Tfer010939.1
Basic Information
- Insect
- Tetanocera ferruginea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958299015.1
- Location
- OY282640.1:157204958-157210381[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 2.4e+03 -1.1 1.3 32 73 50 91 39 111 0.68 2 3 5.5e-100 9e-96 322.1 38.9 1 299 185 463 185 464 0.93 3 3 1.1 1.7e+04 -3.9 6.0 1 37 489 528 474 538 0.64
Sequence Information
- Coding Sequence
- ATGTCTGAGGAGCACATTAATCAAGGCTCTGCCGCTGCTacaaaagaaaaccaaaataataataatgtcaaCAGAGTACCTAAACACGATACCGAGCATAATTCGAGTGATTATGATGAAATCGGCGAAGAATTCAACTTCAGCGACAGTGATTTAGATGAAGAATTTGAAGACTGTGCCAGTACCGCTCATTCAAATAATGCTGATAACGACCGGTTAACGTCTGCAACAACAACTACCACTGCTGAGCATTTAGACTCAGCAGCAAGCACTGAATGCGACGATGAATTGAGTGACTTACCTGTTCAAAAAACCTCGATAGATGACGTAATTGTGGAAAACGAcgttagcaaaacaaaaaagcaaagtAGTGTTAATGAGAACCAGAATACTAAGCTGGttccagcagcaacagcaacagcagccagAGCtcaaaatgctcataaaaataataatgatgatgagaTTGATAATGAGAATGATGATGACTACTATAGTGATGAGCCGGAAGATGAGTTGATTGTTCAGTTTTTGGGAGAAGCAAATCGCATTgcTGAAGCCCGCTTGACGGCTCGTAGGCAAGCGCGCACTGAAGCGCGTGAAATACGCATGCGTGAACTGGAACGACAACAAAAGAATCAAGAACAAAATGCGGATAGAGTCTTCGATATGCATACCACACCAGCGCTGGAACCCATAACACGTGCGCGTCATGGTATTACAAACTCAGTATCATCGCGCCGTAGCAGTGAAGACTCCCTGGAGGAGGAGGGACGCAGTTTGCTGGACCCAAAGCAGGAGTTAAAGGATGCTGAAGAACGCTTTCGCAAAGCAATGATCGCCAATGCCCAAATGGACAACGAGCGCGCATCGCAGTCTTATCAAATAGAGCACCTGAAGGATCAATTGGAAGAATTGAGCGAATCACATATGCAAATACAGCGTGAACTCAAGGATAAAACACGTGATTGTAATGCGTTACAAAGGAATCTGGATAAGCTAACTGACGAACTAAAACTGGTGCATGGACAACTGAATGAACGTGATGCTTTGATAGCGGAGCAGGGTCTGGTCGTAGTCGCGGTGGAAAACGAAGATGGATCAGATGCGAAACGTACTTTAATCACAGCGGAGAATGCGCAATTATTAAGTTCGGTGCAGGGTTCTTTAGATGTACGACTGAAAAGATtcaatgaagaaaaacaaaatcttcgCGAAGAAATACAACGCCTCAGAACACAATTTGAAAACTACAAATCCAAAGATATAGAAACAGCTAATAACAAAGCCGCCCAACTTTCCGAAGAAGAAAGTGAAGCACAGCGAGAAGCCAATAAACTGCTTTCCGATTACAAGTTCAGACTACAAAAAGCGGAACAAGATATAGCTAGTCTTCAGGCTAAtctagcaagatcggaaacacAATTAATTCGTTATAAAAGTGCTGCAGAGGCTGCAGAAAAGGCTGAAGCTGAGTTAAAGGGCGATCGTAGAAAACTACAAAGAGAGaatcgTGAGGCATTGGAGCGCTTAGAAGAGCTGGAGACATCGAATAAACATCTCCTCAAAAGGCTAGACAAATTAAAGAATGCCAAAAGTGCCTTGCTCAAAGAGCTTTAA
- Protein Sequence
- MSEEHINQGSAAATKENQNNNNVNRVPKHDTEHNSSDYDEIGEEFNFSDSDLDEEFEDCASTAHSNNADNDRLTSATTTTTAEHLDSAASTECDDELSDLPVQKTSIDDVIVENDVSKTKKQSSVNENQNTKLVPAATATAARAQNAHKNNNDDEIDNENDDDYYSDEPEDELIVQFLGEANRIAEARLTARRQARTEAREIRMRELERQQKNQEQNADRVFDMHTTPALEPITRARHGITNSVSSRRSSEDSLEEEGRSLLDPKQELKDAEERFRKAMIANAQMDNERASQSYQIEHLKDQLEELSESHMQIQRELKDKTRDCNALQRNLDKLTDELKLVHGQLNERDALIAEQGLVVVAVENEDGSDAKRTLITAENAQLLSSVQGSLDVRLKRFNEEKQNLREEIQRLRTQFENYKSKDIETANNKAAQLSEEESEAQREANKLLSDYKFRLQKAEQDIASLQANLARSETQLIRYKSAAEAAEKAEAELKGDRRKLQRENREALERLEELETSNKHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01181155;
- 90% Identity
- -
- 80% Identity
- -