Basic Information

Insect: Temnothorax rugatulus
Gene Symbol: -
Assembly: GCA_035220575.1
Location: JASTWL010002064.1:148883-154506[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.3 2.2e+02 4.0 9.7 2 23 333 355 332 355 0.97

2 18 0.051 8.4 8.4 2.2 1 23 403 425 403 425 0.97

3 18 0.4 67 5.6 0.6 1 23 474 496 474 496 0.97

4 18 0.048 8 8.5 0.2 1 21 543 563 543 564 0.92

5 18 0.0089 1.5 10.8 2.9 1 23 604 626 604 626 0.98

6 18 0.00029 0.048 15.5 0.4 1 23 675 697 675 697 0.98

7 18 0.00094 0.16 13.9 0.1 1 23 703 725 703 725 0.97

8 18 1.9e-05 0.0032 19.2 0.2 1 23 769 792 769 792 0.96

9 18 0.0011 0.18 13.7 0.9 1 23 798 821 798 821 0.96

10 18 6.9e-06 0.0012 20.6 1.0 2 23 829 851 828 851 0.97

11 18 0.00034 0.057 15.3 0.0 1 23 859 881 859 881 0.92

12 18 0.1 17 7.5 0.3 1 20 940 959 940 959 0.97

13 18 0.0093 1.5 10.7 0.0 2 23 979 1000 978 1000 0.96

14 18 1.6e-05 0.0027 19.4 1.2 1 23 1013 1035 1013 1035 0.98

15 18 0.00016 0.026 16.3 3.1 1 23 1057 1080 1057 1080 0.94

16 18 0.0017 0.29 13.0 1.6 2 23 1141 1163 1140 1163 0.96

17 18 0.00081 0.14 14.1 1.0 1 23 1185 1208 1185 1208 0.93

18 18 0.004 0.66 11.9 0.2 2 23 1302 1324 1302 1324 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.3	2.2e+02	4.0	9.7	2	23	333	355	332	355	0.97
2	18	0.051	8.4	8.4	2.2	1	23	403	425	403	425	0.97
3	18	0.4	67	5.6	0.6	1	23	474	496	474	496	0.97
4	18	0.048	8	8.5	0.2	1	21	543	563	543	564	0.92
5	18	0.0089	1.5	10.8	2.9	1	23	604	626	604	626	0.98
6	18	0.00029	0.048	15.5	0.4	1	23	675	697	675	697	0.98
7	18	0.00094	0.16	13.9	0.1	1	23	703	725	703	725	0.97
8	18	1.9e-05	0.0032	19.2	0.2	1	23	769	792	769	792	0.96
9	18	0.0011	0.18	13.7	0.9	1	23	798	821	798	821	0.96
10	18	6.9e-06	0.0012	20.6	1.0	2	23	829	851	828	851	0.97
11	18	0.00034	0.057	15.3	0.0	1	23	859	881	859	881	0.92
12	18	0.1	17	7.5	0.3	1	20	940	959	940	959	0.97
13	18	0.0093	1.5	10.7	0.0	2	23	979	1000	978	1000	0.96
14	18	1.6e-05	0.0027	19.4	1.2	1	23	1013	1035	1013	1035	0.98
15	18	0.00016	0.026	16.3	3.1	1	23	1057	1080	1057	1080	0.94
16	18	0.0017	0.29	13.0	1.6	2	23	1141	1163	1140	1163	0.96
17	18	0.00081	0.14	14.1	1.0	1	23	1185	1208	1185	1208	0.93
18	18	0.004	0.66	11.9	0.2	2	23	1302	1324	1302	1324	0.96

