Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000021.1:745399-749690[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.9e-06 0.0007 21.3 3.1 1 23 358 380 358 380 0.98

2 16 5.4e-07 9.6e-05 24.0 1.0 1 23 386 409 386 409 0.96

3 16 1e-05 0.0018 20.0 0.9 1 23 415 437 415 437 0.99

4 16 3e-05 0.0053 18.5 0.9 1 23 443 465 443 465 0.96

5 16 6e-05 0.011 17.6 2.5 1 23 471 493 471 493 0.96

6 16 2.7e-05 0.0049 18.7 0.3 3 23 501 521 499 521 0.97

7 16 1.1e-05 0.0019 19.9 0.9 1 23 527 550 527 550 0.96

8 16 0.00014 0.026 16.4 7.1 1 21 651 671 651 675 0.93

9 16 0.11 19 7.3 0.2 1 23 730 753 730 753 0.92

10 16 0.00017 0.031 16.1 1.7 1 23 783 805 783 805 0.98

11 16 1.9e-05 0.0033 19.2 1.9 1 23 811 834 811 834 0.96

12 16 2.6e-05 0.0045 18.7 0.2 2 23 841 862 840 862 0.97

13 16 1.9e-07 3.4e-05 25.4 1.1 1 23 868 890 868 890 0.99

14 16 4.5e-05 0.008 18.0 2.2 1 23 896 918 896 918 0.98

15 16 2.7e-05 0.0048 18.7 1.6 1 23 924 946 924 946 0.96

16 16 0.00048 0.085 14.7 1.9 2 23 953 975 952 975 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.9e-06	0.0007	21.3	3.1	1	23	358	380	358	380	0.98
2	16	5.4e-07	9.6e-05	24.0	1.0	1	23	386	409	386	409	0.96
3	16	1e-05	0.0018	20.0	0.9	1	23	415	437	415	437	0.99
4	16	3e-05	0.0053	18.5	0.9	1	23	443	465	443	465	0.96
5	16	6e-05	0.011	17.6	2.5	1	23	471	493	471	493	0.96
6	16	2.7e-05	0.0049	18.7	0.3	3	23	501	521	499	521	0.97
7	16	1.1e-05	0.0019	19.9	0.9	1	23	527	550	527	550	0.96
8	16	0.00014	0.026	16.4	7.1	1	21	651	671	651	675	0.93
9	16	0.11	19	7.3	0.2	1	23	730	753	730	753	0.92
10	16	0.00017	0.031	16.1	1.7	1	23	783	805	783	805	0.98
11	16	1.9e-05	0.0033	19.2	1.9	1	23	811	834	811	834	0.96
12	16	2.6e-05	0.0045	18.7	0.2	2	23	841	862	840	862	0.97
13	16	1.9e-07	3.4e-05	25.4	1.1	1	23	868	890	868	890	0.99
14	16	4.5e-05	0.008	18.0	2.2	1	23	896	918	896	918	0.98
15	16	2.7e-05	0.0048	18.7	1.6	1	23	924	946	924	946	0.96
16	16	0.00048	0.085	14.7	1.9	2	23	953	975	952	975	0.94

