Basic Information

Insect: Temnothorax unifasciatus
Gene Symbol: chn
Assembly: GCA_030770225.1
Location: JASTWK010002493.1:789260-793503[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.9e-06 0.00061 21.3 3.1 1 23 356 378 356 378 0.98

2 16 9.6e-07 0.00015 23.2 1.2 1 23 384 407 384 407 0.95

3 16 9.2e-05 0.015 17.0 1.3 1 23 413 435 413 435 0.99

4 16 2.5e-05 0.0039 18.8 0.9 1 23 441 463 441 463 0.97

5 16 0.00086 0.14 13.9 2.5 1 23 469 491 469 491 0.96

6 16 0.00024 0.038 15.6 0.3 3 23 499 519 498 519 0.98

7 16 1.3e-05 0.0021 19.7 1.2 1 23 525 548 525 548 0.97

8 16 0.00015 0.024 16.3 7.2 1 21 647 667 647 671 0.93

9 16 0.71 1.1e+02 4.7 0.1 1 23 733 756 733 756 0.92

10 16 0.00017 0.027 16.1 1.7 1 23 786 808 786 808 0.98

11 16 1.8e-05 0.0029 19.2 1.9 1 23 814 837 814 837 0.96

12 16 2.5e-05 0.004 18.7 0.2 2 23 844 865 843 865 0.97

13 16 1.9e-07 3e-05 25.4 1.1 1 23 871 893 871 893 0.99

14 16 2.1e-05 0.0033 19.0 1.0 1 23 899 921 899 921 0.98

15 16 2.7e-05 0.0042 18.7 1.6 1 23 927 949 927 949 0.96

16 16 0.00028 0.044 15.5 1.9 2 23 956 978 955 978 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.9e-06	0.00061	21.3	3.1	1	23	356	378	356	378	0.98
2	16	9.6e-07	0.00015	23.2	1.2	1	23	384	407	384	407	0.95
3	16	9.2e-05	0.015	17.0	1.3	1	23	413	435	413	435	0.99
4	16	2.5e-05	0.0039	18.8	0.9	1	23	441	463	441	463	0.97
5	16	0.00086	0.14	13.9	2.5	1	23	469	491	469	491	0.96
6	16	0.00024	0.038	15.6	0.3	3	23	499	519	498	519	0.98
7	16	1.3e-05	0.0021	19.7	1.2	1	23	525	548	525	548	0.97
8	16	0.00015	0.024	16.3	7.2	1	21	647	667	647	671	0.93
9	16	0.71	1.1e+02	4.7	0.1	1	23	733	756	733	756	0.92
10	16	0.00017	0.027	16.1	1.7	1	23	786	808	786	808	0.98
11	16	1.8e-05	0.0029	19.2	1.9	1	23	814	837	814	837	0.96
12	16	2.5e-05	0.004	18.7	0.2	2	23	844	865	843	865	0.97
13	16	1.9e-07	3e-05	25.4	1.1	1	23	871	893	871	893	0.99
14	16	2.1e-05	0.0033	19.0	1.0	1	23	899	921	899	921	0.98
15	16	2.7e-05	0.0042	18.7	1.6	1	23	927	949	927	949	0.96
16	16	0.00028	0.044	15.5	1.9	2	23	956	978	955	978	0.94

