Basic Information

Gene Symbol
-
Assembly
GCA_943736035.1
Location
CALSEY010000646.1:180868-194075[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 7.4e-06 0.0015 20.2 1.0 1 23 223 245 223 245 0.98
2 31 0.0032 0.67 11.9 1.9 1 23 268 291 268 291 0.96
3 31 0.00027 0.056 15.2 1.0 2 23 298 320 297 320 0.96
4 31 0.0013 0.27 13.1 0.5 1 21 340 360 340 361 0.95
5 31 0.0039 0.82 11.6 0.1 2 23 460 481 459 481 0.95
6 31 0.03 6.2 8.8 0.2 1 23 487 510 487 510 0.87
7 31 0.00014 0.029 16.2 0.1 1 23 581 604 581 604 0.96
8 31 0.028 5.8 8.9 0.4 1 23 610 633 610 633 0.96
9 31 0.14 30 6.7 1.5 1 23 646 668 646 668 0.97
10 31 4.8e-05 0.01 17.6 0.8 3 23 713 734 711 734 0.96
11 31 0.011 2.3 10.2 1.1 2 23 798 821 797 821 0.94
12 31 3.7 7.7e+02 2.2 0.0 2 23 830 852 830 852 0.83
13 31 0.027 5.6 9.0 0.1 2 23 859 881 858 881 0.95
14 31 1.5e-05 0.0032 19.2 1.2 1 23 889 911 889 911 0.98
15 31 5.8 1.2e+03 1.6 0.8 3 23 944 966 942 966 0.83
16 31 0.00025 0.052 15.4 3.3 1 23 969 992 969 992 0.97
17 31 0.0065 1.4 10.9 0.4 2 23 999 1021 998 1021 0.95
18 31 0.0038 0.8 11.6 5.1 1 21 1048 1068 1048 1069 0.95
19 31 0.0032 0.66 11.9 1.8 2 23 1083 1104 1082 1105 0.93
20 31 1.7 3.6e+02 3.3 2.7 1 23 1108 1130 1108 1131 0.95
21 31 0.06 13 7.9 3.1 2 23 1138 1161 1137 1161 0.92
22 31 1.1 2.4e+02 3.8 0.2 2 23 1169 1191 1169 1191 0.95
23 31 2.9 6.1e+02 2.5 0.0 2 23 1198 1220 1197 1220 0.88
24 31 0.27 56 5.8 2.7 2 23 1229 1251 1229 1251 0.96
25 31 0.091 19 7.3 0.3 2 23 1257 1279 1257 1279 0.95
26 31 0.97 2e+02 4.1 2.9 1 23 1341 1364 1341 1364 0.93
27 31 0.00015 0.031 16.1 2.0 1 21 1392 1412 1392 1413 0.95
28 31 0.59 1.2e+02 4.8 1.3 2 23 1513 1535 1512 1535 0.93
29 31 1.9 4.1e+02 3.1 0.5 2 23 1542 1564 1541 1564 0.94
30 31 0.82 1.7e+02 4.3 2.5 1 23 1575 1597 1575 1597 0.97
31 31 0.74 1.5e+02 4.4 0.5 3 19 1606 1622 1606 1624 0.96

Sequence Information

Coding Sequence
ATGGAGTCCAAGGAACGGTACGCCGAGATGTGCAGGCTATGCGCTTCTTACGACGCTATTAAAATGGACATTTTCGGTAAAGAGGGACGGAATCGTAAACTAGTCGACAAAATTCAGACCTGCCTTCCCTTCAAGATTGCAGAAAATGACAGATTACCAAAATGCGTGTGTTATCGATGCATGTACAATTTGGAAAATTTTTACGACTTTCGAACAGCGTGTATCAACGCTGTTGCCTTGCTTGAAAGATGTTTGCCACCCTATCACAATGACACCGGAGATGGGACACAAAATAATAACCATCAGTTTTCTCAGCTGCGTTCAGAGCTGCTTAAGGAAAAAGAAAACATGCCAATACTCATTCCAGAGGCACCGATAGTGAACCCAAATGGGGCTTTAGGAACTCCGCCTAGATTGAATTCAGATGGAGAAGCAGATCATGAAATTGAAGAGATACTTTATCAGGGTATCAGCGATGACGGTGTGGATGATCACGACGATCCTAAATCTGACGAATACGAAATGGATATGGAAACAAATCCCAGTGATTTTTTGGAAATGACATCAATGGTTACTGAGGATGCGGACGAAGGAGATGCTGCAACTATAACGCCCGTTAATAACGAATCAACCCTGTTTCAACACACTTCTGAACAACACGAAGTATACGTCTGCTCATTATGCAACAAAGCGTTCAGTTCAAAGGGACACTTGTCATTACACGCTAGAATTCACGTTGGTGCTGGTGATATAGTCGGGGAAAAAGTTATAACTGATGATCATACTTCGTACAAAAGACCTTATCAATGCGATTTATGTAATAAATCTTATTCCACTGCTAAACATAGATGGGGTCATGTATCTACGACTCATAGAGGACATCCAGCCGTAACATGCAGGTACTGTTCGAGAATTTATTCGACAAGAACAAATCTTGAAGAACATATAAAGTCTCGTCATGCAGGACTACCTCCGCCACTTGATGTGCCTATTCCCTACATTCAACAAGACAATAAATTCCAGTGTAGAACATGTCCTAAAATGTATACAAATGTGACTGATTTAAATAAGCATAGTAGAGTATGCGCCGGTGATAAAAAGAAGGAATTAAACAGCAGCAGCAGCAAGAATTCTTTGTTAAAAAAAAAAGGCGCCGTTGATACATCAGATTTGTCAAGTATAGATTCTGACGACGGTGGAAAAGATTATAGAGACGCCGAAGCTAAGTTGGCTAAAAATCCACAGTTAACAATACTCAAACAAGCTTTAACTAAGAGAGACAATTTGAAGAGAGATTATGAAGAAACTAAGACTAATCATAAGCCGAAGAAAATAGCAAGAACAGATAGCAGCGAAACAGATGGACAAAAGAGGTGGTACTGTGAGACGTGCCCGCAAAGTTTCATATCTGTAGATAGTCTGAAGGAACACGAACTTGTACATGACGCCGACAAACCTTTTGTTTGTATCTTGTGCGAAAAGGATTTTACACTGAAATCATCACTAAGCAGACACATTGTAGCATCTCACGGCGTAGATCCCAGTCCTATTATTGATAGTGACAAATGCTTAAAGAGGCCTACTTCGCATGTTTCGCATGTTTTGAACAAACAACCAGAACGGGCAATAAACGACAACAACAGAGAAGTTCACGAGTCCTCATCATCTCCTCAGGGTAATCCTGAAAATGAATCCGAACATGAAAGCAGTCCCGATAACATGATTGAAATTGAGACAGTTTTTGTCTGCGAGATTTGTACTCGAGATTTTAACGATCGTGCATCGTTGTGGCTACATATTAGAGCTACTCACAAGGAATATGCAGCATTTGCATGCGGTGTGTGCTTAAAAATTTGTGCTGATAATACGCAGCTACTCAATCATGTCAACATGTATCACGGAGGATCTAAGCTACAAGTTTCGGAACAAAGAAGGTACAGCTGTACAATTTGCGGGCGTCAGCATGATTCGAGAAAAAAGTTGATAACGCATGTGTCTATACACAACGTAGACCCTGGCTACGACCCAGCCAGTTTCGTTCAGCTAAATAGCAACTATTACAATGAAAATTTTAACAGCAACGAAGCAAATGATCAGACTTTGGAGTTTGATGGTGAGGATGGTGAAAAAATGGATTGCTATATTTGTTACAAGTCTTTTCCCAGCGAGGATCACCTCATACGTCATCAAAGAAATGCTCACAAGTCTGAACCACTGGCACCAATGGGAGAATCAGCTGGCAATGGAAGCGGGACTGGTTCTGTGAGTGGTAATGGAAACCGAGCACAGTATCATTTATTTTTCGTATGCGAATTATGTGGTAGTTCTCACCCAAGCAAATGGGAACGCTGGCTTCATGTCAGTAGTATTCACAGCAATGAGCCTGCTATTAGATGTGAACGGGACACCTGCGGAAAAATTTTCGCTACAAGATCACTGCGCAACGATCATATTCAACATCATACTGCTCAAGGCGCTTCTCCAAACACTTGTGAAATATGTGGCAAACTTTGGGGTAGTCGAGTTGATTATTGGAAACATGTAATGGGTGTTCATTCGGATACTGTGCCTTTAATTTGTGGAGTTTGTCTCAAGGTTTTCCCAGATGTTATTCAACTTAGCACACATGTAAAAACTAAGCATTGGCCACTTACGAATGGGGACTTTAGTTGCGATATTTGTGGCAGACCGTACTCTAATAAATCAAAAATGTCTAGACACAGAAAAATTCATGGACTAGATGTAGACAGCTACATAAATAGCAGTATCCACGAATCAATTAATGATTCGACAAGGATTGACCATAGCATTAATGACTCAGATTTAAACTGCGAAATGTGTGCTAATTTGAAATTTTCAGAATTAGAAGAACTCTGTAATCACAGACGAAATGTACACGGCTTATTCCCTTGTGATTTATGCAACAAGTGTTACGGTAGGACTTCACATCTGTGGAAACACGTTAATCGAGTCCATAAAGGACATGAGGATGTGACATGTCGGTATTGTTTAAAGACAAGTGCATCGAAGGAACATTTAGCTGCCCATATTGCTAAAATTCATAGGTACGAACCAGAGACCAAAAAAGAAATGAGAGAATCGTTAAATTTCAAATCTGCAAATCTGGACGACGAAACGCCCCATCATTGCGAAAAATGTAACAAAGGCTTCCACAAGCGATATTTATTACGTCGTCACATGAAGGGGTGTCAGAACTACAGGAAAGACCCTGGAGCATTGTTAACTCGGTGCAGAGCATGTGAAAGAATATTTAAAGATCGTGCGAGTCTACAAAAACACATAGAAAACCATCACAGCACTTATACTTGTCATTTATGTAAAGAAGATGTAACTTCAAAGTTAGGTATCATGACTCACAACAGAGTTCACCATATGAATCATCCTGATTTGACCTGTGATCACAACAATTGTAAGAAATTATTCAGAACTAGAGAAGACTTGGAATCCCACAAAAAAGATCACAAGTATCACAATACACCAAATGTTTGTGATTTTTGTGGAGACACTGTCGAAAATAAGCTCAAATTAAAAATGCACATATTGTCACTACATCGAAATGAGATTGGTGTTTCATGCGGTGTTTGTTTGATTCCAATGAAGGATCCCAAAGAATTGAAAAGACATGTTGAAGAAGTTCATGATCACATTTTATCAAAGCCAAACACTTGTCAAGTCTGCGGGAAGCAGTATGCTTCAAAGTGGAAGGCTTTTGATCACACCAAAAAATGTCATGGTAAAGTATTCAGAACTTGTAAACAGTGTCTTGCTGTTTTTACCAAAGATGAGGAGCTGCGAAATCATTACGCTAGCATCCACAATGTTCCAAAAGATCAGCTGTCTGGTTTTGATTATCGATTGGAAACCCCGACCGGAAAACCAGAGGACTACGAGTCAGCGGATTTACGTATTAAAGAAGAACCGGACGATCTGGACTTCGACATAGATCCATGCGACGAAGATTCTAATGACCGAAAAAGAAAGAAGCCTTTAACTGACACGTTCGACTGCAATTTATGTCACGAGATATTTTTGAATAATGAAACGTTGTCCCAACATTATCATAATGTTCATAACATGAATCCAGCTAAGAGATTGAAAAAATCAAAGAAAGAAGGCTCAGGTGGTAAAAGAAAAATGAGAAACAGAGAAAACTTTGAATGCAAAAATTGTGGGAAACAGTTCTGCACCAAAACATTGTTTTGGAATCATATCAATGTCTGTACAAGACGTAATAGTGTAAATAAAGATAGTAACAACAGTTTCCCCACTTCTATTCTAGAAGCACATTTGAAAAATAATAATCAAATAAAAAAAGAAGAACCTGACCCTGTTTTGACTGAATCGAATTTAAATATACCAGATTTCAATTTGTTTGAAGATATAAACATTCAACTTTCAGGTCAAAAACCTGTGCCCGATCTTATGCCAATATCTTCAGCGAAAGGACATTCAAGTAGCAAATGCTCGCGTAAAGATTCTAGAAAAGTTTACGATGAATCTACAAATACAGAATGTGCCTGTGAAGTTTGCGGCAAGCAATGGCCAGCAAAGAAACATTTGTGGCAACATTTGATTCGTTTTCATAGAGCAGAAGCGGCTGTTACCTGCGGCGTATGCTTAAAGCTATGTCAGACGTACGAGGATTTGGCAAATCATTTGAAAGCAACTCACGGAGCAATTTTAACTGGTGAAGGAAACAACTTTACATGTAAAACTTGCGGGAGATATCATAATGCACGAAGCAAATTATTGTTGCATATGAGTATTCATATCAATTATAATGGTAGTGAGTGGTGTCAAAATTGTCATCAAGGTTTTGAAGATGAAGAGAAGCTGAAAGAACATTCGGCAAATTGTACTGGAAAAGAAATCGAGTTTGATGATCACAGTAACGACATTGATGCTAGAGTTAAAAATGAAAATGACAACGAAGATAAGGGTAGCTTGATAGACGACGATAATTCAATGATGGAAGAAGTAGAAGAGGTAGAATTTGAGTCCGAGGTAGAAGGTGATGCGACAGAAAATCACGACGATAGTAATAGTGATAATTCAGAGAGCGAAGCCAGCAATGATAGCTTAAGCgacgaggaagaaaatgacgatgagaatgaagtggaagaggatgacgttgatgaagataatgaagttgacgaagaGTCTAGAACACATAGTAGAGTAACTGGAGATGTTAGCAGTGATTCTCAGAGTGAAGATGAAGATTCTGAACATCAAGGCGAAGATTTGTCTGAACACAGTGAAAATGAGCAAAATGAGAAGGAGACAAACAATGAAAGCTTTCTTAGCGGAACTGACGACACAAACGTCATGGAAAATGAAGACTGTGAGGATGACAAGGTTCAAGATCAAGAAAACTCTGTGGATATAAAAAATAATATTATCGGCGCAGACGTAGATCAGGATTGTAAAGAACTTGCAGATCATTCAGAATCCCAAACTATCAACGAAAAAGAATTTGAAGAAATACCTTGCGAGTTACAAAATCAAGCTTTGTTCAAAGAAGAACCTGGGGATTACTCCGATGATGAAGGTCCGCCTATATTAAGTCCAATGGTACCATTACCTGTGGCAAATGAAACAGAGGAGCCGGACACAGATCAGTTGGATAAAATCCGGCATAAATTAAGTCCAATGGTACCAACTTCGGTTAGTACTGAGATTCCCGCAGTTAAGTGTGAGTTGGAGCAGATCAAGAATGAAATAGAACAGGGAGAATCGTCATTTTCAGCATCTAACTTGATGGAAGTGGACGAAAGTACTAAAGCAAGCGAAGACCCAGATGTGGCTACGAATACTTTAACAGAAATCCTGGAGTCTGACTCAGATAACGAGCAAGAAGAGGAAAAGGAAGTTGAAAATGATAATGCTGATGATGACGAAGCTTCAGCTTCTGAAGTTGAGGAAAAAGCTTCTGAAATTGGAGAGGCTTCCGAAAATGAGAATGCAACGGTAGACGAAGAAGAACAAGAAGAACATGAAGAACAAGAAGAGGAAGCGGAAGAGGACGAGGTACAGGTACAGGTACAGGTACAGGAACAGGAAGAACAAGAAGAGGAAGCGAAAGAGGACGAGGTACAGCTACAGGAACAGGAACAGGAAGAACAAGAAGAAGAGGAAGAAGAAGAGGAAGAACGAGAGGAAAAGGAACAGGAAAAAGAAAAGAAAGACGAAGAAGAGGAAGACGAAGATGAAGATGAAGATGAAGGAGGAGAAGGAGAAGGAGAACAAGAAGATGAAATAGAGGAAAGAGAAGAAGATCAGTCAGAGAATGATCATGATGAAGATATTTTGGAAAATTGCGGTGAACAAAGGGAAGATAATTTCGAAGAAATCCAAAATACAGTTGACATAACAGAGGATATCTTTGAGGAGAATTCAGATGGGGAAATAGAGGATATGGAGATAAGTGAGAATACGAACACTGTACAAATACCGAATTTAGATGGAACTGTACTTATGGTTGCCAATGACGCGGATGGAAATCAGATATTGATACAGCGTAATGTTTCTGATTTGCCCAACGAAGATTCGAATCCCGAAGTAACAGAGTATATTTTAGAAGGTGAAAATGAATACGCAATAGATAATTACGAGATGGCGTCTAACGATGAAGATGTAAGACAACAGTCTGAAAATAGTCCTGATATTTCAGAGGACGAAAATAATGTTGAAGCAGTGCAGGACGATGCGCAATTATCGATTATGAGTGCCAAAAGTAAAGTGTCAAGGACGTAA
Protein Sequence
