Tmes017127.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000200.1:2536844-2539781[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.4e-05 0.007 18.1 0.5 2 23 335 356 334 356 0.97 2 11 0.00031 0.064 15.1 0.7 1 23 364 387 364 387 0.94 3 11 0.00017 0.036 15.9 2.3 2 23 435 456 434 456 0.97 4 11 2.4e-07 5.1e-05 24.8 0.7 2 23 504 525 503 525 0.97 5 11 2.9e-05 0.006 18.3 1.5 1 23 530 553 530 553 0.95 6 11 6.2e-06 0.0013 20.4 0.2 1 23 590 612 590 612 0.98 7 11 8.6e-07 0.00018 23.1 0.9 1 23 622 644 622 644 0.96 8 11 2.4e-06 0.00051 21.7 1.2 1 23 650 672 650 672 0.99 9 11 1.2e-05 0.0026 19.5 0.2 1 23 678 700 678 700 0.98 10 11 0.0021 0.44 12.4 4.2 1 23 706 728 706 728 0.98 11 11 0.00048 0.099 14.5 0.3 1 21 734 754 734 755 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTGGAAAAGACAGAAGAAGGTGCTGAAAATATATCCCAACTTCAGTCAGCTTCTTATCATGAATGTCGTGTTTGTTTAAAGAATTCAAACGAGTTTTGGGAATTGTTTGAAAACGATTATGATATACCACGGAAAATAATGGCGTTTGCTTCTATACAGATAGAACACGGAGACGGCTTACCAAGTGTTATTTGTTTTCCTTGTCGTCAGCTACTGGACGTTTCTTACGATTTTAAATGTCAGGTAGAAAGGTCCGATGCCTCTTTACGTAAAATATTACTAACTAAAATCGAGGTGAACCAAGATGTTGGAAAAGAGTTATTATCCCAGTCGGTTAATGACGTTATTACAGAGGCTATCGCCGACGAGATATCCAGCGATCATATCGAGTTAAAGGATTTTGAGATGCCTAATGAAACTAAGATCCTTACTTTACAAGATATTAAAAACGTCGTATTGAACGATTACGATAATAAACAAGACGTAGTAAGTTATGAGATCAATGAGGTACGCCAGGTTGGCATTGAGTCGTTGCATGAAGAGGAAACAGATGAAAGAAACGGAGATGATGAAATAGATGATAAAAATATAGATAAAGATCATGATTCAGGCGAGCCAGAGATTATAACGAGTCTAGAGAATGAAGAGATACTGTTAGAGAATGAAGAAGTTACAGTTGAGAAATTGATTGACGCAACAGATCAGAGTATGGAATCTGAAGCTGAACCAATTAAGCAGGAAGAACTCCTGTTGCCAGAGGATAGCGATGTCTCCGAAGGAGAGGAAGAGGACGATCACCAGACTGATGAGATTATTTTCAACGGTGAAGATCTTAAGTTTGAATTGAAAAATAATTCATTATCAGAAAGGGAGGATGAAGTTGACGAAGCTTCTTCTGAATCTGGTAAACTAAAAACTATGAATTGCCAAATTTCTAGTGGAGAAATTAACGACAGTGATGAAGAAAAACCATTGATTTCAAGAACTAGTAGACAGAAATGTCCCCATTGTATAAAAAGTTTTGCGACTAATATTGCGCTGCAAAGACATATGGCTGTTCATAAACACAAGACCAAACTTAGATACGTTTGCTATTTGTGCGACAAACAATTTTCTAATGTTGCTAAGCTGAAAAATCATGTATCTAATAATCACGATTCATTGAAAAATGACAACAGAATTGATATCGATAATAATTGCGGTAGAGTTGAAACAGATAGGAAGATAGACAAGTTGGATAAAGATATCGGTGGATCTATGGACAAGCAAAAAGTTGATAAAAAGAATTATAAATTGAAATGCAAAGTGTGCGCAAAACAATTCACCTATCAGAAATCATTTCTTTCACACATTAAAACCCACCCTGAATACGATAGATCAGAGACAACAGATAATCATTCCGAACAATTAGAAACTATAGAAGAATCGCTGGAACATCAAAATGATTTGTCTAATTCTAAAATAAATGAATCTGATGACGATGATTTGCCACTTGAAGGTCTGCAATGCACCCAGTGTGGCAAACTCTTTGCAACAAAGGGGAATCTGAAACGACATATTTTAACACATAGCGGTCTTAGATTCAATTGCTCAACATGTGGTAAAGAGTTTTCGCGACTAGATAAACTCAAAGATCATGAACAGTCCAAACACAAAGAGGAAATATTTGGTCCGTCAAGCGATGAAGATGACGACACTGATAACGAAGGTAAACCAAGCGATGGGACGGAGTCCAGAAGAAAGGAAAAGAAATGCAGACCTCATCAGtgcgcaatgtgtccaaaggcttttgcccagcctcaatcattggctaatcacatggagcgacacaaacgtgtaaaagaacctcagaaacgttttctatgcgaagtgtgtagcaagtgttttgcccaaagtggatcgcttgtagcccatatgcgaactcatacaggagttaaaccatatgtttgtaacgtatgcagtagagcatttactaaaagtacatatttacagttacatctgcgtactcatagcggcgaaaaaccctacatatgccaatattgtagcagagcatttgccagagctaatacactggctagacatataactatgcatacaggagaagctaaatatcattgtcaaatatgcatgaaatctttcagacgattgacctctttgaacgaacatacttatacacatactggtcagaggccatacgcgtgtaaaatttgttctaaacgttacaataacgcaggctctttgtatgcacatacgaaaaAATGTAGGGCGCAACAATTGTCAGGATCTGCTCCAACTTATACAGTTTCGGTTGAAAATACAAATCATCACGACTCTGGACCGGTACCACAAATGTTGATTTATGGACCGAGAAAAATTGTCGCTAATGAACCGCAGACTACTCAAGGTCCGACCCCACAGTTTATGATCACAACTGTACAGAGTCAAAAATCTTTGCCAACTAATATTGGTCAAAGATTTGTTGGGGAGGATCCTCATTTTTATTCCATAGATGGAAAACAATTGAAAAATCCTTACTATACGATATATCCCAACATGTAA
- Protein Sequence
- MEVEKTEEGAENISQLQSASYHECRVCLKNSNEFWELFENDYDIPRKIMAFASIQIEHGDGLPSVICFPCRQLLDVSYDFKCQVERSDASLRKILLTKIEVNQDVGKELLSQSVNDVITEAIADEISSDHIELKDFEMPNETKILTLQDIKNVVLNDYDNKQDVVSYEINEVRQVGIESLHEEETDERNGDDEIDDKNIDKDHDSGEPEIITSLENEEILLENEEVTVEKLIDATDQSMESEAEPIKQEELLLPEDSDVSEGEEEDDHQTDEIIFNGEDLKFELKNNSLSEREDEVDEASSESGKLKTMNCQISSGEINDSDEEKPLISRTSRQKCPHCIKSFATNIALQRHMAVHKHKTKLRYVCYLCDKQFSNVAKLKNHVSNNHDSLKNDNRIDIDNNCGRVETDRKIDKLDKDIGGSMDKQKVDKKNYKLKCKVCAKQFTYQKSFLSHIKTHPEYDRSETTDNHSEQLETIEESLEHQNDLSNSKINESDDDDLPLEGLQCTQCGKLFATKGNLKRHILTHSGLRFNCSTCGKEFSRLDKLKDHEQSKHKEEIFGPSSDEDDDTDNEGKPSDGTESRRKEKKCRPHQCAMCPKAFAQPQSLANHMERHKRVKEPQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHTKKCRAQQLSGSAPTYTVSVENTNHHDSGPVPQMLIYGPRKIVANEPQTTQGPTPQFMITTVQSQKSLPTNIGQRFVGEDPHFYSIDGKQLKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01412546; iTF_01411746; iTF_00939804; iTF_00938941; iTF_01200373; iTF_01414397; iTF_00060544;
- 90% Identity
- iTF_01411746; iTF_00938941; iTF_01412546; iTF_00939804; iTF_01414397;
- 80% Identity
- -