Tscr006388.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022228.1:22481965-22494916[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 2.1e-05 0.0027 18.9 0.9 1 23 223 245 223 245 0.98 2 31 0.0035 0.44 11.9 1.9 1 23 268 291 268 291 0.96 3 31 0.0003 0.037 15.3 1.0 2 23 298 320 297 320 0.96 4 31 0.0014 0.18 13.1 0.5 1 21 340 360 340 361 0.95 5 31 0.0043 0.54 11.6 0.1 2 23 457 478 456 478 0.95 6 31 0.032 4 8.8 0.2 1 23 484 507 484 507 0.87 7 31 0.00015 0.019 16.2 0.1 1 23 576 599 576 599 0.96 8 31 0.031 3.8 8.9 0.4 1 23 605 628 605 628 0.96 9 31 0.16 19 6.7 1.5 1 23 641 663 641 663 0.97 10 31 5.3e-05 0.0065 17.6 0.8 3 23 708 729 706 729 0.96 11 31 0.012 1.5 10.2 1.1 2 23 793 816 792 816 0.94 12 31 4 5e+02 2.3 0.0 2 23 825 847 825 847 0.84 13 31 0.029 3.7 9.0 0.1 2 23 854 876 853 876 0.95 14 31 1.7e-05 0.0021 19.2 1.2 1 23 884 906 884 906 0.98 15 31 6.4 7.9e+02 1.6 0.8 3 23 939 961 937 961 0.83 16 31 0.00027 0.034 15.4 3.3 1 23 964 987 964 987 0.97 17 31 0.0071 0.89 10.9 0.4 2 23 994 1016 993 1016 0.95 18 31 0.0042 0.52 11.6 5.1 1 21 1043 1063 1043 1064 0.95 19 31 0.0035 0.43 11.9 1.8 2 23 1078 1099 1077 1100 0.93 20 31 1.9 2.4e+02 3.3 2.7 1 23 1103 1125 1103 1126 0.95 21 31 0.066 8.2 7.9 3.1 2 23 1133 1156 1132 1156 0.92 22 31 1.3 1.6e+02 3.9 0.2 2 23 1164 1186 1164 1186 0.95 23 31 3.2 4e+02 2.6 0.0 2 23 1193 1215 1192 1215 0.88 24 31 0.29 36 5.8 2.7 2 23 1224 1246 1224 1246 0.96 25 31 0.1 12 7.3 0.3 2 23 1252 1274 1252 1274 0.95 26 31 1.1 1.3e+02 4.1 2.9 1 23 1336 1359 1336 1359 0.93 27 31 0.00016 0.02 16.1 2.0 1 21 1387 1407 1387 1408 0.95 28 31 0.64 80 4.8 1.3 2 23 1508 1530 1507 1530 0.93 29 31 2.1 2.7e+02 3.1 0.5 2 23 1537 1559 1536 1559 0.94 30 31 0.9 1.1e+02 4.3 2.5 1 23 1570 1592 1570 1592 0.97 31 31 0.81 1e+02 4.5 0.5 3 19 1601 1617 1601 1619 0.96
Sequence Information
- Coding Sequence
- atggAGTCCAAGGAACGGTACGCCGAGATGTGCAGGCTATGCGCTTCTCACGACGCTATTAAAATGGACATTTTCGGTCAAGAGGGACGGAATCGGCAGCTAGTCGACAAAATTCAGACCTGCCTTCCCTTCAAGATTGCAGAAAATGACAGATTACCAAAATGCGTGTGCTATCGATGCATGTacaatttggaaaatttttacgacTTCCGAACAGCGTGTATTAACGCTGTTGCCTTGCTTGAGAGATGTTTGCCACCCTATCACAATGACACCGGAGATGGGACACAAAATAATAACCATCAGTTTTCTCAGCTGCGTTCAGAGCTGCtcaaggaaaaagaaaacatgCCAATACTCATTCCAGAGGCACCGATAGTAAACCCAAATGGCGCTTTAGGAACTCCGCCTAGATTGAATTCAGATGGAGAAGCAGATCATGAAATTGAAGAGATACTTTATCAGGGTATCAGCGATGACggtCCAGATGATCACGACGATCCTAAATCTGACGAATATGAAATGGATATGGAGACTAATCCCAGTGATTTCTTGGAAATGACATCAATGGTTACTGAGGATGCGGAGGAAGGAGATGCTGCAACTATAACGCCTGTTAATAACGAATCATCTCTGTTTCAACACACTTCTGAACAACACGAAGTATACGTGTGCTCATTATGCAGCAAGGCATTCAGTTCAAAGGGACACTTGTCACTTCACGCTAGAATTCACGTCGGAGCTGGAGATATAGTCGGAGAAAAAGTCATAACTGACGATCATACCTCGTACAAAAGACCCTATCAATGCGATTTATGTAATAAATCTTATTCCACTGCTAAACATAGGTGGGGTCATGTATCTACAACTCATAGAGGACATCCAGCCGTAACATGCAGGTACTGTTCGAGGATATATTCGACAAGAACAAATCTTGAAGAGCATATTAAGTCGCGTCATGCAGGACTACCTCCGCCGCCTGATGTGCCTATTCCCTACATTCAACAAGACAATAAATTCCAGTGTAGAACATGCCCTAAAATGTATACAAATGTGACTGATTTGAATAAGCATAGTCGAGTATGCGCTGGGGATAGAAAGAAGGAATTAAACAGTAAGAATTCtttgttaaaaagaaaaggcGCTGTTGATACATCAGATTTGTCAAGTATAGATTCTGACGATGGTGGAAAAGATTATAGAGACGCCGAAGCTAAGTTGGCTAAGAATCCACAGTTAACAATACTCAAACAAGCTTTGACTAAAAGAGACAATTTGAAAAGAGATTATGAAGAAACTAAGACTAATCATAAGCCGAAGAAAATAGCAAGAACAGACAGCAGCGAAACAGATGGACAGAAGAGGTGGTACTGTGAGACGTGTCCACAGAGTTTCATATCTGTAGATAGTCTGAAGGAACACGAACTTGTACACGATGCTGACAAACCTTTTGTTTGTATCTTGTGCGAAAAGGATTTTACACTGAAATCATCACTAAGCAGACACATTGTAGCATCCCATGGCGTCGATCCAAGTCCTATTATTGATAGTGACAAATGCCTAAAAAGGCCTACCGTTTCCCATGTTTTAAACAAACAAACAGAACGAGCAATAAACGATAACAACAGAGAAATTAATGAGTCCTCATTATCTCCTCAGGGTAATCCTGAAAATGAGTCCGAGCATGAAAGCAGTCCTGATAACATGATCGAAATTGAGACAGTTTTTGTCTGTGAGATTTGTACTCGCGATTTTAACGATCGTGCATCGTTGTGGCTACATATTAGAGCCACTCACAAGGAATATGCAGCATTTGCATGCGGTGTGTGCTTAAAGATCTGTGCTGATAATACGCAGCTACTCAATCATGTCAACATGTATCACGGGGGATCTAAGCTACAAGTTTCGGAGCAAAGAAGGTACAGCTGTACAATTTGCGGGCGGCAACAtgattcgagaaaaaaattgataacacATGTCTCAATACACAATGTAGACCCTGGCTACGACCCAGCCAGTTTCGTTCAGCTAAATAGTAATTACtacaatgaaaatttcaacagcAACGAGGCAAATGATCAGACTTTGGAGTTTGATGGTGAGGATGGTGAAAAAATGGATTGCTATATTTGTTACAAGTCTTTTCCCAGCGAGGATCACCTCATACGTCATCAAAGAAATGCTcacaagTCTGAACCACTGGCACCAATGGGAGAATCTGCTGGCAATGGAAGCGGGACTGGTTCTGTGAGTGGTAATGGAAACCGAGCACagtatcatttatttttcgtatgCGAATTATGTGGTAGTTCTCACCCAAGCAAATGGGAACGCTGGCTTCATGTCAGTAGTATTCACAGCAATGAGCCTGCTATTAGATGTGAACGGGACACCTGCGGAAAAATTTTTGCTACAAGATCACTGCGCAATGATCATATTCAACATCATTCTGCTCAGGGCGCTTCTCCAAACACTTGTGAAATATGTGGCAAACTTTGGGGTAGTCGAGTTGATTATTGGAAGCATGTGATGGGTGTTCATTCGGATACTGTGCCTTTAATTTGTGGAGTTTGTCTTAAGGTTTTCCCGGATGTTATTCAACTTAGCACTCATGTAAAAACAAAGCATTGGCCACTTACGAATGGGGACTTTAGTTGCGATATTTGTGGCAGACCGTACTCTAACAAATCAAAAATGTCTAGACACAGGAAAATTCATGGGCTAGATGTAGACAACTACATAAACAGCAGTATCCATGAATCAATTAATGACTCGACAAGGATTGACCATAGCATTAATGACTCAGATTTAAACTGCGAAATGTGtgctaatttgaaattttcagaattagaAGAACTCTGTAATCACAGACGAAATGTTCATGGCTTATTCCCTTGTGATTTATGTAACAAGTGTTACGGAAGGACCTCACATCTGTGGAAACACGTTAATAGAGTCCATAAAGGACATGAGGATGTGACATGTCGGTATTGTTTAAAGACAAGTGCATCAAAGGAACATTTAGCTGCCCATATTGCTAAGATTCATAGGTACGAACCAGAGACCAAAAAGGAAATGAGAGAATCGTTAAATTTCAAGTCTGCAAATGTGGATGACGAAACGCCCCATCATTGCGAAAAATGTAACAAAGGCTTCCACAAGCGATATTTATTACGTCGTCACATGAAGGGGTGTCAGAACTATAGGAAAGACCCTGGAGCATTGTTAACTCGGTGCAGAGCATGTGAAAGAATATTTAAAGATCGTGCAAGTCTACAAAAACATATAGAAAACCATCACAGCACTTACACTTGTCATTTATGTAAAGAAGATGTAACTTCAAAGTTAGGTATCATGACTCACAACAGAGTTCACCACATGAATCATCCTGATTTGACCTGTGATCACAACAATTGTAAGAAATTATTCAGAACTAGGGAAGACTTGGAATCCCACAAAAAAGATCACAGGTATCACAATACACCAAATGTTTGTGATTTTTGTGGAGACACTGTCGAAAATAAGCTCAAATTAAAAATGCACATATTGTCGCTACATCGAAATGAGATTGGTGTTTCATGCGGGGTTTGTTTGATTCCAATGAAGGATCCCAAAGAATTAAAAAGACATGTTGAAGAAGTCCATGGCCACATTTTATCGAAGCCAAACACTTGTCAAGTCTGTGGAAAACAGTATGCTTCAAAGTGGAAGGCTTTTGATCACACCAAAAAATGTCATGGGAAAGTATTCAGAACTTGTAAACAGTGTCTTGCTGTTTTTACCAAAGATGAGGAGCTGCGAAATCATTACGCTAGCATCCATAATGTTCCAAAAGATCAGCTGTCTGGTTTCGATTATCGATTAGAAACCCCGATCGGAAAACCAGAGGACTATGAGTCAGTAGATTTACGTATTAAAGAAGAACCAGATGATCTGGACTTTGACATAGATCCATGCGACGAAGATTCTAATGAACGGAAAAGAAAGAAGCCTCTAACTGACACGTTCGACTGCAATTTATGTCACgagatatttttgaataatgaaacGTTGTCCCAACATTATCATAATGTCCATAATACGAATCCAGctaaaagattgaaaaaatccaaaaaagaAGGCTCCGGTAGTAAAAGGAAAATGAGAAACAGAGAAAACTTTGAATGCAAAAATTGTGGGAAACAGTTCTGTACCAAAACTTTGTTTTGGAATCATATCAACGTCTGCACAAGACGTAATAGTGTAAATAAAGATAGTAACAACAGTTACCCCACTTCTATTCTAGAAGcacatttgaaaaataataatcagataaaaaaagaagaacctGACCCTGTTTTGACTGAATCGAATTTAAATATACCAGATTTCAATCTGTTTGAAGATATAAACATGCAGCTTTCAGGGCAAAAACCTGTGCCCGATCTTATGCCGATATCTTCAGCGAAAGGACATTCAAGTAGCAAATGCTCGCGTAAAGATTCTAGAAAAGTTTACGACGAATCTACAAATACAGAATGTGCCTGTGAAGTTTGCGGTAAGCAATGGCCAGCAAAGAAACATTTATGGCAACATTTGATTCGTTTTCATAGAGCAGAAGCAGCTGTTACCTGCGGCGTATGTTTAAAGCTATGCCAGACGTACGAGGACTTGGCAAATCACTTGAAAGCAACTCACGAAGCAATTTTGACTGGCGAAGGAAACAACTTTACTTGTAAAACTTGCGGGAGATATCATAATGCACGAAGCAAATTATTGTTGCATATGAGTATTCATATCAATTATAGTGGTAGTGAGTGGTGTCAAAATTGTCATCAAGGTTTCGAAGACGAAGAGAAGTTGAAAGAGCATTCGGCAAATTGTACTGGTAAAGGAATCGAGTTTGATGATCACAGTAACGACATCGATGCTAGagtcaaaaatgaaaatgacaacGAAGATAAGGGTAGCTTGATAGATGACGATAATTCGATGATGGAAGAAGTAGAAGAGGTAGAATTTGAGTCTGAGGTAGAAGGTGATGCGACAGAAAATCACGACGATAGTAATAGTGATAATTCAGAGAGCGAAGCCAGCAATGACAGCTTAAGCGATGAGGAAGAAAATGACGATGAGAATGAAGTGGAAGAGGAAGACGttggtgaagataatgaagtTGATGAAGAGTCTAGAACACATAGTAGAGTAACTGGAGATGTTAGCAGTGATTCTCAGACTGAAGATGAAGATTCTGAGCATCGAGACGAAGAGTTGTCTGAACACAGTGAAAATGAGCAAAATGATAAGGAAACCAACAATGAAAGCTTTCTCAGCGGAACTGACGACACAAATGTCATGGAAAATGAAGACTGTGAGGATGACAAGGTTCAGAAGCAAGAGAACGCTGTGGATACAAAAAATCATATTATCGATGCGGACGTAGATCAGGATCGTCAAGAACTTGCAGATCATTCACAATCCCGAACTAtcaatgaaaaagaatttgaagaaagacCTTGCGAGCTACAAAATCAAGCTTTGTTCAAAGAAGAACTTGGGGATTACTCCGATGATGAAGGTCCACCTATATTGAGTCCAATGGTACCGTTACCTTTGGTAAATGATACAGAGGAGCCGGACACTGATCAGTTGGATAAAGTCCGGCATAAATTAAGTCCAATGGTACCAACTTCTCTCAGTATCGAGAGGCCCGCAGTTAAATGTGAGTTGGAGCAGATCAAGAATGAAATAGAACAGGGAGAGTCGTCATTTTCAGCATCTAATTTGATGGAATTGGACGAAAGTACTAAAGCAAGTGAAGATGCAGATGTGGCTGCTAATACTTTAACAGAAATCCTGGAATCTGACTCAGATAACGAGcaagaagaggaaaaggaactTCAAGATGATGAtgttgatgatgatgaagcTTCAGCTTcagaagttgaagaaaaaacttcTGTAATTGGAGAGGCTTGCGAAAATGAGAATGCAACAGCAGacgaagaaaaacaagaagaacGGGAAGAACAGGAAGAGGAAacggaagaggaagaggaacaagaagaggaagaggaagaggaagagcaagaggaagaggaacaagaagaggaagaggaagaggaagagcaAGAGGAAGAgcaagaggaaaaggaaatggaaaagaaagatgaagaagaggGAGATGAAGACGAAGATAAAGatggaggaggaggagaagaaggagaaggagaagaacaagaagatgaaagagaggaaagagaagaTCAGTCAGAGAATGATCATGATGAAGAAACTTCAGAAAATTGTGGTGAACAGAGGGAAGATAATTCTGGAGAAATAGAAAATGCAGTTGAGATAACAGAGGATATTTTTGAGGAGAATTCAGATGGAGAACTAGAGGATATGGAAATAAGTGAAAATACGGACACTGTACAAATACCGAATTTAGATGGAACTGTACTTATGGTTGCCAATGATGCGGATGGAAATCAGATATTGATACAGCGTAATGTTTCTGATTTGCCCAACGAAGATTCGAATCCCGAAGTGACAGAGTATattttagaaggtgaaaatgagtaCGAAATAGATAATTACGAGATGGCGTCTAACGACGAAGATGTAAGACAACAGTCTGAAAATAGTCCTGATATTTCAGAGGACGAGAATAATGTTGAAGCAGTGGAAGATGCGCAAATATCGATTATGAGTGCCAAAAGTAACGTGTCAAGGACGTAA
- Protein Sequence