Sequence Information

Coding Sequence: ATGGAGACTAGGGACTCGATGCCGCCAGAAATGGAGTCACCCGGCGAGGACATTATGCTGATCGAGACCGTGAAGAGTATAGTGACGCGTGGAGAGCGCAACGAGTCGGAGGGAACCGACGAGGATTTCTTCTTGATGTCGCAGGACCAGTCGGTGCAGTATCCCGAGGGAACGGTATCTGCAACAGAGGTGACGTTAACGTGGATGCACCTCTGCAGGATATGCGCTAACGCGAGCGATCACATGATACCCATCTTCGAGGGCGACGGAGCGGAGCATGACTTGTCCAGCAAAATAATCAAGTACTTGCCGATACACGTATCCGAAAGCGACACTCTGCCGTTGCAACTGTGCGAGAATTGCGCCAATATCCTGATAGCCTGGCACCAGTTGCGCGAGGGATGTCTAAGCGCGGAGATAAAGCTGCTGCAAATGCAGGCTACGCAACTGCGAAATAAGCAGCAGTATTACAACCCTACTTCTTTGGATAATTTGGAAGTTACTACGCCGATGCTTACGACAGCCAGCACGACCATTGAGTCTAATGTTACAAACCCACTGCCAAATCAACAGGACGATGACAAAAACGAAGCGTGTGAttcagaaaaaattaataaatctaacAGGTCGTGCGGCGTCCGGACACCGTTTAGAGTGTCCCCGGACACGCCGAAAGCATTTTGGAAGCCATACAGGAAACGATGCCAGTCGAGAAAGCGCAACCTGACAAAGCCGAGCGCGACGGCCGAGGACTCCGACTCGGTCTGGATCGCCGTCATGGACACGATGCACGATCAACCGTCTACCGTGTCTGAGCAGCTGGAGAGTAACGATCAGTCAGTCGAACCGAAGGAAGAGTATGTCGCGACGCAGCGCTCTGTAAAAAATTCCGACTGCGACGAGGATAGCGACGAGCTTCGGACGATCACTGTCGCACGCGAGGAGAAGAAAAGCGAGAGAGATCAGACCTTGAATGAGGATTCGACACATTTGGTACTTGACGATGAAAAGGACAGTAAAGAACTGTGCGAGATTCTTGGAAACGCGTCGCACAGAGAGGAAACGTTCCGATGCGCCGAGTGCGGTAGATGTTTCAAGCTAAAGGACTCGTATTTGCGACACATGAGGATCCACAAGGACGAGCGGCCGTTCACCTGCCACGTGTGCGGCAAACAGTTCCGCGACTCCGGCGGGCTGACCAGGCATCTCAAGGACGTGCACGCGAAGCTGAAGAACTTCACGTGCGACTTGTGCAACAGATCTTTCGCGTCCAAGGCGACGCGGGAGGATCACCGGCGCACCCACACCGGCGAACGGCCGTACGTCTGCGACTCGTGCGGGAAAACTTTCAAGTCCAAGGCGTCCCTGTATATCCACAGCAAGCTGCACACCGACGTGTTTCCGCACGCGTGCTCGTACTGCACCAAGCGGTTTCGCCGGCGACAGGAGGTGCTGGCACACGTGACCACGCACACCGGCGAGAAGAATCACGGGTGCGACGTGTGCGAGAGGAAGTTTCGGGTCAAGTCTGAACTGGCGCGGCACAAGCTCATCCATTCTGAGAACAAGCCGTACGTCTGCGTCAAGTGCGGTCTCGCTTTCCGGCAGAAGCGCTACCTGAACAATCATCTCAAGAGCCGGCACAAGGAATCTCTGCGAGCGTGCGAGCTGACAGAGGAGAGATCTATCGTGACATACCGCTCCTCGTGTAGCGCTGCACTGTGGACGAATAACGCCACGATAAAGTACGAAAGCATTCCAACGAGAAGCACGACGCTGATTGCAGAAAAcgttaaagaaattttagaaagaaagaCACGTTCGTCGGATAACTGCAACGCAGTAAAATACGACGAAAAAATAGACTCGAACGCCTCAAgatatcaagaaaaaaataaactaacaGTTCTACAGTCAACGAGTAACTCTGTAAAGAACTATACTTGCGATAACTGCCGACGTGTTTTCAAAAGAAAGCACCATCTAATACGCCATATGACAGGCTGTAAACATCACGATTCAGCCAACGAAGAAGATTTGTCAAGAACACGCACTAAGGtaacagaaaagaaaaagaagacagATGACAGtatgagaaaagaaaagaaccgGTTGATGGAAAATATTAAGAGCGCAAGCGACAACAAAAAACCTTACCTTTCATCAGTAAAATTATTGGGAAAACGATCCAGAATTTATCCATGCGGATATTGTGAGCACATTGCGGAGAAGAGGATACTGTTAAAAGCCCATCTGGCGGAGGCACATCCCGAGGTCGCGAAGAAGAATCGAAAGTCCTTCGTAGCCACGGAGACAGTGATGCGTGCCCGAATGGAACATGACGGTAAAGTGTACTACCATTGCAACGAGTGCGGCAAGAATTTAAATTCGCCGTACACCTTCTACTGGCACCTGCGCATCCACACGGGCGAACGGTTGTTTACCTGCCACCTCTGTGGCAAGCGATTCCGCGTGAATCAAGGTTTGGCACGGCACCTGAAGGAGACCCACGCCGGCATCAAGAACGTGCCGTGCGATCTGTGCGGCCGTATGTTCTCGACGCGGCGCAACGTCGAGGACCACAGGCGCATCCACACGGGCGAGCGGCCGTACGTCTGCAACGTCTGCGGCAAAACGTTCAAGCAAAAGGCCTCTCTCTTCGTGCACAATCGCACGCACACGGACGTGTTCCCGTTCAAGTGCAGCTACTGCGGCCAGACCTTCCGCACGCGGCCGCCGCTGATGTTGCACATCACCAAGCATACCGGCGAGAAGCCGCACGCGTGTGACGTGTGCGGCCGTCGCTTTCGTATCAAATACGAGCTGAAGCGACACCGACTGATCCATTCCGACGAGAAACCCTGGCGCTGCACCGACTGCAGCCTCTCGTTCCGCCAGAAGCGCTACTTAATTAATCATAAGAAACTCAACCACGAGCCGCCACGCAATTCGGCCGTCCCCCAAGTAACGGGCTGA
Protein Sequence: METRDSMPPEMESPGEDIMLIETVKSIVTRGERNESEGTDEDFFLMSQDQSVQYPEGTVSATEVTLTWMHLCRICANASDHMIPIFEGDGAEHDLSSKIIKYLPIHVSESDTLPLQLCENCANILIAWHQLREGCLSAEIKLLQMQATQLRNKQQYYNPTSLDNLEVTTPMLTTASTTIESNVTNPLPNQQDDDKNEACDSEKINKSNRSCGVRTPFRVSPDTPKAFWKPYRKRCQSRKRNLTKPSATAEDSDSVWIAVMDTMHDQPSTVSEQLESNDQSVEPKEEYVATQRSVKNSDCDEDSDELRTITVAREEKKSERDQTLNEDSTHLVLDDEKDSKELCEILGNASHREETFRCAECGRCFKLKDSYLRHMRIHKDERPFTCHVCGKQFRDSGGLTRHLKDVHAKLKNFTCDLCNRSFASKATREDHRRTHTGERPYVCDSCGKTFKSKASLYIHSKLHTDVFPHACSYCTKRFRRRQEVLAHVTTHTGEKNHGCDVCERKFRVKSELARHKLIHSENKPYVCVKCGLAFRQKRYLNNHLKSRHKESLRACELTEERSIVTYRSSCSAALWTNNATIKYESIPTRSTTLIAENVKEILERKTRSSDNCNAVKYDEKIDSNASRYQEKNKLTVLQSTSNSVKNYTCDNCRRVFKRKHHLIRHMTGCKHHDSANEEDLSRTRTKVTEKKKKTDDSMRKEKNRLMENIKSASDNKKPYLSSVKLLGKRSRIYPCGYCEHIAEKRILLKAHLAEAHPEVAKKNRKSFVATETVMRARMEHDGKVYYHCNECGKNLNSPYTFYWHLRIHTGERLFTCHLCGKRFRVNQGLARHLKETHAGIKNVPCDLCGRMFSTRRNVEDHRRIHTGERPYVCNVCGKTFKQKASLFVHNRTHTDVFPFKCSYCGQTFRTRPPLMLHITKHTGEKPHACDVCGRRFRIKYELKRHRLIHSDEKPWRCTDCSLSFRQKRYLINHKKLNHEPPRNSAVPQVTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765825; iTF_00885320;
90% Identity: -
80% Identity: -