Basic Information

Insect: Temnothorax rugatulus
Gene Symbol: -
Assembly: GCA_035220575.1
Location: JASTWL010000404.1:2569578-2577242[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00012 0.019 16.7 0.2 2 23 733 754 732 754 0.97

2 17 0.94 1.6e+02 4.4 2.8 1 19 760 778 760 779 0.91

3 17 1.1 1.9e+02 4.2 0.5 2 23 787 808 786 808 0.95

4 17 8.9e-05 0.015 17.1 1.4 3 23 817 838 816 838 0.98

5 17 0.0033 0.55 12.1 2.0 1 23 845 868 845 868 0.95

6 17 0.00012 0.019 16.7 0.7 1 23 874 897 874 897 0.94

7 17 5.6 9.3e+02 2.0 1.5 3 23 906 925 905 925 0.86

8 17 1.7e-07 2.9e-05 25.6 2.1 2 23 931 952 930 952 0.97

9 17 2.8e-06 0.00046 21.8 0.2 1 23 958 980 958 980 0.99

10 17 0.00069 0.11 14.3 2.4 2 23 992 1014 991 1014 0.95

11 17 0.0097 1.6 10.7 2.5 1 23 1020 1043 1020 1043 0.96

12 17 0.035 5.9 8.9 2.8 2 23 1064 1086 1063 1086 0.94

13 17 0.21 35 6.5 0.3 2 23 1093 1115 1092 1115 0.95

14 17 7.1e-05 0.012 17.4 1.0 3 23 1124 1144 1122 1144 0.96

15 17 0.0027 0.44 12.4 2.3 1 23 1150 1173 1150 1173 0.96

16 17 0.47 79 5.4 4.3 2 23 1180 1201 1179 1201 0.96

17 17 0.012 2 10.4 2.6 1 23 1207 1229 1207 1229 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00012	0.019	16.7	0.2	2	23	733	754	732	754	0.97
2	17	0.94	1.6e+02	4.4	2.8	1	19	760	778	760	779	0.91
3	17	1.1	1.9e+02	4.2	0.5	2	23	787	808	786	808	0.95
4	17	8.9e-05	0.015	17.1	1.4	3	23	817	838	816	838	0.98
5	17	0.0033	0.55	12.1	2.0	1	23	845	868	845	868	0.95
6	17	0.00012	0.019	16.7	0.7	1	23	874	897	874	897	0.94
7	17	5.6	9.3e+02	2.0	1.5	3	23	906	925	905	925	0.86
8	17	1.7e-07	2.9e-05	25.6	2.1	2	23	931	952	930	952	0.97
9	17	2.8e-06	0.00046	21.8	0.2	1	23	958	980	958	980	0.99
10	17	0.00069	0.11	14.3	2.4	2	23	992	1014	991	1014	0.95
11	17	0.0097	1.6	10.7	2.5	1	23	1020	1043	1020	1043	0.96
12	17	0.035	5.9	8.9	2.8	2	23	1064	1086	1063	1086	0.94
13	17	0.21	35	6.5	0.3	2	23	1093	1115	1092	1115	0.95
14	17	7.1e-05	0.012	17.4	1.0	3	23	1124	1144	1122	1144	0.96
15	17	0.0027	0.44	12.4	2.3	1	23	1150	1173	1150	1173	0.96
16	17	0.47	79	5.4	4.3	2	23	1180	1201	1179	1201	0.96
17	17	0.012	2	10.4	2.6	1	23	1207	1229	1207	1229	0.98

