Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: -
Assembly: GCA_030848795.1
Location: JASTWM010000393.1:130598-136003[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.3 2.1e+02 4.0 9.7 2 23 354 376 353 376 0.97

2 18 0.052 8.1 8.4 2.2 1 23 424 446 424 446 0.97

3 18 0.41 65 5.6 0.6 1 23 495 517 495 517 0.97

4 18 0.05 7.7 8.5 0.2 1 21 565 585 565 586 0.92

5 18 0.026 4.1 9.3 2.9 1 23 626 648 626 648 0.98

6 18 0.00014 0.022 16.5 0.3 1 23 699 721 699 721 0.98

7 18 0.00096 0.15 13.8 0.1 1 23 727 749 727 749 0.97

8 18 2e-05 0.0031 19.1 0.2 1 23 793 816 793 816 0.96

9 18 0.0011 0.17 13.6 0.9 1 23 822 845 822 845 0.96

10 18 7.1e-06 0.0011 20.6 1.0 2 23 853 875 852 875 0.97

11 18 0.00035 0.054 15.2 0.0 1 23 883 905 883 905 0.92

12 18 0.1 16 7.5 0.3 1 20 964 983 964 983 0.97

13 18 0.0024 0.38 12.6 0.1 2 23 1003 1024 1002 1024 0.96

14 18 1.7e-05 0.0026 19.4 1.2 1 23 1037 1059 1037 1059 0.98

15 18 0.00032 0.05 15.3 3.0 1 23 1081 1104 1081 1104 0.93

16 18 0.0018 0.28 13.0 1.6 2 23 1165 1187 1164 1187 0.96

17 18 0.00084 0.13 14.0 1.0 1 23 1209 1232 1209 1232 0.93

18 18 0.0041 0.64 11.9 0.2 2 23 1326 1348 1326 1348 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.3	2.1e+02	4.0	9.7	2	23	354	376	353	376	0.97
2	18	0.052	8.1	8.4	2.2	1	23	424	446	424	446	0.97
3	18	0.41	65	5.6	0.6	1	23	495	517	495	517	0.97
4	18	0.05	7.7	8.5	0.2	1	21	565	585	565	586	0.92
5	18	0.026	4.1	9.3	2.9	1	23	626	648	626	648	0.98
6	18	0.00014	0.022	16.5	0.3	1	23	699	721	699	721	0.98
7	18	0.00096	0.15	13.8	0.1	1	23	727	749	727	749	0.97
8	18	2e-05	0.0031	19.1	0.2	1	23	793	816	793	816	0.96
9	18	0.0011	0.17	13.6	0.9	1	23	822	845	822	845	0.96
10	18	7.1e-06	0.0011	20.6	1.0	2	23	853	875	852	875	0.97
11	18	0.00035	0.054	15.2	0.0	1	23	883	905	883	905	0.92
12	18	0.1	16	7.5	0.3	1	20	964	983	964	983	0.97
13	18	0.0024	0.38	12.6	0.1	2	23	1003	1024	1002	1024	0.96
14	18	1.7e-05	0.0026	19.4	1.2	1	23	1037	1059	1037	1059	0.98
15	18	0.00032	0.05	15.3	3.0	1	23	1081	1104	1081	1104	0.93
16	18	0.0018	0.28	13.0	1.6	2	23	1165	1187	1164	1187	0.96
17	18	0.00084	0.13	14.0	1.0	1	23	1209	1232	1209	1232	0.93
18	18	0.0041	0.64	11.9	0.2	2	23	1326	1348	1326	1348	0.96

