Tsin077973.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060972.1:94718679-94719401[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0027 61 6.1 0.1 16 44 93 122 79 126 0.79 2 4 0.00033 7.7 9.0 0.0 21 47 127 153 122 158 0.86 3 4 0.00037 8.4 8.9 0.1 21 45 155 179 150 184 0.87 4 4 0.00059 14 8.2 0.1 21 45 184 208 178 215 0.87
Sequence Information
- Coding Sequence
- ATGTGGGGAGAACTCCAGCAGGGAGGTCCAGGTCGAGTTCCAACAAGGGCACCAATATGGGGTGAAGCAGCCACACAGCATGTTCGTGAGCTGTGGCAGGAGTTCTTGCTGCCACTTAGCCATGCCCCTCCACCACCTAGTGCTACACCTGTCACTACTGTTGCACCCACCACCTCTCCTAGCAGCCCTACAGATTTGGATGAGCAACAGTCTTGCGTCATGTGCCTCAAGGGTACACCTCCCCCTACCAACAGTACAACCTCCCCTTCCAGTACTACTTCTCGCTCGCATGCAGGAGATCGCCCATTTAGTTGTGACGTCTGTGGCAAAGGCTTCACTCAGGCAGCACATCTGACGAGGCACACCAGAGTGCACACAGGGGAGAAGCCATTttcatgtggtgtgtgtggtaaaTGTTTCTCACAGTCTGGGGATTTGACTCGTCATGCTCGTGTACACACCGGTGAGAAGCCATACTCATGTTCCGTGTGCCTGAAACGATTCTCACAGTCTGGTGACCTAAGCCGACACACTCGACGGGCCCATCCTGGGGAGAATCCCTTTTCTTGTGCTGTGTGCCTCAAGAGTTTCTCACAGTCAGGAGGTCTGACACGACATACACGGGTTCATGCAACTACTCCTTCACCTACTCAGTCCTCAGGGACGTCACCACAGACTGAACAAGCAAGACAATTCTTCCCTGACGTAATGTCACCACCCTGA
- Protein Sequence
- MWGELQQGGPGRVPTRAPIWGEAATQHVRELWQEFLLPLSHAPPPPSATPVTTVAPTTSPSSPTDLDEQQSCVMCLKGTPPPTNSTTSPSSTTSRSHAGDRPFSCDVCGKGFTQAAHLTRHTRVHTGEKPFSCGVCGKCFSQSGDLTRHARVHTGEKPYSCSVCLKRFSQSGDLSRHTRRAHPGENPFSCAVCLKSFSQSGGLTRHTRVHATTPSPTQSSGTSPQTEQARQFFPDVMSPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821450;
- 90% Identity
- iTF_00955840;
- 80% Identity
- iTF_01411000;