Sequence Information

Coding Sequence: ATGCCGAATCCCGAAATCAATAAACGCGATCACAATTACAGTGAATCGAAACCTCAACATCCCAACAATGGTAATGGTGGCGCTATCTGCAAGATGTCCAAGATAGGATCTATCGTGGGTCAGATTAGAGACATCAACGAACTGAAGAAGATTGCACCGCGCGTTCGTCTACAGGACACTGAAAGCTTGAACGAGTTGACGAGGATCTCTTCTTTAAGTAACAGTAAATTACAGCAGAACGATACATCCGTTCTCGAGAGAACACGACAAGAACTGAGAAAATACTGCCGCACCTGCGCTGGCCTAAAACTGCCCTTGGTGGACATCTTTAGTGAAAAGGGCATTAAATTGCGATTGAGTCAGCAAATCAAGCATCTCGAAGTGAATCCTTATGATAGTCTCTCTACACAGATGTGCATGGACTGTATCTGCGATCTTAGAATgagttataaatttttcatgCAGATAAAAAAAGCTGAGATAAAATTGAAATCTATCCATGTCAATCTCACGACTGATAATGCCACTAAGAAAGTTACGTTGATCGACGAGTCTTTGACAACAAAAGAGGAGAAGCTATCGTCTTGTATAGAAACAAAGCAGGAATATCAATTGTCCTCTACAATCCAACAAAACCTATCTTCATTGTCATCGAAGCAAGATGACCTGACAACTCCCGGAAATCAAGCAGGTGACTCTGGTCCGAAAATTTGTGCCATCTTTTCGTTGAAGGACGAATCGAAGGTAAAATCtggaaaggagaaggaagacaatgacgaggaggaggaggaagagctACAGATAGGCGGAGGAATATTTGAGGAAGTGGCAGAGGGAGAGGATGAAGAATCTATCGAGGAATTTGATCCTGAAGACCCTGCACTCCTggaagatgaagaagaagaaaaaaaatctcCAAGATCCCCAACAACCGTCTATAAGTACGATATGGCAGCAAAGTCTTATGTGAGGTTGGAAAGAAGTGAAGAGGGAGTTTCTGTGAAATCTTCCCAGACTTCAGAAGGTGACGGAGAAAATCAAAGAGAGGGAATGAGTAAGCCAAATATCTTGAAGAGGAAATTAACAATGCCAACGGTAACGACGAAGAATGGAGGGGGGGAGGACGAGGTACAAAGTATAGTCGAGGAGCGCAAAGTGCAAAAGTTAGACACAAACAGTCTCTCGAATGTGAATAGTCCTCTAGAAGAGGATGGAATTATGTACGTAACTGTAAAGGGCTCCAAACCGAACGAATTTCTTCTGGTGAAGGTTAAGAAAGTGGACAAACCCATGGAATCAAAGCGCGCGGTAATCTCCACTGATCTTAAGCCTGTCGAGCGTCTCCTCAAACGTTATGAAACGTTGACATCGAAAGATTTCTCATCTCGACGTCCTGACGGCCGCGAGCAAATAATTGAAGAACAAATCgaagaatataaaaagaaacgagaaaAGGTTCTTGGCGGTCAGTCGGTAGTAACGTTCACCGTGAATGAAACGCAAAAAGAAGTACAGGAGCAAGAAATTTCCTCCAAGTCAAATTTTGAAAAGGTAGAAGATGAGACACTTTTGAAACAAGTGGCTGGAGTGAAGGAGGAGCGGGAGCAAGAGcaagaggaggaggagcaggagcAGGAGCAGGAGGAGCAacagcaggaggaggaggaggacgaggaggaggacgaggaggaggaggaggaggaggaggaggaggaggagaaagaggaggggaATGGGGATGGGGATGGAGATGGGGATGAGGATGGGGATGGAGATGGAgataaagaagagaaagagtTTTGGAATAAGATAGAAAAGGGTGAAAATATTGACGAAAGTCAAGAAAAGGTCCATGATAATACAGAGGAATATCTTTCAAAGTTATCAAGATTGAAACTAAAGTGGGAAGAGACGAAGCGGAAAAAGGAAAGTTTGCAGAAGGAACTGGACGAGTCGTATAGCGAAGGGAACTTGGAGAAATTGGCAAAAGTCTTGGGGGAAAAGGAAAAGAATCTGCAGGAATTCCAAGAGTACTTGAAGCAACGTAAAATCGTTCTTACTCGCCTCAAGGACGAAGACATAATCTCTCTCTATGAAGATCGATTCTCCACTACTTTAAAATCATCCTCCAAATTGCTCCCAGACCTAATCGACACTCGGCCTCCCGTCGACCCGCTTTCCGAAGAGCGCTATTTAGAATGTGATTATTGTTCCGAAACCTTCTCCAACCGCGATGTTCTCGAGGAACATCTCAAGTCCCACGACTATCGTATCCTTCATTGCTGCGACGACTGTGGGGAAGAATTTCAAACCAATAAAGCGAAAAGAAATCATAATGTGATATGTGTGAGGaaattaatttgcaaatattgCGACATAATTCTGGATTCCAGAGGGAAAAAACGTCAACATGAGCAGAAACACGTTGACGCTCTTTATGGTCAACTTTGCGAGATTTGCGGCGAGAGATTCAAACACCAAGGAACTCTGGACCAGCACCTGAAGACGCAACATACGAGTTTGGAAAAGATTTATCAGTGTCCGAAGTGTccgaaaaaatttgcttttaaaCAAAAACTGAGCTTTCACTTGAAATCTGTTCATACAACTTTGAGAGCGTACCTTTGTGAGGATTGCGGTGCGGATTTTAAGAATCCTGCGAGCTTGAGACATCATAGAATCAGAAAACATCAACCGGTTGgaaataaaagggaatgtcaAGTTTGCAGCAAATTGGTGCCGTTTTACAGTTTGTCGAAGCACATGCACACGCATAAAGCTTACAGTATCCAGTGTCCACATTGCGACAAAATGTTCAAAAATAGCTCGACCTTGAAGCAACATGTGAGAATTCACGAAGATCAAAGGCAGTATCGTTGTGACACCTGCGGCGTTGGATTTAATCGGAGAGATGGTTTGAGGCTGCATATGAGAGTGCACGAAAAAACTGGTAGTAGAGGCTTGAAAGAGTGTTCCTGCCAAGTTTGTGGGGAAAAGTTTCCGAATCATTCGACTTTGGTGATTCATAGGAACAGAGTGCACAAAGATGGGAGGCAGTATACGTGTCACATTTGTAACAGGTCAATGATTTCGACGAGATCGCTCGAGTGGCACATGTCGCACATTCACAACGAGTCGATGCCAGGTATTATCCGCGACGCGTCTGGTCTGCCTGAAAAAAAACGGGTTTCCTGCTATCATTGCAACAAGACCTTCAAGACGGAACTAATTCTTCGCACACACATAAAAAATACGCACATGGAGAAGGACCCGTTGAAATGCGCCGAGTGCGCGGATATTTTCACATCTGAAGTACGTTTACGTCATCACATGATGGTCGTGCACAATCGTCTCGAGGGTACCTTGGCATGCCCTCATTGTCCGAAACGATTCGTGAACCAATTAAGGCTAAAGACTCACATGATTTCTCATTCTGAGGAAAGGCCGTATACCTGCGAGGTTTGCGGTTTCAACCTGAAGACAAAGATCCAGCTGATCAAGCATCATCAAAACCGACACAGTGACGAGAGACCTTTGCAGTGCAAGTACTGTTCTTGGCGATGCAAGCAAGTGAGCGCCCTTGTTTGTCACGAACGCACGCATACCAATGAACGCCCATATTCGTGCAGCGTGTGCCGGCAACGCTTCAAATATCTCGGTGACAAAAACAAGCATGAACGTCGTCATGAGAGCCTCGGTGGTTCAGGCTTCAAGCGTATCGTACCCGGAAGAAATGTCAAGCCGAAAGTACGCGCCGACGATTCCTCCGGATCTGAGCGGGAACCGGGCTCGCTCAAGGATTCGGCGAGTCGACGGGACATTCGGGTTACCGAGGAGCAATACGAGGAGCAGCAGGAAGGACAGTACGATCAGAAATTTCCGGAGGAACAGATGGTCAAATTCGAACAGGAGCAGATTGTCAAGTTTGAAGGTCAAGAGGAATACGAACAAGCGGTGTACGAGCAGGAGTATGAAGAAACTTCGAGAGAAGCATCGGAAGCTACCGAGGTAATTATGAACATGGAGGATTCCACGGTGTACACGGAGGAGGTTACGGCTGATAATATAGAGCCTAGCGTAGAGATCATGACGGACGAGATAATAACGAGTGACATTCTGCAATCTGGCACTGCTGTGATGCATCTGCAACATTGCAATAATTCCTCGGGGGAGATTCAAGTGATACCAGTGATGCTGTCCCTGCCCGAGCTGTCCGACGCAACCACTGAAGTAAATCTCGCGACCGCGTCAATCATGTATAATAATTAG
Protein Sequence: MPNPEINKRDHNYSESKPQHPNNGNGGAICKMSKIGSIVGQIRDINELKKIAPRVRLQDTESLNELTRISSLSNSKLQQNDTSVLERTRQELRKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDSLSTQMCMDCICDLRMSYKFFMQIKKAEIKLKSIHVNLTTDNATKKVTLIDESLTTKEEKLSSCIETKQEYQLSSTIQQNLSSLSSKQDDLTTPGNQAGDSGPKICAIFSLKDESKVKSGKEKEDNDEEEEEELQIGGGIFEEVAEGEDEESIEEFDPEDPALLEDEEEEKKSPRSPTTVYKYDMAAKSYVRLERSEEGVSVKSSQTSEGDGENQREGMSKPNILKRKLTMPTVTTKNGGGEDEVQSIVEERKVQKLDTNSLSNVNSPLEEDGIMYVTVKGSKPNEFLLVKVKKVDKPMESKRAVISTDLKPVERLLKRYETLTSKDFSSRRPDGREQIIEEQIEEYKKKREKVLGGQSVVTFTVNETQKEVQEQEISSKSNFEKVEDETLLKQVAGVKEEREQEQEEEEQEQEQEEQQQEEEEDEEEDEEEEEEEEEEEEKEEGNGDGDGDGDEDGDGDGDKEEKEFWNKIEKGENIDESQEKVHDNTEEYLSKLSRLKLKWEETKRKKESLQKELDESYSEGNLEKLAKVLGEKEKNLQEFQEYLKQRKIVLTRLKDEDIISLYEDRFSTTLKSSSKLLPDLIDTRPPVDPLSEERYLECDYCSETFSNRDVLEEHLKSHDYRILHCCDDCGEEFQTNKAKRNHNVICVRKLICKYCDIILDSRGKKRQHEQKHVDALYGQLCEICGERFKHQGTLDQHLKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECQVCSKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESMPGIIRDASGLPEKKRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCAECADIFTSEVRLRHHMMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEVCGFNLKTKIQLIKHHQNRHSDERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNVKPKVRADDSSGSEREPGSLKDSASRRDIRVTEEQYEEQQEGQYDQKFPEEQMVKFEQEQIVKFEGQEEYEQAVYEQEYEETSREASEATEVIMNMEDSTVYTEEVTADNIEPSVEIMTDEIITSDILQSGTAVMHLQHCNNSSGEIQVIPVMLSLPELSDATTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423842;
90% Identity: iTF_01407605;
80% Identity: -