Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: SCRT1
Assembly: GCA_030848795.1
Location: JASTWM010001536.1:2436831-2440538[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.7 1.4e+03 1.4 0.1 3 11 65 73 63 80 0.65

2 13 0.00073 0.11 14.2 0.2 1 23 230 252 230 252 0.94

3 13 1.8e-05 0.0027 19.3 1.2 1 23 260 282 260 282 0.98

4 13 1.6e-05 0.0025 19.4 0.3 2 23 290 311 289 311 0.96

5 13 9.4e-06 0.0015 20.2 1.3 1 23 317 339 317 339 0.99

6 13 9.3e-05 0.015 17.0 2.7 1 23 346 368 346 368 0.98

7 13 2.3e-06 0.00035 22.1 1.7 1 23 374 396 374 396 0.95

8 13 1.3e-05 0.0021 19.7 0.4 1 23 402 424 402 424 0.98

9 13 7.3e-07 0.00011 23.7 1.2 1 23 430 453 430 453 0.96

10 13 4e-06 0.00063 21.3 0.5 1 23 459 482 459 482 0.96

11 13 1.5e-06 0.00023 22.7 1.7 1 23 488 510 488 510 0.99

12 13 9.5e-05 0.015 17.0 0.4 1 23 516 538 516 538 0.94

13 13 0.0003 0.046 15.5 0.1 1 23 544 568 544 568 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.7	1.4e+03	1.4	0.1	3	11	65	73	63	80	0.65
2	13	0.00073	0.11	14.2	0.2	1	23	230	252	230	252	0.94
3	13	1.8e-05	0.0027	19.3	1.2	1	23	260	282	260	282	0.98
4	13	1.6e-05	0.0025	19.4	0.3	2	23	290	311	289	311	0.96
5	13	9.4e-06	0.0015	20.2	1.3	1	23	317	339	317	339	0.99
6	13	9.3e-05	0.015	17.0	2.7	1	23	346	368	346	368	0.98
7	13	2.3e-06	0.00035	22.1	1.7	1	23	374	396	374	396	0.95
8	13	1.3e-05	0.0021	19.7	0.4	1	23	402	424	402	424	0.98
9	13	7.3e-07	0.00011	23.7	1.2	1	23	430	453	430	453	0.96
10	13	4e-06	0.00063	21.3	0.5	1	23	459	482	459	482	0.96
11	13	1.5e-06	0.00023	22.7	1.7	1	23	488	510	488	510	0.99
12	13	9.5e-05	0.015	17.0	0.4	1	23	516	538	516	538	0.94
13	13	0.0003	0.046	15.5	0.1	1	23	544	568	544	568	0.94

