Basic Information

Gene Symbol
-
Assembly
GCA_944452905.1
Location
CALYCC010000089.1:17064-29885[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 7.2e-06 0.0011 20.2 1.0 1 23 222 244 222 244 0.98
2 30 0.0031 0.48 11.9 1.9 1 23 267 290 267 290 0.96
3 30 0.00026 0.04 15.3 1.0 2 23 297 319 296 319 0.96
4 30 0.0013 0.19 13.2 0.5 1 21 339 359 339 360 0.95
5 30 0.00044 0.067 14.6 0.1 2 23 456 477 455 477 0.95
6 30 0.044 6.7 8.3 0.2 2 23 484 506 483 506 0.85
7 30 0.00014 0.021 16.2 0.1 1 23 575 598 575 598 0.96
8 30 0.027 4.2 9.0 0.4 1 23 604 627 604 627 0.96
9 30 0.14 21 6.7 1.5 1 23 640 662 640 662 0.97
10 30 4.7e-05 0.0072 17.7 0.8 3 23 707 728 705 728 0.96
11 30 0.011 1.7 10.2 1.1 2 23 792 815 791 815 0.94
12 30 3.6 5.5e+02 2.3 0.0 2 23 824 846 824 846 0.84
13 30 0.026 4 9.0 0.1 2 23 853 875 852 875 0.95
14 30 1.5e-05 0.0023 19.2 1.2 1 23 883 905 883 905 0.98
15 30 0.00059 0.091 14.2 1.5 1 23 963 986 963 986 0.97
16 30 0.0063 0.97 11.0 0.4 2 23 993 1015 992 1015 0.95
17 30 0.0037 0.57 11.7 5.1 1 21 1042 1062 1042 1063 0.95
18 30 0.0031 0.48 11.9 1.8 2 23 1077 1098 1076 1099 0.93
19 30 1.7 2.6e+02 3.3 2.7 1 23 1102 1124 1102 1125 0.95
20 30 0.059 9 7.9 3.1 2 23 1132 1155 1131 1155 0.92
21 30 1.1 1.7e+02 3.9 0.2 2 23 1163 1185 1163 1185 0.95
22 30 2.9 4.4e+02 2.6 0.0 2 23 1192 1214 1191 1214 0.88
23 30 0.26 40 5.9 2.7 2 23 1223 1245 1223 1245 0.96
24 30 0.089 14 7.3 0.3 2 23 1251 1273 1251 1273 0.95
25 30 0.94 1.4e+02 4.1 2.9 1 23 1335 1358 1335 1358 0.93
26 30 0.0014 0.21 13.0 1.7 3 21 1388 1406 1386 1407 0.95
27 30 0.57 88 4.8 1.3 2 23 1507 1529 1506 1529 0.93
28 30 1.9 2.9e+02 3.2 0.5 2 23 1536 1558 1535 1558 0.94
29 30 0.8 1.2e+02 4.3 2.5 1 23 1569 1591 1569 1591 0.97
30 30 0.2 31 6.2 0.3 3 20 1600 1617 1600 1619 0.95

Sequence Information

Coding Sequence
ATGGAGTCCAAGGAACGGTACGCCGAGATGTGCAGGCTATGCGCTTCCTACGACGCTATTAAAATGGACATTTTTGGTCAAGAGGGACGGAATCGGCAGCTAGTCGACAAAATTCAGACCTGCCTTCCCTTCAAGATTGCAGAAAATGACAGATTACCAAAATGCGTGTGCTATCGATGCATGTACAATTTGGAAAATTTTTACGACTTTCGAACAGCGTGTATTAACGCTGTTGCCTTGCTTGAGAGATGTTTGCCACCCTATCACAATGACACCGGAGATGGGACACAGAATAACCTTCAGTTTTCTCAGCTGCGTTCAGAGCTGCTCAAGGAAAAAGAAAACATGCCAATACTCATTCCAGAGGCACCGATAGTGAACCCAAATGGTGCTTTAGGAACTCCGCCTAGATTGAATTCAGACGGAGAAGCTGATCACGAAATTGAAGAGATACTTTATCAGGGTATCAGCGACGACGGTGCGGATGATCACGACGATCCTAAGTCTGACGAATATGAAATGGATATGGAGACGAATCCCAGTGATTTTTTGGAGATGACATCAATGGTTACTGAGGACGCGGAGGATGAAGATACTGCAACCATAACACCTGCTAATAACGATTCAACCTTATTTCAACACACTTCTGAACAACACGAAGTATACGTGTGCTCATTATGCAACAAGGCATTCAGTTCAAAGGGACACTTGTCACTACATGCTAGAATTCACGTCGGAGCTGGAGATATAGTCGGGGAAAAAGTCATAACCGACGATCATACCTCGTACAAAAGACCCTATCAATGCGATTTATGCAATAAATCTTATTCCACTGCTAAACATAGATGGGGTCATGTATCGACAACTCATAGGGGACATCCGGCCGTAACATGCAGGTACTGTTCGCGAATTTATTCAACGAGAACAAATCTTGAAGAACATATAAAATCGCGTCATGCAGGACTGCCTCCGCCGCCTGATGTGCCTGTTCCATACATTCAACAAGACAATAAATTCCAGTGTAGAACATGTCCGAAAATGTATACAAATGTGACTGATTTGAATAAGCATAGTCGAGTATGTGCCGGGGATAGAAAGAAGGAATTAACCAGTAAGAATTCTTTGTTGAAAAGAAAAGGCGCCGTTGATACATCAGATTTATCGAGTATAGATTCTGACGATGGTGGAAAAGATTACAGAGACGCCGAAGCCAAGTTGGCTAAGAATCCGCAGTTGACAATACTCAAACAAGCATTGACTAAGAGAGATAACTTGAAAAGGGATTATGAAGAAACTAAGACTAATCATAAGCCGAAGAAAATATCAAGAACAGACAGCAGCGAGACGGATGGACAGAAGAGGTGGTACTGTGAGATATGTCCGCAGAGCTTCACATCTGTAGACAGTCTGAAGGAACATGAACTTGTTCACGATGCTGACAAACCTTTTATTTGTATCTTGTGCGAAAAGGATTTCACACTTAAATCATCGCTAAGCAGACACATTGTAGCATCTCACGGCGTCGATCCCAGTCCTATTATTGATAGTGAAAAATGCTTAAAAAGGCCTACTGTCTTGCAGGCTTTGAACAAACAAATAGAACGGGCAATAAACGATAACAACAGAGAAATTAATGAGTCCTCATCATCTCCTCAGGTTAATCCTGAAAATGAGTCTGAGCATGAAAGCAGTCCTGATAACATGATTGAAATTGAGACAGTTTTTGTCTGTGAGATTTGCACTCGCGATTTTAACGATCGTGCATCGTTGTGGCTACATATTAGAGCCACTCACAAGGAGTATGCAGCATTTGCATGCGGTGTGTGCTTGAAAATATGTGCTGATAATACGCAGCTACTCAATCATGTCAACATGTACCATGGGGGATCTAAGCTACAAGTTTCAGAACAAAGAAGATACAGTTGTACTATTTGCGGGCGGCAACATGATTCGAGAAAAAAGTTGATAACACATGTATCCATACACAACGTAGACCCTGGCTATGACCCAGCCAGTTTTGTTCAACTGAATAGCAATTACTACAATGAAAATTTCAACAGCAACGAAGCGAATGATCAGACTTTGGAGTTTGACGGTGAGGATGGTGAAAAAATGGATTGCTATATTTGTTACAAGTCTTTTCCCAGCGAAGATCACCTCATACGTCATCAACGAAATGCTCACAAGTCCGAACCACTGGCACCAATGGGAGAATCTACAGGCAATGGAAGCGGGACTGGTTCTGTGAGTGGTAATGGAAACCGAGCACAGTATCATTTATTTTTCGTATGCGAATTATGTGGTAGTTCTCACCCAAGCAAATGGGAACGCTGGCTTCATGTCAGTAGTATTCACAGCAATGAGCCTGCTATTAGATGTGAACGGGACACATGTGGAAAAATTTTCGCTACAAGATCACTGCGCAACGATCATATTCAACATCATTCTGCTCAAGGCGCTTCTCCGAACACTTGTGAAATATGTGGCAAACTTTGGGGTAGTCGAGTTGATTATTGGAAGCATGTGATGGGTGTTCATTCTGATACTGTGCCTTTAATTTGTGGAGTTTGTCTCAAGGTTTTCCCAGATGTTATTCAACTCAGCACTCATGTTAAAACCAAGCATTGGCCACTTACGAACGGGGACTTTAGTTGCGATATTTGCGGCAGGCCGTATTCTAACAAATCAAAAATGTCTAGACACAGAAAAATTCACGGACTAGATGTAGACAGCTACATAAATAACACTATCCATGAATCAATGAATGACTCGACAAGGATCGACCATAGCATTAATGACTCAGATTTAAATTGCGAGATGTGTGCTCATTTGAAATTTTCCGAATTAGAAGAACTCTGTAATCACAGACGAAATGTTCACGGCTTATTCCCTTGTGATTTATGCAACAAGTATTACGGGAGGACCTCACATCTGTGGAAACACGTTAATAGGGTCCATAAAGGACACGAGGATGTCACATGTCGGTATTGTTTGAAGACAAGTGCATCTAAGGAACATTTAGCTGCTCATATTGCTAAGATCCATAGGTATGAACCGGAGACCAAAAAGGAAATAAGAGAATCATTAAATTTCAAGTCTGCAAATCTGGACGACGAAACCCCCCATCATTGCGAAAAATGTAACAAAGGCTTTCACAAGCGATATTTATTACGTCGTCATATGAAGGGGTGTCAGAACTACAGGAAAGACCCGGGAGCATTGTTAACACGGTGCAGAGCATGCGAGAGAATATTTAAAGATCGTGCAAGTCTGCAAAAACACATAGAAAATCATCACAGCACTTACACTTGTCATTTATGTAAAGAAGATGTAACTTCGAAGTTAGGAATTATGACTCACAACAGAGTTCACCATATGAATCACCCTGATTTGACCTGTGATCACAATAATTGCAAGAAATTGTTTAGAACCAGAGAAGACTTGGAATCCCATAAAAAAGATCACAAGTATCACAATTCACCAAATGTTTGTGATTTTTGTGGAGACACTGTTGAAAATAAGCTGAAATTAAAAATGCACATACTCTCCCTACATCGGAATGAGATTGGTGTTTCATGCGGGGTTTGTTTGATTCCAATGAAGGATCCCAAAGAATTGAAAAGACACGTCGAAGAAGTCCATGATCACATTCTGTCAAAGCCAAACACTTGTCAAGTCTGTGGGAAGCAGTATGCTTCAAAGTGGAAGGCCTTTGATCACACAAAAAAATGCCATGGGAAAGTATTCAGAACTTGTAAACAGTGTCTTGCTGTTTTTACCAAAGATGAGGAGTTGAGAAATCATTACGCTAGCGTCCACAATGTTCCGAAAGATCAGCTGTCTGGTTTTGATTATCGATTGGAAACTCCGACCGGAAAACCAGAAGACTACGAGTCAGCGGATTTACATATTAAAGAAGAACCTGATGATCTGGACTTTGACATTGATCCATGCGACGAAGATTCTAATGAGAGAAAAAGAAAGAAGCCTTTGACAGACACGTTTGACTGCAATTTATGTCACGAGATATTTTTGAACAATGAAACTTTGTCTCAACATTATCATAACGTCCATAACATGAATCCAGCGAAAAGATTGAAGAAATCGAAGAAAGGAGGCTCCGGTGGTAAAAAAAAAATAAGAAACAGAGAAAACTTTGGATGTAAAAATTGTGGTAAACAGTTCTGTACCAAAACTTTGTTTTGGAATCATATCAATGTCTGTACGAGACGTAATAGTGTAAATAAAGATAGTAACAACACTTTACCCACTTCTATTCTAGAAGCACATTTGAAAAATAATAATCAAATAAAAAAAGAAGAGCCTGACCCTGTTTTGACTGAATCGAATTTAAATATACCAGATTTCAATCTCTTTGAAGATATAAACATGCAACTTTCAGGGCAGAAACCTGTGCCTGATTTAATGCCAATATCTTCGGCGAAAGGACATTCGAGTAGCAAATGCTCGCGCAAAGATTCTAGAAAAGTTTACGATGAATCTACAAACACAGAATGCGCCTGTGAAGTTTGCGGCAAGCAATGGCCAGCAAAGAAACATTTGTGGCAACATTTGATTCGTTTTCATAGAGCAGAAGCAGCTGTTACATGCGGTGTATGCTTGAAGCTATGTCAGACTTACGAGGACTTGGCAAATCACTTGAAAGCAACACACGAGGCAATTTTGACTGGCGAAGGAAATAACTTTACATGCAAAACTTGCGGGAGATATCACAATGCACGAAGTAAATTATTGTTGCATATGAGTATTCATATCAATTATAATGGCAGCGAGTGGTGTCAAAATTGTCATCAAGGTTTCGAAGACGAAGAGAAGTTAAAAGAGCATTTGGCAAATTGTACTGGGAAAGAGATTGAGTTTGATGATCAGAGTAACGACATTGATGCTCGAGTTAAAAATGAAAATGACAACGAAGATAAGGGGAGCTTAATTGACGACGATAATTCGATGATGGAGGAAGTTGAAGAGGTAGAATTTGAGTCCGAGGTAGAAGGTGATGCGACAGAAAATCACGATGATAGTAATAGTGATAATTCAGAAAGCGAAGCGAGCAACGAAAGCTTAAGCGACGAGGAAGAAAATGAGAATGAGAATGAAGTGGAAGAGGACGACATCGATGAAGATAATGAAGTTGATGACGAGTCTAGAACACACAGTAGAGCAACTGGAGATGTTAGCAGTGATTCTCAGAGTGAAGATGAAGACTCTGAGCATCATGACGAGGATTTGTCTGAACACAGTGAAAATGAGCAAAATGATAAGGAAACAAACAATGTAAGCTTTCTCAGCGGAACCGACGACACAAATGTCATGGAAAATGAAGACTGCGAGGATGACAAAGTTCAGGAGCAAGAAAATGCTGTAAATAGAATCGAAAGTCCAAGAAATCATATTAACCACGCAGGCGTAGATCAGGATTGTCAAGAACTTGCAGACCATTCACAATCCAGGAGTATCAACGATAAAGAATTTGAAGAAAGACCTTGCGAGCTACAAAATCAGGCTTTGTTCAAAGAAGAACCTGGCGATTATTCTGACGATGAGGGCCCACCTATTTTAAGCCCGATGGTACCATTGCCTGTGGTGAATGATACAGAGGAGCCGGACGTAGATCAGTTAGATAAAGTCCAGCATAAATTGAGTCCAATGATATTAGCTTCTTGCAGTACCGAGCGACCTGGAGTTAAGTGTGAGTTGGAGCAGATCAAGAATGAAATAGAAAAGGGAGAATCGTCATTCACAGCTTCTAACTTGATGGAAGTGGACGAAAGTACTAAAGCAAGTGAAGATCCGAATGTGGCTGCTAATACTTTGACAGAAATCCTGGAATCTGACTCAGATGATGAGCAAGAAGAGGAAAAGGAACTTCTAGATGATGATGCTGATGAAGCTTCGGCTTCAGAAGTTGAAGAGAAGGCTTCGGAAATTGGAGAGGCTTCCGAAAATGAGAATGCGACAGTAGAAGACGAAGAACAAGAAGAACAGGAAGAGGAAGAAGAAGATGAAGAAGAGGAAGACGAAGATGAAGATGAAAGAGAGGAAAGAGAAGAAGATCAGACAGAGAATGATCACGATGAAGATACTTTGGAAAATTGCGATGAAGAAAGGGAAGATAATTTTGAAGAAATACAAAATGCAGTTGACATAACAGAGGATATATTTGAGGGGAATTCAGATGGAGAGATAGAGGATATGGAAATAGGTGATAATACTAACACTGTACAAATACCGAATTTAGATGGAACTGTACTTATGGTTGCCAATGATGCCGATGGAAATCAGATATTGATACAGCGTAATGTTTCTGATTTACCCAACGATGATTCGAATCCCGAAGTGACGGAGTATATTTTAGAAGGTGAAAACGAGTATGAATTAGATAATTACGAGACGGCGTCTAACGATGAAAATGTAAGACGACAGTATGAGAATAGTCCTAATATTTCAGAGGATGAGAATAATGTTGAGGGAGCGGAAGACGCGCAAATATCGATTATTAGTGCCAAAAGTAAAGTGTCAAGGACGTAA
Protein Sequence