- MESKERYAEMCRLCASHDAIKMDIFGQEGRNRQLVDKIQTCLPFKIAENDRLPKCVCYRCMYNLENFYDFRTACINAVALLERCLPPYHNDTGDGTQNNNHQFSQLRSELLKEKENMPILIPEAPIVNPNGALGTPPRLNSDGEADHEIEEILYQGISDDGPDDHDDPKSDEYEMDMETNPSDFLEMTSMVTEDAEEGDAATITPVNNESSLFQHTSEQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDIVGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPPDVPIPYIQQDNKFQCRTCPKMYTNVTDLNKHSRVCAGDRKKELNSKNSLLKRKGAVDTSDLSSIDSDDGGKDYRDAEAKLAKNPQLTILKQALTKRDNLKRDYEETKTNHKPKKIARTDSSETDGQKRWYCETCPQSFISVDSLKEHELVHDADKPFVCILCEKDFTLKSSLSRHIVASHGVDPSPIIDSDKCLKRPTVSHVLNKQTERAINDNNREINESSLSPQGNPENESEHESSPDNMIEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICADNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENFNSNEANDQTLEFDGEDGEKMDCYICYKSFPSEDHLIRHQRNAHKSEPLAPMGESAGNGSGTGSVSGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSIHSNEPAIRCERDTCGKIFATRSLRNDHIQHHSAQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSTHVKTKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDVDNYINSSIHESINDSTRIDHSINDSDLNCEMCANLKFSELEELCNHRRNVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASKEHLAAHIAKIHRYEPETKKEMRESLNFKSANVDDETPHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCKEDVTSKLGIMTHNRVHHMNHPDLTCDHNNCKKLFRTREDLESHKKDHRYHNTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEEVHGHILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTKDEELRNHYASIHNVPKDQLSGFDYRLETPIGKPEDYESVDLRIKEEPDDLDFDIDPCDEDSNERKRKKPLTDTFDCNLCHEIFLNNETLSQHYHNVHNTNPAKRLKKSKKEGSGSKRKMRNRENFECKNCGKQFCTKTLFWNHINVCTRRNSVNKDSNNSYPTSILEAHLKNNNQIKKEEPDPVLTESNLNIPDFNLFEDINMQLSGQKPVPDLMPISSAKGHSSSKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCQTYEDLANHLKATHEAILTGEGNNFTCKTCGRYHNARSKLLLHMSIHINYSGSEWCQNCHQGFEDEEKLKEHSANCTGKGIEFDDHSNDIDARVKNENDNEDKGSLIDDDNSMMEEVEEVEFESEVEGDATENHDDSNSDNSESEASNDSLSDEEENDDENEVEEEDVGEDNEVDEESRTHSRVTGDVSSDSQTEDEDSEHRDEELSEHSENEQNDKETNNESFLSGTDDTNVMENEDCEDDKVQKQENAVDTKNHIIDADVDQDRQELADHSQSRTINEKEFEERPCELQNQALFKEELGDYSDDEGPPILSPMVPLPLVNDTEEPDTDQLDKVRHKLSPMVPTSLSIERPAVKCELEQIKNEIEQGESSFSASNLMELDESTKASEDADVAANTLTEILESDSDNEQEEEKELQDDDVDDDEASASEVEEKTSVIGEACENENATADEEKQEEREEQEEETEEEEEQEEEEEEEEQEEEEQEEEEEEEEQEEEQEEKEMEKKDEEEGDEDEDKDGGGGEEGEGEEQEDEREEREDQSENDHDEETSENCGEQREDNSGEIENAVEITEDIFEENSDGELEDMEISENTDTVQIPNLDGTVLMVANDADGNQILIQRNVSDLPNEDSNPEVTEYILEGENEYEIDNYEMASNDEDVRQQSENSPDISEDENNVEAVEDAQISIMSAKSNVSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_01413611;
- 80% Identity
- -