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATGGTGGAGCTCGGGAACATGAAGAACGTCTGCAGACTGTGCCTTTCCGCGGACGGGCCTAGATCCTCGGTGTTCGCAACGGAGGAGGACGAAGAGAAGGAGGACTCGTCCGGCCACCGCGTGCCGCTGGCCACCAAGATTCAGGGTTGCCTGTCGATCCAGatttcagCAACCGACAGGTTGTCCATATTGATATGCGCAAATTGCGTGAAGAGCGTTAATCAATGGCACACCTACAAGGAGTCGTGCCTGCGTTCCCAGGACAAACTGCAAGAATGGCTGGCAAGTCAGTTGCAATCAAATCCTCCgGTTATTCCAATATTCACGATCAAGGATGAACCAATGGACTTTGACGAAGATAATAATGTAGAATTTATCTCAGAGGTCACCAATAATGTGGAGCAACCACATTCACCAATTCAAACAGTGGAGAACGATGAATGCAATAGTGAGAAAGTGCAAGAAGTAACGAATACCAGCGATGCGAAAGTACAAGAAGTAACAAATAAGAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGATGCGACAGTACAAGTAACAAATAACAGCGATGCGACAGTAGAAGAAGTAACAAATAACAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGATGATACTAACAAAGATCCTGAACCAGTCCCATCTGCGGTGGAGAAGGAACCTAATaaggaagaaaataaagcGGATCAGCAGGATCCTGTAGCTCTGTGTTCCATTAAAAGCGAGCCACAGGATGAAGACGATACCTATAGTACTATAGAAGTAGAATCCACGAATAGCAGTGAGTTGCTGTTGAATCCTATGGCAGCCAGCGGGACAGAGGACACGATCATGGAGGCCGATTCCACGCAGAGGTCTAACGCGGCCGGCGGACCGCCTAAGAAGAAATTGAGACGCGGTCCTCATACCCATTTTAGAGGAGCGCGTGTTTTTAAACAGAAGTGCCATCACTGCCAGATATTCCTGCACTCCAAGTACACGTACATGAAGCACATGAAGCGGTTCCACAGTAAAGAAAACGGCATTGACAATTCGGGATCGCAAAACGACGACGAGGAGATTGAAGATGTGGAAGATGAACTGATTAGCATGGAAAAGGACTCACCGCTGACGCAAGTCCAACAGGACATTATTAGTCAGCTGAAAACGTTCTCTTGTTACTCTTGCGAGCAGACGTTTAACGATCGACGCAGCACTCTCTCTCACATACGTCAACATATGCCAGATTTGAGACCATATACATGTATCGCCTGCCTGACGGAGTTTCCAGATCGATCGATGTATCAGTTACATTGTGGAGCTTCCTTCGAGTGCGCCATGAAGATCGCCCTAGTTGTACCGAAACATGGTCACGAACAATACTTTACGTGCAACATGTGCCTGCGCTCGATGCCTGGTAGGAAGGAATTACTCAGCCACTTGTCCAAGCATTCTGACAAACAGTACGAAGAGATGATGTCGCCAACACGAGCTCCGCCCAAGCTGAAACCGATGGCGCCGTTGCCATCGAAAAATAGCCTTCCCGATAGGATCATGAAAGGACCTTACAAGAACGGCGATCCGGCGCATAATCATGCCTGCGATCTATGCGGCATGATCTATCGATACCAGCCCAATATGGTCAAGCACAAGCAGATGTGCATGCGATTAGATCCGGAAAGCAGAGTCCTGTACAGATGCGTACATTGTTACATGACGTTCCTCGTGTTTAAGAAATTTCACTACCACATCACGGCCGACCATAAAAAGAAGGATTTTACTTGTTTCGTATGCTTTTCCATATTTCGATCGCCGAGTGATTTCCTGACACATCACGAGACTCATCGctcaacaacaacaacaacaacgcAGGCTAATCGACAAGTGCAACACGACGATACCTCGCAGAATGCAGCTCAAGCGCCATTGAAGGAACGCAACGCTTACGAAGCAAATGTCAAGTCGAGAATCAGTTCGCGAATATCAAGTCAGAAGTATAGCTGTCCCCTTTGTGCCCAGACATTCTCCACGAGGGTCGAGCTGAACGAGCATCGGAATCTCCATCTCAAAGTGAAGATATATTCGTGCGTCATTTGCCGCAGTATGTTCAGCAGCGCCGGCGCCTTGGAGATACATATGAAGGATCACGGTATCGACGACCCGAACGAGAGAAACGCCAATGTTTCCTGCATGGAATACGGCAGCTTGGACGAGGACGTGAGGATCGAGAAAGATTCGGTGAATACTAGTGCCATCTCGGATCCTGGTACGCAGATTCACGAGTGTGGCGAGTGCGGTAAGGTGCTATCCAATTACGCTAATCTCCGGCGACATGCTAAAATCGCTCACCGAAACTGTAAGATGTACGATTGTACCGAGTGCTCGCGTATGTTCATGCGTAAAGATCTGTATGATCAACATATGTTAATTAAACACAACTCTACGAAGACAATGCTGCAGTGTCCGCAGTGCCCTAAGAGTTTCGTCTTCCAATCAAATTTCACTTATCACTTCCGTACCGCCCACCTCGAGAAATCGCAGAACGGTTATGCCTGCGACATCTGCGGCAAGGTCTTCGTTGAGGAAGCGTCTTTGAAAATACACAAGGGCTGGCACAACCGTGCAAACTCGCGTCTCAGCACTCGATTCATACTCGGTAATCAAAAGGCGGCCAATGGACCGCAGAAAGAATCTAGTAGCGTCGAGTCTGGTGAGAATTCAGAACGACCGGCGAGAGCACGGAAGTCTTTCCCAAATCCTCCACCTCAATCACCGTCGAAATCGGGAAGTTTCCAATGTCAGGTATGCAATGACAAATTCAACGATGTCACGGAGCTGAGGACCCATCTGTGGGACGTCCACTGCGCTCGTAACAAGCCGGAGAAGAGTTTCTCCAACGACGATCTTCAGTGCGAACTCTGCACGAACATTTTCCCCGATCAGGAGACCCTGGCATCTCATATGCAATGGCACAAGGCCAATCCCATTCTCAGCGACATACAAAAGACATTCTCCTGCGACGTATGCGGCAAGTCTTACAGTTCGAAGAAGGTTCTGTGGAAGCACAAGAGGCTTCACAAGGCTACCGCTGTGGCCTCGATCAAATTCCAATCCTTAGCCAGAAAACCGATGGCCACACAGTTCCTGTGCAACTTTTGCCGCAAGGTCTTCTCGAGCAATCAGTCTCTGCAACGGCATAAACTTTCCTTCCACAGTAGCGAATCGCAGAACCAACAGCGCGCGCAGCAACAACTGTATAACAGCAATCGAATATCGTCGTACGAGGACGAGCCAAAAACGAAGCGCATGAAGTTCGAGCTCGAAAGTGAAAATTCGCAGGCCAAGCTGTCGCCTTTCGCCATGGACTTCGCCGGTGAGAGAAGGAAGCCGGTCATGTGCCACGTTTGCAAGAAAATGTTCCCCAATATGAGCGTGCTGTACAAGCACAAGCAAACGGTCCATAAACCCCGTGTAAAAAAAGACTTGACGCCCGAATGCATTCCGATGTCGACTCAAGATGGCAAGTTTTCATGCAACATCTGCTTCAAGGAATTCCCCGGTCTGTCGAATCTGCGACAGCATTTCACGATCAAGCACAAGAAGACGGCAGCTGCCGAAGCCGGCAGCGCGTCGAGCAATGACAGATTGGTGCTGCCGACACCGGCCAAGGCACCCGAACGGCCAAGGGAATTCGAAGTGGCCTACAATAACGTGATGTACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAATAAGGAGTCCATCATGAGCCATATCACCAATGTGCACAACACAGTGTACCAGGCCGACAGCAAGATGTTCCATAGAGAGACCAATCTGGGCGCTTACATAGTGAAGGACGCGATCGGAGCTACTTGCCCGCTATGTGACGTCAAGTATCCTAATAACAGAGCTCTGAAGATACACTATATTAAATTCCACGACGATGCCGATTAA
Protein Sequence: MDEDVVEMVELGNMKNVCRLCLSADGPRSSVFATEEDEEKEDSSGHRVPLATKIQGCLSIQISATDRLSILICANCVKSVNQWHTYKESCLRSQDKLQEWLASQLQSNPPVIPIFTIKDEPMDFDEDNNVEFISEVTNNVEQPHSPIQTVENDECNSEKVQEVTNTSDAKVQEVTNKSDATVQEVTNNSDATVQEVTNNSDATVQEVTNNSDATVQVTNNSDATVEEVTNNSDATVQEVTNNSDDTNKDPEPVPSAVEKEPNKEENKADQQDPVALCSIKSEPQDEDDTYSTIEVESTNSSELLLNPMAASGTEDTIMEADSTQRSNAAGGPPKKKLRRGPHTHFRGARVFKQKCHHCQIFLHSKYTYMKHMKRFHSKENGIDNSGSQNDDEEIEDVEDELISMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGHEQYFTCNMCLRSMPGRKELLSHLSKHSDKQYEEMMSPTRAPPKLKPMAPLPSKNSLPDRIMKGPYKNGDPAHNHACDLCGMIYRYQPNMVKHKQMCMRLDPESRVLYRCVHCYMTFLVFKKFHYHITADHKKKDFTCFVCFSIFRSPSDFLTHHETHRSTTTTTTQANRQVQHDDTSQNAAQAPLKERNAYEANVKSRISSRISSQKYSCPLCAQTFSTRVELNEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPNERNANVSCMEYGSLDEDVRIEKDSVNTSAISDPGTQIHECGECGKVLSNYANLRRHAKIAHRNCKMYDCTECSRMFMRKDLYDQHMLIKHNSTKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILGNQKAANGPQKESSSVESGENSERPARARKSFPNPPPQSPSKSGSFQCQVCNDKFNDVTELRTHLWDVHCARNKPEKSFSNDDLQCELCTNIFPDQETLASHMQWHKANPILSDIQKTFSCDVCGKSYSSKKVLWKHKRLHKATAVASIKFQSLARKPMATQFLCNFCRKVFSSNQSLQRHKLSFHSSESQNQQRAQQQLYNSNRISSYEDEPKTKRMKFELESENSQAKLSPFAMDFAGERRKPVMCHVCKKMFPNMSVLYKHKQTVHKPRVKKDLTPECIPMSTQDGKFSCNICFKEFPGLSNLRQHFTIKHKKTAAAEAGSASSNDRLVLPTPAKAPERPREFEVAYNNVMYSCKLCKQCHVFNKESIMSHITNVHNTVYQADSKMFHRETNLGAYIVKDAIGATCPLCDVKYPNNRALKIHYIKFHDDAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765843;
90% Identity: iTF_01409401;
80% Identity: -