Sequence Information

Coding Sequence: ATGGACTCGATGCCGCCGGAAATGGAGCCATCCGACGAGGACATTATGCTGATCGAAACCGTGAAGGGTATAGTGACGCATGAAGAGCGCAACGAGTCGGAGGGAACCGACGAGGATTTCTTTCTCATATCCCAGGACCAGCCAGTGCAGTATCCCGAGGAGAACGTCGTGGAAACGGTGTCCAGGACGGAGGTGACATTAGCATGGATGCACCTCTGCAGGATATGCGCTAACGCGAACGATCGCATGGTACCCATCTTCGAGGGCGACGGAGCGGAGCATGACTTGTCCAGCAAAATACTCAAGTACCTGCCGATACACGTATCCGAAAGCGACACTCTACCGTTGCAACTGTGCGAGAATTGCGCAAACATCCTATTAACCTGGCACGAGTTGAGCGAGGGATGCTTAAGGGCGGAGAGAAAGCTGCTGGAAATGCAGGATACGGAGCTGCGAAATAAGCAACAGTATTACAACCCTACTCCTTTGGATAATTTAGAAGTTACTACGCCGATGCTTACGACAGCCAGCACGACCATTGCGTCCAATATTACAAACTCACTGCCAAATCATCAGGATAATAACAAAGATGAAACGCGTGATACAGACAAAATTAATAAGTCCAACAGGTCGTGCGGCGTCCGGACACCGTTTAGAGTGTCCCCGGACACGCAGAAAACATTTTGGAAGCCATACAGGAAACGGTGCCAGTCGAGAATGTGCAACCTGACAAAGCCGAGCGCGACGTCCGAGGACTCCGACTCGGTCTGGATCGCCGTCATGGACACGGAGCACGATCAACCGTCTACCGTGTCCGAGCAGCTGGAGAGTAACGATCCGTTGTCCGTCGAAGTGAAGGAAGAATATGTCGCGACGCAGCGCTCTATAAAAAATTCCGACCGCGACGAGGACAGCAGCGAGCTTCGGACGATCACTGTCGCACATGAGAAGAAGAAAAGCGAGAGAGATCAGATCTCTAATGACGATTCGATACATTTGGTACTTGACGACGAAAAGGACAGTAAAGAACTGTGCGAGATTCTTGAAAACGTTTCGCACAGAGAGGAGACGTTCCGGTGCGCCGAGTGCGGTAGGTGTTTCAAGCTGAAGGACTCGTATTTGCGACACATGAGGATTCATAAGGACGAGCGACCGTTTACCTGCCACGTGTGCGGCAAACAGTTCCGCGACTCCGGCGGACTGACCAGGCATATCAAGGACGTGCACGCGAAGCTGAAGAACTTCACGTGCGACTTGTGCGGCAAATCGTTCGCGTCCAAGGCGACGCGGGAGGATCACCGGCGCACCCACACCGGCGAACGACCGTACGTCTGCGATTCATGCGGGAAAACCTTCAAATCCAAGGCGTCCTTGTACATCCACAACAAGCTGCACACCAACGTGTTCCCGCACGCGTGCTCGTACTGTAACAAACAGTTTCGCCGACGGCAGGAGCTGCTGGCACACGTAACCACGCACACCGGCGAGAAGAATTACGGGTGCGACGTGTGCGGCAGGAAGTTCCGGGTCAAGTCTGAACTTGCGCGGCACAAGCTCATCCACTCTGAGAACAAGCCGTTCGCCTGCGGCAAGTGCGGTCTCGCTTTCCGGCAAAAGCGCTACCTGAACAATCATATCAAGAGCCGGCACAAGGAATCTCTGCGAGCGTGCGAGCTGGCAGAGGAGAGATCTCTCGCGACATACCGCTCCTCGTGTAGCGCTACACTGTGGACGAATAACGCCACGATAAAGTATGAAAGCAATCCGGCGAGAAGCATGACGTTGATTGCAGAGAACGCTAAAGGAATTTCAAAAAAAGAGACACGCGATTCGTCGAATAACTGTACTAACGCAGTAAAATACGACGAAAAAATAGACTCGAACGCCTCAAGAcatcaagaaaaaaataaatcggCAATTCCACAGTCAACGAATAAATCTGAAAAGAACTACACTTGCGATAACTGCCGACGTGTTTTCAAAAGAAAGCACCATCTAATACGCCATATGACAGCCTGCAAACATCACGATTCAGTCGACGAAGAGGATTTGTCAAGAACGCGCACTAAAGtgacagaaaagaaaaagaagacaaCACATGACAATATGATAGAAGAAAAAGACCGGCTGGTGGACGCAAGCGACGACGAAGAACATTGCCTTTCATTGGGAAAACGATCCAGAATTTATCCGTGCGGCTATTGCGAGCACACTGCGGAGAAGAGGAAGCTGTTGAAAGCCCATGTGGCGGAGGCGCATCCCGAGGTCGCGAAGAGGAATCGGAAGTCCTTCGTAGCCACGGAGACAGTGCTGCGTGCCCGAATGGAGCATGACGGTAAAGTGTACTACCATTGTAATGAGTGCGGCAAGAACTTAAATTCGCCGTACACCTTCTACTGGCACCTGCGTATCCACACGGGCGAGCGGTTATTTACCTGCCACCTCTGCGGCAAGCGATTTCGCGTGAATCAGGGTCTGGCGCGACACCTTAAGGAGACCCACGCCGGTATCAAGAACGTGCCATGCGATCTGTGCGGCCGCATGTTCTCGACGCGACGCAACGTCGAGGACCACAGGCGCATCCACACGGGCGAGCGGCCATACGTCTGCAACGTCTGCGGGAAAACGTTCAAGCAAAAGGCCTCTCTGTTCGTGCACAATCGCACGCACACGGACGTGTTCCCGTTCAAGTGCAGCCATTGCGGCCAGACCTTCCGCACGCGACCGCCGCTGATGTTGCACATTACCAAGCACACCGGCGAGAAGCCGCACGCGTGCGACGTGTGCGGCCGTCGCTTCCGCATCAAGTACGAGCTGAAGCGGCACCGACTGATCCATTCCGACGAGAAACCCTGGCGCTGCACCGACTGCAGCCTCTCGTTCCGCCAGAAGCGCTACTTAGTTAATCATAAGAAACTCAATCACGAGCCGCCACGCAGCTCGGCCGTCCCCCAAGTAACGGGCTGA
Protein Sequence: MDSMPPEMEPSDEDIMLIETVKGIVTHEERNESEGTDEDFFLISQDQPVQYPEENVVETVSRTEVTLAWMHLCRICANANDRMVPIFEGDGAEHDLSSKILKYLPIHVSESDTLPLQLCENCANILLTWHELSEGCLRAERKLLEMQDTELRNKQQYYNPTPLDNLEVTTPMLTTASTTIASNITNSLPNHQDNNKDETRDTDKINKSNRSCGVRTPFRVSPDTQKTFWKPYRKRCQSRMCNLTKPSATSEDSDSVWIAVMDTEHDQPSTVSEQLESNDPLSVEVKEEYVATQRSIKNSDRDEDSSELRTITVAHEKKKSERDQISNDDSIHLVLDDEKDSKELCEILENVSHREETFRCAECGRCFKLKDSYLRHMRIHKDERPFTCHVCGKQFRDSGGLTRHIKDVHAKLKNFTCDLCGKSFASKATREDHRRTHTGERPYVCDSCGKTFKSKASLYIHNKLHTNVFPHACSYCNKQFRRRQELLAHVTTHTGEKNYGCDVCGRKFRVKSELARHKLIHSENKPFACGKCGLAFRQKRYLNNHIKSRHKESLRACELAEERSLATYRSSCSATLWTNNATIKYESNPARSMTLIAENAKGISKKETRDSSNNCTNAVKYDEKIDSNASRHQEKNKSAIPQSTNKSEKNYTCDNCRRVFKRKHHLIRHMTACKHHDSVDEEDLSRTRTKVTEKKKKTTHDNMIEEKDRLVDASDDEEHCLSLGKRSRIYPCGYCEHTAEKRKLLKAHVAEAHPEVAKRNRKSFVATETVLRARMEHDGKVYYHCNECGKNLNSPYTFYWHLRIHTGERLFTCHLCGKRFRVNQGLARHLKETHAGIKNVPCDLCGRMFSTRRNVEDHRRIHTGERPYVCNVCGKTFKQKASLFVHNRTHTDVFPFKCSHCGQTFRTRPPLMLHITKHTGEKPHACDVCGRRFRIKYELKRHRLIHSDEKPWRCTDCSLSFRQKRYLVNHKKLNHEPPRSSAVPQVTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01409378;
90% Identity: iTF_00765825;
80% Identity: -