Sequence Information

Coding Sequence: ATGATGGCTGACTCCGATAAAGATTCCACACAATGCTTAGTGTGCGACAGTAAAATTGGAGTATCCACTCGAAACAGTATTCGCATCTTTGACGATTCCAGTTGCACTGCAAGTGAGAGATCACTGGTGGATGTTGTATCAGCTGTTTTAGAAATTGATATCAATGAGGAATCTGCGCATTCCAATGtcatttgtaaaaaatgttttaagcTGTTCAATGAGgTGGATGAACTTGAAAGTAAATTAACGGAAGTCAAAATGGAGTTATGTAACAATTATAAGAAGACAATtgaagttaaaaaattatgtgacATACTTCAAAATGAAGATTATAACGATCATGATTATACTGATAATACGGAAAGTCAACACACAATAGAGgAAGTGcaagaagaagataaagatTATGTACCAGAGGACGATACAGAGACACAAGAGGAGGGAGAACAAGAACTGCTTGTAGAATCAGAAGAATTCACGGTTGAAGAAGCGGACGAAACAAATAGTTCTGATGGCAAAAAGAAATCGAAGAAGAGCAAAGTTAAAGTACATCGCCCTCAGGAAAATATTGTATTCAAAGATGAATCTTCGTACACCTGCTTCTTGTGTCCAAACGACGAGGAGAGATTCACGGGAGATGCTAAAATCATTGTAGTGCACATGAAAGAGGTGCACGATGTTCGTTTGTATATTTGCGACGTATGTGGACAGGATTTTAGAAAGAGAAACGAACTCTCCATGCATCTCGACGATCACGTCGCGAAGGAGGAAGGTGACTTTCAATGCGAGATATGTAATAGAATATTTAGTAATCTGCGACTATTCCGAATTCATAAAAGGATACATTATCCCCAAGTGAAATCATGGCCCTGCGTGACATGTGGGAAAAAATACAAttccaaaaatttattagagGAACATATGAACACACACACGGGTGTTCGCCCATACGTGTGCGAGACTTGTAACAAGGACTTTGCATCCAAGTATACGTATAAAGCACACGTAAAAACACATGAAGTACGACCTCGTCCATTCGAGTGCACTCGATGtaataaaacgtttttaaGCCAGCAAAATTTGACTCAACATGAACGGACGCATAATGGCATAAAGGAATATATATGCCATCAGTGTgGGAAGGCTTTTACATCATCTCACAATTTAGAGGTACATAACATAGTACATACCGGATATAAACCCTACATGTGCAAAATATGTAGCAAAGCGTTTGCACGTAAAGCGGAAATACGTGATCATGAGAGAACTCACACAGGTGAAAAACCTTATCAATGCGAGTTTTGTGGAGCAACATTTAGTCAGAGATCGAATCTACAATCCCATAAGCGGGCGACGCATTATAATGACAAACGTTACAAGTGTGACGACTGTGGAAAAGGTTTCAAAAGAAGAAGATTATTGGATTATCATATAAAAGCGGTGCATACTGGCGAAAGGCCGTATAAATGTGACGTATGTGGAGCTACATTTGTCTATCCTGAGCATTTCAAGAAGCACAGACGTATACATACAGGCGAGAAACCATATCTTTGCGAGGTCTGTGGCAAAGCATTTAACAGCAGAGATAACAGAAACGCTCATAGATTTATACACAGCGATAAAAAGCCGTATGAATGTTTAGTGTGTGGCATGGGCTTTATGAGAAAACCATTACTTTATGCACACATGCAAACTCAGgGTCACTTAAATGATACCATAGTAGTGAACCAACCGCGACTGACAACGGAAGACGATCAAGTAATAACTATTCCCAATAATGGCGAACTGTTGATGGAAGAAGTTGAGAATCAACAACagCTGGACGAAACTGGGTTATATGTGACCGAACTGAAAGATCATGTGATTATACAACAAGAAGGGGAAGATCAGATATATAATGAAGAGGATGTTGTGTTAAATATTCCGGCAGAAGAAGTCGTAAGCGCCGAAGTCGACCATCTTGTCGTCGAAAATCaaaTCGAGTTTGTGAAAACTGAAACTGTAGAAAATAAACCGGATATTAATCAAGTAGAAACGGTATACGCTTTTAACGAGAATGATGAAGGCGAGACGATAGTTGTACCAGCTTCAGGAGAGAACAAGAACGTGCGATTAGTGCAGATCAGATTTCCGACTTCTGTAGATGAAGAAGGCAGAAGCTGGTTGAGCTTAGTACAAAATACTTGA
Protein Sequence: MMADSDKDSTQCLVCDSKIGVSTRNSIRIFDDSSCTASERSLVDVVSAVLEIDINEESAHSNVICKKCFKLFNEVDELESKLTEVKMELCNNYKKTIEVKKLCDILQNEDYNDHDYTDNTESQHTIEEVQEEDKDYVPEDDTETQEEGEQELLVESEEFTVEEADETNSSDGKKKSKKSKVKVHRPQENIVFKDESSYTCFLCPNDEERFTGDAKIIVVHMKEVHDVRLYICDVCGQDFRKRNELSMHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCVTCGKKYNSKNLLEEHMNTHTGVRPYVCETCNKDFASKYTYKAHVKTHEVRPRPFECTRCNKTFLSQQNLTQHERTHNGIKEYICHQCGKAFTSSHNLEVHNIVHTGYKPYMCKICSKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAVHTGERPYKCDVCGATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITIPNNGELLMEEVENQQQLDETGLYVTELKDHVIIQQEGEDQIYNEEDVVLNIPAEEVVSAEVDHLVVENQIEFVKTETVENKPDINQVETVYAFNENDEGETIVVPASGENKNVRLVQIRFPTSVDEEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01408467;
90% Identity: iTF_01409385; iTF_01406727; iTF_01405947; iTF_01408467;
80% Identity: -