MESKERYAEMCRLCASYDAIKMDIFGKEGRNRKLVDKIQTCLPFKIAENDRLPKCVCYRCMYNLENFYDFRTACINAVALLERCLPPYHNDTGDGTQNNNHQFSQLRSELLKEKENMPILIPEAPIVNPNGALGTPPRLNSDGEADHEIEEILYQGISDDGVDDHDDPKSDEYEMDMETNPSDFLEMTSMVTEDADEGDAATITPVNNESTLFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDIVGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPLDVPIPYIQQDNKFQCRTCPKMYTNVTDLNKHSRVCAGDKKKELNSSSSKNSLLKKKGAVDTSDLSSIDSDDGGKDYRDAEAKLAKNPQLTILKQALTKRDNLKRDYEETKTNHKPKKIARTDSSETDGQKRWYCETCPQSFISVDSLKEHELVHDADKPFVCILCEKDFTLKSSLSRHIVASHGVDPSPIIDSDKCLKRPTSHVSHVLNKQPERAINDNNREVHESSSSPQGNPENESEHESSPDNMIEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICADNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENFNSNEANDQTLEFDGEDGEKMDCYICYKSFPSEDHLIRHQRNAHKSEPLAPMGESAGNGSGTGSVSGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSIHSNEPAIRCERDTCGKIFATRSLRNDHIQHHTAQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSTHVKTKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDVDSYINSSIHESINDSTRIDHSINDSDLNCEMCANLKFSELEELCNHRRNVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASKEHLAAHIAKIHRYEPETKKEMRESLNFKSANLDDETPHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCKEDVTSKLGIMTHNRVHHMNHPDLTCDHNNCKKLFRTREDLESHKKDHKYHNTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEEVHDHILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTKDEELRNHYASIHNVPKDQLSGFDYRLETPTGKPEDYESADLRIKEEPDDLDFDIDPCDEDSNDRKRKKPLTDTFDCNLCHEIFLNNETLSQHYHNVHNMNPAKRLKKSKKEGSGGKRKMRNRENFECKNCGKQFCTKTLFWNHINVCTRRNSVNKDSNNSFPTSILEAHLKNNNQIKKEEPDPVLTESNLNIPDFNLFEDINIQLSGQKPVPDLMPISSAKGHSSSKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCQTYEDLANHLKATHGAILTGEGNNFTCKTCGRYHNARSKLLLHMSIHINYNGSEWCQNCHQGFEDEEKLKEHSANCTGKEIEFDDHSNDIDARVKNENDNEDKGSLIDDDNSMMEEVEEVEFESEVEGDATENHDDSNSDNSESEASNDSLSDEEENDDENEVEEDDVDEDNEVDEESRTHSRVTGDVSSDSQSEDEDSEHQGEDLSEHSENEQNEKETNNESFLSGTDDTNVMENEDCEDDKVQDQENSVDIKNNIIGADVDQDCKELADHSESQTINEKEFEEIPCELQNQALFKEEPGDYSDDEGPPILSPMVPLPVANETEEPDTDQLDKIRHKLSPMVPTSVSTEIPAVKCELEQIKNEIEQGESSFSASNLMEVDESTKASEDPDVATNTLTEILESDSDNEQEEEKEVENDNADDDEASASEVEEKASEIGEASENENATVDEEEQEEHEEQEEEAEEDEVQVQVQVQEQEEQEEEAKEDEVQLQEQEQEEQEEEEEEEEEREEKEQEKEKKDEEEEDEDEDEDEGGEGEGEQEDEIEEREEDQSENDHDEDILENCGEQREDNFEEIQNTVDITEDIFEENSDGEIEDMEISENTNTVQIPNLDGTVLMVANDADGNQILIQRNVSDLPNEDSNPEVTEYILEGENEYAIDNYEMASNDEDVRQQSENSPDISEDENNVEAVQDDAQLSIMSAKSKVSRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00939802;
80% Identity
-