Trug004605.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- -
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000034.1:807073-811803[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.026 4.4 9.3 3.1 1 23 433 455 433 455 0.97 2 19 0.022 3.6 9.6 0.5 2 23 491 512 490 512 0.96 3 19 0.00058 0.096 14.5 1.1 1 23 579 601 579 601 0.96 4 19 0.00067 0.11 14.3 0.7 1 23 604 626 604 626 0.98 5 19 7.8e-06 0.0013 20.4 0.9 2 23 669 691 668 691 0.96 6 19 0.0045 0.76 11.7 3.1 1 23 697 719 697 719 0.96 7 19 0.00086 0.14 14.0 0.7 1 20 725 744 725 749 0.94 8 19 2.5e-05 0.0042 18.8 1.3 1 23 823 845 823 845 0.97 9 19 0.00027 0.045 15.6 4.2 1 23 904 926 904 926 0.96 10 19 0.00038 0.064 15.1 0.7 1 20 931 950 931 952 0.94 11 19 0.064 11 8.1 0.3 2 23 963 984 963 984 0.97 12 19 3.9e-05 0.0065 18.2 0.6 2 23 1023 1044 1022 1044 0.97 13 19 3.6e-05 0.0059 18.3 1.6 1 23 1049 1071 1049 1071 0.95 14 19 0.0015 0.25 13.2 1.7 1 20 1077 1096 1077 1099 0.93 15 19 6.3e-06 0.001 20.7 0.4 1 23 1115 1137 1115 1137 0.95 16 19 5.1e-07 8.5e-05 24.1 0.6 1 23 1143 1165 1143 1165 0.99 17 19 5.6e-05 0.0092 17.7 0.2 1 23 1171 1193 1171 1193 0.97 18 19 0.033 5.5 9.0 6.9 1 23 1199 1221 1199 1221 0.96 19 19 0.007 1.2 11.1 0.6 1 20 1227 1246 1227 1248 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAGATAAATACGTCGGGTCCGCCGCAGGGCGAGGACGCGATCGCGTCCGGCATGAAGATATGCCGCGTCTGCCTGCTCGGCAACCTGATGATGCGCGACCTCTTCCTGGAGAGCGAGGTCGCGTCCCTGTCGGCGAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGCGACGGTCTACCGGCGCAGGTGTGCTGCATGTGCGCCGCCAAGTTGGAGTCGGCGTACGAGTTCAAGTTACAAGTGGAGCAAGCCGACAATGTTCTTCGAGGAAAGCTCGTCGGTGGAATAATAAAGGAGGAGTTGTTTCTTAACGAAGTCGAAATACACTTGGATGCCGAGAGGAATGACAGTATAGAAGAGATAAATGTCAATGCTGATTATGAATCTACCACTACGGTATTGCCAGTGGAGTCAGCAGCTGACAAGAACTTTCTGAAAAATCAGTTAATGATTTTGGAAGCTGAGAAATTGGAAGCAGAGACAGAGGAAATTCAACAAGATTCAGAACAAGATAACTCGCAAGAAAGCATTGTGGAAGAATTGCAGCAAGAATTAACCGACGCGGAAGACAATGATATGTCAGATGCTATCGATGAATCTAGGGCTGAAGAAGCTTCCAGCGACGAGAATATCATTCGAAGTTGCACAGATGTAATTCCAACAGAGGAACATGATTACATTATGCAGCAATGTAGTTTGCCTGCTGAGCAACTCTCCTTGCAGGAAGAAATGCAGGAAAATGTACCAGAACTTGAACAAGACACAGTTGAATGCCAAGAAACATCGTCTGGACAAAACCAAGAGATTCAGGCTGAACAAAATCAAGAGATTCAAGCTGAGGAAGATCAAGAGATTCAAGCTGAGCAAATTCACGAAATTCAAGCTGAGCAAAACCAAGAGATTCAGGCTGAAATAAATCAAGAGATTCAGGCTGAAATAAATCAAGAGATTCAGGCTGAAATAAACCAAGAGATTCAGGCTGAAATAAATCAAGAGTTTCAGGCTGAATTAGATCAAGAAGCTCAAGCTGAGCGGGAGAATCAAGCTGAGCAAAATCAAAATGACACAGAGGTATTATGCAAGGAGGAAACGCTCATAGCTAATACTAATGAGCCAGTGGAACAGGAATCATCCCAGAATGAAACTAGGAGAAGTAAACGTAGATTGACTCGTCGGATATTTACCGAGCGGAATTCCGACGAGGAGaattatttcgaaaatctgAATCTCAGTTCTCGATTGAAAAAAGCGCAGTCGGACAAGACGGAGAAGATCTTTTTCATGTGTTACTTGTGCGATAAGCAATTCCTTTCGAAGAGCGTCCTGAAAGAACATATGCATTCCCATGAAGAAGTGAGAAAAACACTATCTCTGAAGAAAACACCGGAGAAACCGCAGAAGGTGCAGACCAGCGTTTCCGCGAAGACGCCGCCATCCGGAAAGAAAGCCAACAAGTGCCCTTATTGTGGTAAAGAGTATCTGTACATAATCTCGTTTACCAAACACATTAAGCAACACGAGCGGGAGCGGGAGGAAGCGAAGGAGGATCCAATGCCACTCGAGATATCGTTCCATGAGGATGAGCACAGTCTGGACTTCGATAACGGCAACAGATCGGATGGCGAGTGCAAGAAGCGAAAGAGAAGAAATACAGCCGACGATGACGCGAGCGACAGCGATCAGGATAAGAGAAGAAAGCGCAGTCACGTTGAGGAGTTTGCGTGTGACAAATGTTCAGAAAAATTCGACACAAAGCGAGGCTTGCAGAAGCATTCGATCACGCATGTTAGCTTCGAGTGCAGCGTGTGTAACGAGGAGTACGACACTCTGGAACAACTGAGAAATCACCGAACGAAGCACGTGGTCGAAGGAGTGCTCACCGAACAGGATTTGGAAGAGGACATGAAGCAGATGAAGAGCGAGAACAACGAAGACAACAAGAGCATCGAGATTGAGGAGCACAACGGCGAAAACACGAAGGAACTGAAGTGCCCGATGTGTTCGATGACGTTCTCGCGTAAGAAAGCGCTGTCCAGACACATTGAGACGACACACTCCAGCACCCGCTCTTACGAATGCAAGATATGCTGTCAACAATTCACACGGAAGGATCTCCTGCGCAGGCACGCCGAGCAGCACGCACGAGTGAAGACCTATAAGTGTACCCAGTGCAATAAGACCTTCGGCAACGAGCTCACGCTGAGAAATCACCTGGTTGCCACGAATCACAAGACATTCGTACACGGGCAGGAATACGATCCGAATAAGCGTATAAAGCGCGTGGCGGCGAGAGCGGCGCAGAAGATCATCGACAAGATCAAGACGGAGGACGGCCTCGAGGATTACgacgacgataacgacgacAATACCGATTACGATGCCAAGTTCGACGGGCATTATCGCCGTAAGCGCGACGCTACACCAAAGAAGTACAGTTATAAGAAGGAGTTTGAGTGCGCGACCTGTAACAAGAGGTACAGCTCGAAGCAAGCGCTGACGAAGCACATGGAGCAGCATGTGAAGGAGGAGAAAGCGGAAAAGGCAGCGGAGAAGGCGGCGGAGAAGCTGAAGAAGGCCGCTTTGGAAAAGAAGGAGGCGCAGAAGAAGGAGACGACGAGCAGCATGGGCGATAACGACGATGACGATAACGACTCCGACTTCGAGAGCGGCCTCGACTGGCCGATGGACAGTCACGAATGCCCCACGTGCAAGAAGCGATACAGCACGAAGAAGTCGCTGCTGCGCCACAAGCTGCTGCACGAGGAGCCGAACTTCGAGTGTGACATCTGCAACGTCAAGTTTTACCGCAAGGACAAGCTGAAGGCGCACTACGACAAGTGTTCCGAGAAGAATCCCGACCAGGTGAGAAAGTGCAATATCTGCGGCGACAGCTTTGAGAACAACGAGATCCTGCGCGAGCACAGAGCCAAGCACGTCACTGAAGGTATCTTAACGGAGGAGGATCTGATGGACATCGAGCCGAAATCCGAAGAGAAGAAACCGGGCGAGAAGATCGGTCGGAAGCGGAGGACCGATATCGTGGGGCTCGAGTGTACCGAATGCAACAAACAGTACACCTCCAGGAAAGGTCTACTGCGGCACATTCAGGTGCACGAGGGCAAGAAGTACCTGTGCGACATATGCCCGAAGAAGTTCTACCGGCGGGAACATCTCAAGATCCACGTGGCCAAGCACAACATGATCAAGCCGTACAAATGCACCCGATGCACCAAGCGCTTCATCAAGGAGGAGCAGCTCAACAATCACCTGCCTAAGCACGATCGCACGTTCAAGAAGACCAAGGAGACCGACAGCTCCAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACGACGCTGATAGCGCATCTGCGCGCCCACAACGGTATCAAGCCGTACGTGTGCGAGGTATGCTCCAGGCCGTTCACCACCAACGCCTACTTGAAGATGCATATGCGCACGCACACGCAGGAACGTCCGTACATCTGCCAGTACTGTTCGCGAGCGTTCGCGCGAGCCGACACCTTGGCGAATCATCTGACGTCGCACACTGGCGAGGCCAAGTATCACTGCAAGTGCTGTCCGAAGAACTTCCGACGATTGAAATCGCTGAAGGAGCACATGTTTATTCATACGGGTCAGCGGCCTTACGAGTGTCCAACTTGCGACAGGAAGTTCAACAATAATGGCAGCCGCTATGCCCACAGCAAGCGCTGCAAGCAGAATCTTTTGCAGAATCAGAACCGGGCGCAGCAGATGATCCAGCAGACGACGCAGcatcagcaacagcaacagcatcaacagcagcagcagcagcaacagcagcagccgcagcaaGTGCAGATACAAGTGCAGCAGCAGCCGCATCCAGTCAGGTTGCATCAAACCATCGGCCAGGCGCAAGTAGTCAAGGCGCAGAACATCAAAACGATCGCTATAGCGAGACCGGCTGAGCCTACCACGGTAACCACGGCGCAACAAGTTATGCAGCATCAGGAGATACTAATGCCTCTGATCCTGCCGCTTACCGTCACACTCACCGACGTAGGCGAGGAGGTGATACTACCCGAGGGTACAAAGATATACACCACCTCTTAA
- Protein Sequence
- MDAVEINTSGPPQGEDAIASGMKICRVCLLGNLMMRDLFLESEVASLSAKAMSFANVKMLPGDGLPAQVCCMCAAKLESAYEFKLQVEQADNVLRGKLVGGIIKEELFLNEVEIHLDAERNDSIEEINVNADYESTTTVLPVESAADKNFLKNQLMILEAEKLEAETEEIQQDSEQDNSQESIVEELQQELTDAEDNDMSDAIDESRAEEASSDENIIRSCTDVIPTEEHDYIMQQCSLPAEQLSLQEEMQENVPELEQDTVECQETSSGQNQEIQAEQNQEIQAEEDQEIQAEQIHEIQAEQNQEIQAEINQEIQAEINQEIQAEINQEIQAEINQEFQAELDQEAQAERENQAEQNQNDTEVLCKEETLIANTNEPVEQESSQNETRRSKRRLTRRIFTERNSDEENYFENLNLSSRLKKAQSDKTEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKTLSLKKTPEKPQKVQTSVSAKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFDNGNRSDGECKKRKRRNTADDDASDSDQDKRRKRSHVEEFACDKCSEKFDTKRGLQKHSITHVSFECSVCNEEYDTLEQLRNHRTKHVVEGVLTEQDLEEDMKQMKSENNEDNKSIEIEEHNGENTKELKCPMCSMTFSRKKALSRHIETTHSSTRSYECKICCQQFTRKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFVHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDDNTDYDAKFDGHYRRKRDATPKKYSYKKEFECATCNKRYSSKQALTKHMEQHVKEEKAEKAAEKAAEKLKKAALEKKEAQKKETTSSMGDNDDDDNDSDFESGLDWPMDSHECPTCKKRYSTKKSLLRHKLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLMDIEPKSEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLPKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMIQQTTQHQQQQQHQQQQQQQQQQPQQVQIQVQQQPHPVRLHQTIGQAQVVKAQNIKTIAIARPAEPTTVTTAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIYTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126152;
- 90% Identity
- iTF_01409382;
- 80% Identity
- -