Basic Information

Insect: Temnothorax americanus
Gene Symbol: SCRT1
Assembly: GCA_030770215.1
Location: JASTWO010000023.1:572605-575988[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.9 1.2e+03 1.4 0.1 3 11 65 73 63 80 0.65

2 13 0.00066 0.1 14.2 0.2 1 23 231 253 231 253 0.94

3 13 1.6e-05 0.0025 19.3 1.2 1 23 261 283 261 283 0.98

4 13 1.5e-05 0.0023 19.4 0.3 2 23 291 312 290 312 0.96

5 13 8.6e-06 0.0013 20.2 1.3 1 23 318 340 318 340 0.99

6 13 8.5e-05 0.013 17.0 2.7 1 23 347 369 347 369 0.98

7 13 2.1e-06 0.00032 22.1 1.7 1 23 375 397 375 397 0.95

8 13 1.2e-05 0.0019 19.7 0.4 1 23 403 425 403 425 0.98

9 13 6.7e-07 0.0001 23.7 1.2 1 23 431 454 431 454 0.96

10 13 5.1e-06 0.00079 20.9 0.5 1 23 460 483 460 483 0.96

11 13 1.7e-05 0.0026 19.2 2.5 1 23 489 511 489 511 0.99

12 13 8.6e-05 0.013 17.0 0.4 1 23 517 539 517 539 0.94

13 13 0.00027 0.042 15.4 0.1 1 23 545 569 545 569 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.9	1.2e+03	1.4	0.1	3	11	65	73	63	80	0.65
2	13	0.00066	0.1	14.2	0.2	1	23	231	253	231	253	0.94
3	13	1.6e-05	0.0025	19.3	1.2	1	23	261	283	261	283	0.98
4	13	1.5e-05	0.0023	19.4	0.3	2	23	291	312	290	312	0.96
5	13	8.6e-06	0.0013	20.2	1.3	1	23	318	340	318	340	0.99
6	13	8.5e-05	0.013	17.0	2.7	1	23	347	369	347	369	0.98
7	13	2.1e-06	0.00032	22.1	1.7	1	23	375	397	375	397	0.95
8	13	1.2e-05	0.0019	19.7	0.4	1	23	403	425	403	425	0.98
9	13	6.7e-07	0.0001	23.7	1.2	1	23	431	454	431	454	0.96
10	13	5.1e-06	0.00079	20.9	0.5	1	23	460	483	460	483	0.96
11	13	1.7e-05	0.0026	19.2	2.5	1	23	489	511	489	511	0.99
12	13	8.6e-05	0.013	17.0	0.4	1	23	517	539	517	539	0.94
13	13	0.00027	0.042	15.4	0.1	1	23	545	569	545	569	0.94

