Pcor011372.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- lrrfip2
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000350.1:449244-459168[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.31 4.4e+03 -2.1 0.2 32 64 73 105 62 119 0.68 2 3 7.2e-101 1e-96 325.0 38.2 1 299 206 484 206 485 0.92 3 3 1 1.5e+04 -3.8 6.5 2 39 511 551 495 559 0.65
Sequence Information
- Coding Sequence
- ATGGGCACAAAGTTGAATAATGGACAAATTTCGAGATATCTCGGGATGTCTGAGGAAAACATTAATCAGCGTTCTTCCGACGCTACAAAAGAAACAAAAAATATTAATAATAATAATAATAATATTAATAACAATATCAACAAAGTATCTCAACATGATAAAGAGCATAATTCGTGTGATTATGATGAAATCGGTGAAGAATTCAATTTCAGCGATAGTGATTTAGATGAAGAATTTGAAGATTGTACCAGTACCGCTTATTCAAATAATGCTGATAACGACCGGTTAACAGCTGCAACAACAACAACAACCACTACACTCGAGCATTTGGGCTCTACAGCAAACATTGAATGCGATGAATTAAGTGACTTACCTGTTCAAAAAACCTCCACAGATGACGTAATTGTGGAAAACGTTAGCAAAACAAAAAAGCAAAACAGTGTTAATGAGAACCCAAAAACTAAGTTGGTTCCAGCAGTTGTCGTAGCTCAAAATGCTCATAAAAATAATAATGGTGATGATGATGAGATTGATAATGAGAATGATGATGACTACTATAGCGACGAGCCGGAGGATGAGTTGATTGTTCAGTTTTTGGGAGAAGCAAATCGCATTGCTGAAGCCCGCTTGACGGCTCGCAGACAAGCGCGCACTGAAGCACGTGAAATACGCATGCGTGAACTGGAACGACAACAGAAGGACCAAGATCAAAATGCCGATAGAGTCTTTGACATGCATACCACACCCGCGCTAGAACCTGTAACACGTGCGCGTCATGGTATTACGAACTCAGTATCATCTCGTCGCAGCAGTGAAGACTCTCTGGACGAGGAGGGACGCTGCTTACGTGACCCAAAACAAGAATTAAAGGATGCTGAAGAGCGCTACCGCAAAGCAATGATCGCCAATGCCCAAATGGACAATGAACGTGCATCGCAATCTTATCAAATAGAGCATCTAAAGGATCAACTGGAGGAATTAAGCGAATCACACATGCAAATTCAGCGCGAGCTCAAGGATAAAACACGTGATTGCAATGCGCTTCAAAGGAATCTGGTTAAACTAAATGATGAATTGAAACTGGTGCATGGACAACTGAACGAACGTGATGCTCTTATAGCTGAACAGGGTTTGGTTGTAATCGCAGTAGAAAATGAAGATGGATCAGATGCGAAACGTACTTTAATATCAGCAGAGAATGCGCAACTTTTGAGTTCGGTACAGGGTTCCTTAGATGTACGACTGAAGAGATTCAATGAAGAAAAGCAAAATCTTCGCGCAGAAATTGAACGCCTCAGAACCCAGTTGGAAAACTACAAATCTAAAGATATTGAAACAGCCAATAATAGAGCTGCCCAACTTTCCGAAGAAGAAAGTGAAGCACAGCGAGAAGCCAATAAAATGCTTTCCGATTACAAGTTCAGACTACAAAAGGCGGAACAAGATATAGCCAGCCTTCAGGCTAATCTGGCAAGATCGGAAACACAATTGATGCGTTATAAAAGCGCTGCGGAGGCTGCAGAAAAGGCTGAAGCTGAGTTAAAGGGCGATCGCAGAAAACTGCAAAGAGAAAACCGTGAGGCAATGGAGCGTCTAGAAGAGCTGGAGACATCGAATAAGCATCTCCTTAAGCGGCTAGACAAATTGAAAGATGCCAAAAGTGCCCTTCTCAAAGAGTTGTAA
- Protein Sequence
- MGTKLNNGQISRYLGMSEENINQRSSDATKETKNINNNNNNINNNINKVSQHDKEHNSCDYDEIGEEFNFSDSDLDEEFEDCTSTAYSNNADNDRLTAATTTTTTTLEHLGSTANIECDELSDLPVQKTSTDDVIVENVSKTKKQNSVNENPKTKLVPAVVVAQNAHKNNNGDDDEIDNENDDDYYSDEPEDELIVQFLGEANRIAEARLTARRQARTEAREIRMRELERQQKDQDQNADRVFDMHTTPALEPVTRARHGITNSVSSRRSSEDSLDEEGRCLRDPKQELKDAEERYRKAMIANAQMDNERASQSYQIEHLKDQLEELSESHMQIQRELKDKTRDCNALQRNLVKLNDELKLVHGQLNERDALIAEQGLVVIAVENEDGSDAKRTLISAENAQLLSSVQGSLDVRLKRFNEEKQNLRAEIERLRTQLENYKSKDIETANNRAAQLSEEESEAQREANKMLSDYKFRLQKAEQDIASLQANLARSETQLMRYKSAAEAAEKAEAELKGDRRKLQRENREAMERLEELETSNKHLLKRLDKLKDAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415015;
- 90% Identity
- -
- 80% Identity
- -