Basic Information

Insect: Temnothorax longispinosus
Gene Symbol: SCRT1
Assembly: GCA_004794745.1
Location: QBLH01001725.1:681169-687758[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5 3.9e+02 1.4 0.1 3 11 65 73 63 80 0.65

2 13 0.00042 0.032 14.2 0.2 1 23 231 253 231 253 0.94

3 13 1e-05 0.00078 19.3 1.2 1 23 261 283 261 283 0.98

4 13 1e-05 0.00079 19.3 0.5 2 23 291 312 290 312 0.96

5 13 5.4e-06 0.00042 20.2 1.3 1 23 318 340 318 340 0.99

6 13 5.3e-05 0.0041 17.0 2.7 1 23 347 369 347 369 0.98

7 13 1.3e-06 0.0001 22.1 1.7 1 23 375 397 375 397 0.95

8 13 7.6e-06 0.00059 19.7 0.4 1 23 403 425 403 425 0.98

9 13 4.2e-07 3.3e-05 23.7 1.2 1 23 431 454 431 454 0.96

10 13 3.1e-06 0.00024 20.9 0.4 1 23 460 483 460 483 0.96

11 13 1.1e-05 0.00084 19.2 2.5 1 23 489 511 489 511 0.99

12 13 5.4e-05 0.0042 17.0 0.4 1 23 517 539 517 539 0.94

13 13 0.00017 0.013 15.4 0.1 1 23 545 569 545 569 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5	3.9e+02	1.4	0.1	3	11	65	73	63	80	0.65
2	13	0.00042	0.032	14.2	0.2	1	23	231	253	231	253	0.94
3	13	1e-05	0.00078	19.3	1.2	1	23	261	283	261	283	0.98
4	13	1e-05	0.00079	19.3	0.5	2	23	291	312	290	312	0.96
5	13	5.4e-06	0.00042	20.2	1.3	1	23	318	340	318	340	0.99
6	13	5.3e-05	0.0041	17.0	2.7	1	23	347	369	347	369	0.98
7	13	1.3e-06	0.0001	22.1	1.7	1	23	375	397	375	397	0.95
8	13	7.6e-06	0.00059	19.7	0.4	1	23	403	425	403	425	0.98
9	13	4.2e-07	3.3e-05	23.7	1.2	1	23	431	454	431	454	0.96
10	13	3.1e-06	0.00024	20.9	0.4	1	23	460	483	460	483	0.96
11	13	1.1e-05	0.00084	19.2	2.5	1	23	489	511	489	511	0.99
12	13	5.4e-05	0.0042	17.0	0.4	1	23	517	539	517	539	0.94
13	13	0.00017	0.013	15.4	0.1	1	23	545	569	545	569	0.94