Sequence Information

Coding Sequence: ATGATGGCTGGCTCCGATAAAGATTCCATACAATGCTTAGTGTGCGACAGTAAAATTGGAGTATCCACTCGAAACAGTATTCGCATCTTTGATGATTCCAGTTGCACTGCAAGTGAGAGATCACTGGTGGATGTTATATCAGCTGTTTTAGAAATTGATATCAATGAGGAATCTGCGCATTCCCACGtcatttgtaaaaaatgttttaagctGTTCAATGAGGTGGACGAACTTGAAAGTAAATTAACTGAAGTCAAAACGGAGTTACGTAACAATTATAAGAAGACAAttgaagttaaaaaattatgtgacATACTTCAAAATGAAGAAGATTGTAACGATCATGATTATACTGATAATACGGAAAGTCAACACACGATAGAGgaTGTGAAAGAAGAAGATATAGATTATGCACCAGAGGACGATGCAGAGACACAAGAGGAAGGAGAACGAGAACTGCTTGTAGAATCAGAAGAATTCACGGTTGAAGAAGCGGACGAAACAAATAGTTCTGATGGCAAAAAGAAATCGAAGAAGAGCAAAGTTAAAGTACTTCGCCCTCAGGAAAATATTGTATTTAAAGATGAATCTTCGTACACCTGCTACTTGTGTCCAAACGACGAGGAGAGATTCACGGGAGATGCTAAAGTCATTGTAGTGCACATGAAAGAGGTGCACGATATTCGTTTGTATATTTGCGACGTATGTGGACAGGATTTTAGAAAGAGAAACGAACTCTCCATGCATCTCGACGATCACGTCGCGAAGGAGGAAGGTGACTTTCAATGCGAGATATgtaatagaatatttagtaatcTGCGACTATTCCGAATTCATAAAAGGATACATTATCCCCAAGTGAAATCATGGCCCTGCGTGACATGTGGGAAAAAATACAAttccaaaaatttattagaggAACATATGAACACGCACACGGGTGTTCGCCCATACGTGTGCGAGACTTGTAACAAGGACTTCGCATCCAAGTATACGTATAAAGCACACGTAAAAACACATGAAGTACGACCTCGTCCATTCGAGTGCACTCGATGtaataaaacgtttttaaGCCAGCAAAATTTGACTCAACATGAACGGACGCATAATGGGATAAAGGAATATATATGCCATCAGTGTgggAAGGCTTTTACCTCATCTCACAATTTAGAGGTACATAACATAGTACATACCGGATATAAACCCTACATGTGCAAAATATGTAGCAAAGCGTTTGCACGTAAAGCGGAAATACGTGATCATGAGAGAACTCACACAGGTGAAAAACCTTATCAATGCGAGTTTTGTGGAGCAACATTTAGTCAGAGATCGAATCTACAATCCCATAAGCGGGCGACGCATTATAACGACAAACGTTACAAGTGTGACGAGTGTGGAAAAGGTTTCAAAAGAAGAAGATTGTTGGATTATCATATAAAAGCGGCGCATACTGGCGAAAGGCCGTATAAATGTGAAGTATGTACAGCTACGTTTGTCTATCCTGAGCATTTCAAGAAGCACAGACGTATACATACAGGCGAGAAACCATATCTTTGTGAGGTCTGTGGCAAAGCATTTAACAGCAGAGATAACAGAAACGCTCATAGATTTATACATAGCGATAAAAAACCGTATGAATGTTTAGTGTGTGGCATGGGCTTTATGAGAAAACCATTACTTTATGCACACATGCAAACTCAGgGTCACTTAAATGATACCATAGTAGTGAATCAACCGCGACTGACAACGGAAAACGAGCAAGTAATAACTATTCCCAATAATAATGGCGAACTGTTGATGGAAGAAGTTGAGAATCAACAACagCTGGACGAAACTGGGTTATATGTGACCGAACTGAAAGATCATGTGATTATACAACAAGAAGGGGAAGATCAGATATATAATGAAGAGGATGTTGTGTTAAATATTCCGGCAGAAGAAGTTGTAAGCGCCGAAGTCGACCATCTTGTCGTCGAAAatcaaaTAGAGTTTGTGAAAACTGAAACTGTAGAAAATAAACCCGATATTAATCAAGTAGAAACGGTATACGCTTTTAACGAGAATGACGAAGGCGAAACGATAGTTGTACCAGCTTCAGGAGAGACCAAGAACGTGCGATTAGTGCAGATCAGATTTCCGACTTCTGTAGATGAAGAAGGCAGAAGCTGGTTGAGCTTAGTACAAaatacttga
Protein Sequence: MMAGSDKDSIQCLVCDSKIGVSTRNSIRIFDDSSCTASERSLVDVISAVLEIDINEESAHSHVICKKCFKLFNEVDELESKLTEVKTELRNNYKKTIEVKKLCDILQNEEDCNDHDYTDNTESQHTIEDVKEEDIDYAPEDDAETQEEGERELLVESEEFTVEEADETNSSDGKKKSKKSKVKVLRPQENIVFKDESSYTCYLCPNDEERFTGDAKVIVVHMKEVHDIRLYICDVCGQDFRKRNELSMHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCVTCGKKYNSKNLLEEHMNTHTGVRPYVCETCNKDFASKYTYKAHVKTHEVRPRPFECTRCNKTFLSQQNLTQHERTHNGIKEYICHQCGKAFTSSHNLEVHNIVHTGYKPYMCKICSKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRRRLLDYHIKAAHTGERPYKCEVCTATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTENEQVITIPNNNGELLMEEVENQQQLDETGLYVTELKDHVIIQQEGEDQIYNEEDVVLNIPAEEVVSAEVDHLVVENQIEFVKTETVENKPDINQVETVYAFNENDEGETIVVPASGETKNVRLVQIRFPTSVDEEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01408467;
90% Identity: iTF_01407574;
80% Identity: -