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATGGTGGAGTTCGGGAGCATGAAGAACGTCTGCAGACTGTGCCTATCCGCGGACGGGCCTAGATCCTCGGTGTTCGCAACGCGGGAGGACGAAGAGAAGGAGGACTCGTCCGGCCACGGCGTGCCGCTGGCCGCCAAGATTCAGGCTTGCCTGTCGATCCAGatttcagCAACCGACAGGTTGTCCACATTGATATGCGCAAATTGCGTGAAGAGCGTTAATCAATGGCACACCTACAAGGAGTCGTGCCTGCGTTCCCAGGACAAACTGCAAGAATGGCTGGCAAGTCAGTTGCAATCAAATCCTACGGTTATTCCAATATTCGCGGTCAAGGATGAACCAATGGACTTTGACGAAGATAATAATGTAGAAATTATCTCAGAGATCACCAATGATGTGGAGCAACCACATTCACCAATTCAAACAGTGGAAAACGATGAATGCAATAGTGAGAAAGTGCAAGAAGTAACGAATAACAGCGATGCGAAAGTACAAGAAGTAACAAATAAGAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGACGCGACAGTACAAGAAGTAACAAATAACAGCGATGATACTAACAAAGATCCTGAACCAGTCCCATCTACAGTGGAGAAGGAACCTAAtaaggaagaaaataaaacgGATCAGCAGGATTCTGTACCTCTGTGTTCCATTAAAAGCGAGCCACAGGATGAAGATGATACCCATAGTACTATAGAAGTAGAATCCACGAGTGGCAGTGAGTTGCTGTTGAATCCCATGGCAGCCAGCGGGACAGAGGACACGATCATGGAAGCCGATTCCACGCAGAGGTCTAACGCGGCCGGCGGACCGCCTAAGAAGAAATTGAGACGCGGTCCTCATACTCATTTTAGAGGAGCACGTGTTTTTAAGCAGAAGTGCCATCACTGCCAGATATTCCTGCACTCCAAGTACACGTACATGAAGCACATGAAGCGGTTCCACAGTAAAGAAAACGGCATTGACAATTCGGGATCGCAAAACGACGACGAGGAGATTGAAGATTTGGAAGATGAACTGATCAGCATGGAAAAGGACTCACCGCTGACGCAAGTCCAACAGGACATTATTAGTCAGCTGAAAACATTCTCTTGTTACTCTTGCGAACAGACGTTTAACGATCGACGCAGCACTCTCTCTCACATACGTCAACATATGCCAGATTTGAGACCGTATACGTGTATCGCCTGCCTGACGGAGTTTCCAGATCGATCGATGTATCAGTTACATTGTGGAGCTTCCTTCGAGTGCGCCATGAAGATCGCCCTAGTTGTACCGAAACATGGTAACGAACAATACTTTACGTGCAACATGTGTCTGCGCTCGATGCCTGGTAGGAAGGAATTACTTAGCCACTTGTCGAAACATTCTGACAAACAGTACGAAGAGATGATGTCGCCAACGCGACCTCCGCCCAAGCTGAAGCCGATGGCGCCGTTGCCATCGAAAAATAGCCATGATAAGATCATTAAAGGACCTTACAAGAACGGCGATCCGGCGCATAATCATGCCTGCGATCTATGCGGCATGATCTATCGATATCAGCCCAATATGGTCAAGCACAAGCAGATGTGCATGCGATTAGATCCGGAAAGCAGAGTCCTGTACAGATGCGTACATTGTTACATGACGTTCCTCGTGTTTAAGAAATTCCACTACCACATCACGGCCGACCATAAGAAGAAGGATTTTACTTGTTTCGTATGCTTTTCCGTATTTCGATCGCCGAGTGATTTCCTGACACATCACGAGACTCATCGCTCAACAACAACAACGCAGGCTGATCCACAAGTGCAACACGACGATACCTCGCAGAATGCAGCTCAAGCGCCATTGAAGGAACGCAACGCTTACGAAGCAAATGTCAAGTCGAGAATCAGTTCGCGAATATCAAGTCAGAAGTATAGCTGTCCCCTTTGTGCCCAGAAGTTCTCCACGAGGGTCGAGCTGAACGAGCATCGGAATCTCCATCTCAAAGTGAAGATATATTCGTGCGTCATTTGCCGCAGTATGTTCAGCAGCGCCGGCGCCTTGGAGATACATATGAAGGATCACGGTATCGACGACCCGAACGAGAGAAACGCCAATGTTTCCTGCATGGAATACGGCAGCTTGGACGAGGACGTGAGGATCGAGAAAGATTCGGTGAATACTAGTGCCATCTCGGATCCTGGTACGCAGATTCACGAGTGTGGCGAGTGCGGTAAGGTGCTATCCAATTACGCTAATCTCCGGCGACATGCTAAAATCGCTCACCGAAATTGTAAGATGTACGATTGTACCGAGTGCTCGCGTATGTTCATGCGTAAAGATCTGTATGatcaacatatgttaattaaacACAACTCTACGAAGACAATGCTGCAGTGTCCGCAGTGCCCTAAGAGTTTCGTCTTCCAATCAAATTTCACTTATCACTTCCGTACCGCCCATCTCGAGAAATCGCAGAACGGTTATGCCTGCGACATCTGCGGCAAGGTCTTCGTCGAGGAAGCGTCTTTGAAAATACACAAGGGCTGGCACAACCGTGCAAACTCGCGTCTCAGCACTCGATTCATACTCGGCAATCAAAAGGCGGCCAACGGCCCGCAGAAAGAATCTAGTAGCGTCGAGTCTGGTGAGAATTCAGAACGACCGGCGAGAGCACGAAAGTCTTTCCCAAATCCTCCACCTCAATCACCGTCGAAATCGGGAAGTTTCCAATGTCAGGTATGCAATGACAAATTCAACGATGTCACAGAGCTGAGGACCCATCTGTGGGACGTCCACTGCGCTCGTAACAAGCCGGAGAAGAGTTTCTCCAACGACGATCTTCAGTGCGAACTCTGCACGAACATTTTCCCCGATGAGGAGACCCTGGCATCTCACATGCAATGGCACAAGGCCAATCCCATTCTCAGCGACGTACAAAAGACATTCTCCTGCGACGTATGTGGCAAGTCTTACAGCTCGAAGAAGGTTCTGTGGAAGCACAAGAGGCTTCACAAGGCTACCGCTGTGGCCTCAATCAAATTCCAATCCTTAGCCAGAAAACCGATGGCCACACAGTTCCTGTGCAACTTTTGCCGCAAGGTCTTCTCGAGCAATCAGTCTCTTCAACGGCATAAACTTACCTTCCACAGTAGCGAATCGCAGAACCAACAGCGCGCGCAGCAACAACTGTATAACAGCAATCGAATATCGTCGTACGAGGACGAGCCGAAAACAAAGCGCATGAAGTTCGAGGTCGAAAGTGAAAATTCGCAGGCCAAGCTGTCGCCTTTCGCCATGGACTTCGCCGGTGAGAGAAGGAAGCCAGTCATGTGCCACGTTTGCAAGAAAATGTTCCCCAATATGAGCGTGCTGTACAAGCACAAGCAAACGGTCCATAAACCCCGTGTAAAAAAGGACTTGACGCCCGAATGCATTCCGATGTCGACTCAAGATGGCAAGTTTTCATGCAACATCTGCTTCAAGGAATTCCCCGGTCTGTCGAATCTGCGACAGCATTTCACGATCAAGCACAAGAAGACGGCAGCTGCCGAAGCCGGTAGCGCGTCGAGCAATGACAGACTGGTGCTCCCGACACCGGCCAAGGCACCCGAACGGCCAAGAGAATTCGAAGTGGCCTACAATAACGTGATGTACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAATAAGGAGTCCATCATGAGCCATATCACCAATGTGCACAACACAGTGTACCAGGCCGACAGCAAGATGTTCCATAGAGAGACCAATCTGAGCGCTTACATAGTGAAGGACGCGATCGGAGCTACTTGCCCGCTATGTGACGTCAAGTATCCTAATAACAGAGCTCTGAAGATACACTATATTAAATTCCACGATGATGCCGATTAA
Protein Sequence: MDEDVVEMVEFGSMKNVCRLCLSADGPRSSVFATREDEEKEDSSGHGVPLAAKIQACLSIQISATDRLSTLICANCVKSVNQWHTYKESCLRSQDKLQEWLASQLQSNPTVIPIFAVKDEPMDFDEDNNVEIISEITNDVEQPHSPIQTVENDECNSEKVQEVTNNSDAKVQEVTNKSDATVQEVTNNSDATVQEVTNNSDATVQEVTNNSDATVQEVTNNSDDTNKDPEPVPSTVEKEPNKEENKTDQQDSVPLCSIKSEPQDEDDTHSTIEVESTSGSELLLNPMAASGTEDTIMEADSTQRSNAAGGPPKKKLRRGPHTHFRGARVFKQKCHHCQIFLHSKYTYMKHMKRFHSKENGIDNSGSQNDDEEIEDLEDELISMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGNEQYFTCNMCLRSMPGRKELLSHLSKHSDKQYEEMMSPTRPPPKLKPMAPLPSKNSHDKIIKGPYKNGDPAHNHACDLCGMIYRYQPNMVKHKQMCMRLDPESRVLYRCVHCYMTFLVFKKFHYHITADHKKKDFTCFVCFSVFRSPSDFLTHHETHRSTTTTQADPQVQHDDTSQNAAQAPLKERNAYEANVKSRISSRISSQKYSCPLCAQKFSTRVELNEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPNERNANVSCMEYGSLDEDVRIEKDSVNTSAISDPGTQIHECGECGKVLSNYANLRRHAKIAHRNCKMYDCTECSRMFMRKDLYDQHMLIKHNSTKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILGNQKAANGPQKESSSVESGENSERPARARKSFPNPPPQSPSKSGSFQCQVCNDKFNDVTELRTHLWDVHCARNKPEKSFSNDDLQCELCTNIFPDEETLASHMQWHKANPILSDVQKTFSCDVCGKSYSSKKVLWKHKRLHKATAVASIKFQSLARKPMATQFLCNFCRKVFSSNQSLQRHKLTFHSSESQNQQRAQQQLYNSNRISSYEDEPKTKRMKFEVESENSQAKLSPFAMDFAGERRKPVMCHVCKKMFPNMSVLYKHKQTVHKPRVKKDLTPECIPMSTQDGKFSCNICFKEFPGLSNLRQHFTIKHKKTAAAEAGSASSNDRLVLPTPAKAPERPREFEVAYNNVMYSCKLCKQCHVFNKESIMSHITNVHNTVYQADSKMFHRETNLSAYIVKDAIGATCPLCDVKYPNNRALKIHYIKFHDDAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765843;
90% Identity: iTF_01409401;
80% Identity: -