Sequence Information

Coding Sequence: ATGATGGCTGACTCCGATAAAGATTCCATACAATGCTTAGTGTGCGACAGTAAAATTGGAGTATCCACTCGAAACAGTATTCGCATCTTTGATGATTCCAGTTGCACTGCAAGTGAGAGATCACTGGTGGATGTTATATCAGCTGTTTTAGAAATCGATATCAATGAAGAATCTGCGCATTCCCACGtcatttgtaaaaaatgttttaagctGTTCAATGAGgTGGACGAACTTGAAAGTAAATTAACTGAAGTCAAAATGGAGTTATGTAACAATTATAAGAAGACAAttgaagttaaaaaattatgtgacaTACTTCAAAATGAAGAAGATTATAACGATCATGATTATACTGATAATACGGAAAGTCAACACACAATAGAGgaAGTGcaagaagaagataaagatTATGCACCAGAGGACGATACAGAGACACAAGAGGAGGGAGAACAAGAACTGCTTGTAGAATCAGAAGAATTCACGGTTGAAGAAGCGGACGAAACAAATAGTTCTGATGGCAAAAAGAAATCGAAGAAGAGCAAAGTTAAAGTACATCGCCCTCAGGAAAATATTGTATTTAAAGATGAATCTTCGTACACCTGCTGCTTGTGTCCAAACGACGAGGAGAGATTCACGGGAGATCCTAAAGTCATTGTAGTGCACATGAAAGAGGTGCACGATATTCGTTTGTATATTTGCGACGTATGTGGACAGGAttttagaaagagaaacgaaCTCTCCATGCATCTCGACGATCACGTCGCGAAGGAGGAAGGTGACTTTCAATGCGAGATatgtaatagaatatttagtaATCTGCGACTATTCCGAATTCATAAAAGGATACATTATCCCCAAGTGAAATCATGGTCCTGCGTGACGTGTGGGAAAAAATACAAttccaaaaatttattagaggAACATATGAACACACACACGGGTGTTCGCCCATACGTGTGCGAGACTTGTAACAAGGACTTCGCATCCAAGTATACGTATAAAGCACACGTAAAAACACATGAAGTACGACCTCGTCCATTCGAGTGCACTCGAtgtaataaaacgtttttaagCCAGCAAAATTTGACTCAACATGAACGGACGCATAATGGGATAAAGGAATATATATGCCATCAGTGTgggAAGGCTTTTACCTCATCTCACAATTTAGAGGTACATAACATAGTACATACCGGATATAAACCCTACATGTGCAAAATATGTAGCAAAGCGTTTGCACGTAAAGCAGAAATACGTGATCATGAGAGAACTCACACAGGTGAAAAACCTTATCAATGCGAGTTTTGTGGAGCAACATTTAGTCAGAGATCGAATCTACAATCCCATAAGCGGGCGACGCATTATAACGACAAACGTTACAAGTGTGAGGAGTGTGGAAAAGGTTTCAAAAGAAGAAGATTATTGGATTATCATATAAAAGCGGCGCATACTGGCGAAAGGCCGTATAAATGTGAAGTATGTACAGCTACGTTTGTCTATCCTGAGCATTTCAAGAAGCACAGACGTATACATACAGGCGAGAAACCATATCTTTGTGAGGTCTGTGGCAAAGCATTTAACAGCAGAGATAACAGAAACGCTCATAGATTTATACATAGCGATAAAAAACCGTATGAATGTTTAGTGTGTGGCATGGGCTTTATGAGAAAACCATTACTTTATGCACACATGCAAACTCAGgGTCACTTAAATGATACCATAGTAGTGAATCAACCGCGACTGACAACGGAAGACGATCAAGTAATAACTATTCCCAATAATAATGGCGAACTGTTGATGGAAGAAGTTGAGAATCAACAACagCTGGACGAAACTGGGTTATATGTGACCGAACTGAAAGATCATGTGATTATACAACAAGAAGGGGAAGATCAGATATATAATGAAGAGGATGTTGTGTTAAATATTCCGGCAGAAGAAGTTGTAAGCGCCGAAGTCGACCATCTTGTCGTCGaaaatcaaatGGAGTTTGTGAAAACtgaaattgtagaaaataaaccCGATATTAATCAAGTAGAAACGGTATACGCTTTTAACGAGAATGATGAAGGCGAGACGATAGTTGTACCAGCTTCAGGAGAGAACAAGAACGTGCGATTAGTGCAGATCAGATTTCCGACTTCTGTAGATGAAGAAGGCAGAAGCTGGTTGAGCTTAGTACAAaatacttga
Protein Sequence: MMADSDKDSIQCLVCDSKIGVSTRNSIRIFDDSSCTASERSLVDVISAVLEIDINEESAHSHVICKKCFKLFNEVDELESKLTEVKMELCNNYKKTIEVKKLCDILQNEEDYNDHDYTDNTESQHTIEEVQEEDKDYAPEDDTETQEEGEQELLVESEEFTVEEADETNSSDGKKKSKKSKVKVHRPQENIVFKDESSYTCCLCPNDEERFTGDPKVIVVHMKEVHDIRLYICDVCGQDFRKRNELSMHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWSCVTCGKKYNSKNLLEEHMNTHTGVRPYVCETCNKDFASKYTYKAHVKTHEVRPRPFECTRCNKTFLSQQNLTQHERTHNGIKEYICHQCGKAFTSSHNLEVHNIVHTGYKPYMCKICSKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCEECGKGFKRRRLLDYHIKAAHTGERPYKCEVCTATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITIPNNNGELLMEEVENQQQLDETGLYVTELKDHVIIQQEGEDQIYNEEDVVLNIPAEEVVSAEVDHLVVENQMEFVKTEIVENKPDINQVETVYAFNENDEGETIVVPASGENKNVRLVQIRFPTSVDEEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01408467;
90% Identity: iTF_01407574;
80% Identity: -