MESKERYAEMCRLCASYDAIKMDIFGQEGRNRQLVDKIQTCLPFKIAENDRLPKCVCYRCMYNLENFYDFRTACINAVALLERCLPPYHNDTGDGTQNNLQFSQLRSELLKEKENMPILIPEAPIVNPNGALGTPPRLNSDGEADHEIEEILYQGISDDGADDHDDPKSDEYEMDMETNPSDFLEMTSMVTEDAEDEDTATITPANNDSTLFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDIVGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPPDVPVPYIQQDNKFQCRTCPKMYTNVTDLNKHSRVCAGDRKKELTSKNSLLKRKGAVDTSDLSSIDSDDGGKDYRDAEAKLAKNPQLTILKQALTKRDNLKRDYEETKTNHKPKKISRTDSSETDGQKRWYCEICPQSFTSVDSLKEHELVHDADKPFICILCEKDFTLKSSLSRHIVASHGVDPSPIIDSEKCLKRPTVLQALNKQIERAINDNNREINESSSSPQVNPENESEHESSPDNMIEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICADNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENFNSNEANDQTLEFDGEDGEKMDCYICYKSFPSEDHLIRHQRNAHKSEPLAPMGESTGNGSGTGSVSGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSIHSNEPAIRCERDTCGKIFATRSLRNDHIQHHSAQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSTHVKTKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDVDSYINNTIHESMNDSTRIDHSINDSDLNCEMCAHLKFSELEELCNHRRNVHGLFPCDLCNKYYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASKEHLAAHIAKIHRYEPETKKEIRESLNFKSANLDDETPHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCKEDVTSKLGIMTHNRVHHMNHPDLTCDHNNCKKLFRTREDLESHKKDHKYHNSPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEEVHDHILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTKDEELRNHYASVHNVPKDQLSGFDYRLETPTGKPEDYESADLHIKEEPDDLDFDIDPCDEDSNERKRKKPLTDTFDCNLCHEIFLNNETLSQHYHNVHNMNPAKRLKKSKKGGSGGKKKIRNRENFGCKNCGKQFCTKTLFWNHINVCTRRNSVNKDSNNTLPTSILEAHLKNNNQIKKEEPDPVLTESNLNIPDFNLFEDINMQLSGQKPVPDLMPISSAKGHSSSKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCQTYEDLANHLKATHEAILTGEGNNFTCKTCGRYHNARSKLLLHMSIHINYNGSEWCQNCHQGFEDEEKLKEHLANCTGKEIEFDDQSNDIDARVKNENDNEDKGSLIDDDNSMMEEVEEVEFESEVEGDATENHDDSNSDNSESEASNESLSDEEENENENEVEEDDIDEDNEVDDESRTHSRATGDVSSDSQSEDEDSEHHDEDLSEHSENEQNDKETNNVSFLSGTDDTNVMENEDCEDDKVQEQENAVNRIESPRNHINHAGVDQDCQELADHSQSRSINDKEFEERPCELQNQALFKEEPGDYSDDEGPPILSPMVPLPVVNDTEEPDVDQLDKVQHKLSPMILASCSTERPGVKCELEQIKNEIEKGESSFTASNLMEVDESTKASEDPNVAANTLTEILESDSDDEQEEEKELLDDDADEASASEVEEKASEIGEASENENATVEDEEQEEQEEEEEDEEEEDEDEDEREEREEDQTENDHDEDTLENCDEEREDNFEEIQNAVDITEDIFEGNSDGEIEDMEIGDNTNTVQIPNLDGTVLMVANDADGNQILIQRNVSDLPNDDSNPEVTEYILEGENEYELDNYETASNDENVRRQYENSPNISEDENNVEGAEDAQISIISAKSKVSRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01411748;
90% Identity
iTF_01413611;
80% Identity
-