAAAGATTTTTGTGGGAAGATGAGATTGAAAGAGCACTTAGCGACTCACACGAGTGACAATAGTTGTTTCTGTTCAGTTTGCGGGAAAAAGTTCGCTAATCGTGTATGTTTGAAGATGCATTTCCGTATGCACACTGGCGAGAATCCATATTCTTGTGATATTTGTGGAGAGAAATTCAGATCTTCAAGTATAATGAAGACGCATCGTTTGAAAAAGCATTTAGAAAAGACTGTCAGTTGTCCACTTTGTGACGGcatgttttatattgttagAGACATGAGACATCACTTTAAAAAAGTTCATTGGAAGTTCAAGGACAAGCCATTTAATCCGAGAGAAGTCAAAGAATTGGATGAGAAGTATTATCACTTATTTGAAGATGGTAGATTGCCAAAATTGGATGGAGACTAA
- Protein Sequence
- MTNEEDSDHEEIYAIHVTNDANNIEWLKQRLNKVWSCPKFCGICLEDGGNLYSLEMEFIFGRQTTAKSLEYLINYVFNGEIEDVLTSLHICEQCAEKTIQSYQFIHNTKQTAKIINSCVNDVLSKVLDIDDQLEGSKDYENANVMIVLETDTEMNDYIDDITTYITEIVPKEKNYTINTSQEIPKDMLKVFEQAKVPEVKETKAPQETLKTPIKTLKPQENVVREFKKPKAIIRQVPEERKAVKTEGTPNISLKEGKIIIKPLSAKRDPNFTPIYNTYRCTQCPDIFTTFKSLKDHEKQKHMSFVYSCNICDKSYNTQQYLNVHLKTHAKARCKICRIILPEEDLLQHLKSKHEMLVHICKFCDQVYYSPESLETHFKTTHLVNDTRSQSQCVMCLRNFKEDQMRKHRCKFFCPECIVMPCVHHSYLMSYREQILNHVSIVKCMDCDYSTRRKEYLISHVNREHLGHHPFTCDDCGQQFYTKMSLKTHIIQFHQDLCICDYCDNVVKDKTTLEAHMKACKLVIRSYGCDMCVASFDTEQEFLRHVDLRHNDGVYPCNLCKREFLTLIKLEEHHARVHSGIPYKKRRKFIECTLCDIKFKDTRELMQHEQIHGPGVKYPCKVCTKQYTSLKKLYMHKQRHYTERLQCKTCNKSVTATFYPQHVVRCAYKSEAPSKSHICETCGKIFQVVSLLKIHQRIHLKPEPCSLCNKLVKPAYYKKHMDQAHSGTKPPPPSNIKGISCDLCGHAMRKKCDLEAHMNRYHLKIKPFVCHICSKDFCGKMRLKEHLATHTSDNSCFCSVCGKKFANRVCLKMHFRMHTGENPYSCDICGEKFRSSSIMKTHRLKKHLEKTVSCPLCDGMFYIVRDMRHHFKKVHWKFKDKPFNPREVKELDEKYYHLFEDGRLPKLDGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252100; iTF_00007373; iTF_00762001; iTF_01083677; iTF_01416169;
- 90% Identity
- -
- 80% Identity
- -