Tlon012869.1
Basic Information
- Insect
- Temnothorax longispinosus
- Gene Symbol
- ZFX
- Assembly
- GCA_004794745.1
- Location
- QBLH01001363.1:14827-26409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3 99 3.3 0.1 3 23 15 35 14 35 0.94 2 15 2.4 1.9e+02 2.4 3.8 1 23 965 988 965 988 0.81 3 15 0.0001 0.0078 16.2 1.9 3 23 1077 1098 1075 1098 0.96 4 15 0.0032 0.25 11.4 0.2 2 23 1111 1132 1111 1132 0.98 5 15 1.4e-05 0.0011 18.9 2.3 2 23 1135 1156 1134 1156 0.97 6 15 0.0017 0.13 12.3 0.3 1 23 1162 1184 1162 1184 0.96 7 15 3.1e-05 0.0024 17.8 4.5 2 23 1191 1212 1190 1213 0.95 8 15 0.084 6.6 7.0 3.7 5 23 1226 1244 1225 1244 0.97 9 15 1.7e-05 0.0013 18.6 1.5 3 23 1251 1272 1250 1272 0.97 10 15 0.0078 0.61 10.2 0.3 2 23 1288 1308 1287 1308 0.97 11 15 5.2e-05 0.004 17.1 0.7 1 20 1314 1333 1314 1336 0.92 12 15 6.4e-05 0.005 16.8 2.7 1 23 1344 1366 1344 1366 0.99 13 15 0.0018 0.14 12.2 3.2 1 23 1372 1394 1372 1394 0.97 14 15 3.3e-06 0.00025 20.8 3.9 1 23 1400 1422 1400 1422 0.99 15 15 0.0011 0.088 12.9 6.3 1 23 1428 1450 1428 1451 0.96
Sequence Information
- Coding Sequence
- ATGGAGCTCAACGGTGCGGGTACGCCCGTCGGGGCCGTGGCCTGTCCCGTGTGCACCCTGTATTTGCGCGAGGGCATCAGTCTGCAGAAGCATCTGGATACTCACCCCAAGGAACAGGTTATAGAGGCTCTCATCAAAGCCAGCGCCTCCTCGTTACAGACCCAGCAGCACCAGCAGCATCAACAAGCTCTACCAGCGTCAGCAGCAACGTCATTACCATTATCGCTGCAGCCGCAGGCTGCGCTCCAGACCCCTACCTCCATCCAGGCGCCCCAAGCGTCCACCCAAGTATCGCATAACGCGCACATTTCCACTCACTCTCCGTATCCTGTAGGACCCATCTTCGAATGTCCGCCCATAAGCACCATGATGCCGCCGCAGTTCACCTCGTTCAGCTATCAGCAATTCGTGAACAATGGGACCATGATGATACCGCAGTACGCGATGGCGCCGCAAGCCAATCAGATGATGCAGATGCTGTATCCATACGGTATGTACCAACAGCAAATACCCACCGTCCAAATGATCTCACCAGTTGCAGCTATTCCCggggcgacgacggcgacgagggTCCGACCGGTGGTCACCGTGGCCGGGGAGAGCAACGTCAGAACCCTGACGGTTCCTGTAAATAGTCCCGAGCCGAAGCAGATCCTACCGGAGATACTGCCGGATACGGAGCCCGAGTCCGGGCAAGTTATACCGGACGTGACCCTCTCGGCCTCGCCTGTGCTGCAAAATGAGGATACATCCATCAGAGTGAGGGAGGAGAGCGACAGCGGTGCCCTGCCGATCGATCACCGAGGACAGCAGACGCAGGGTTCTGCGTCTCCCGGTGAAAGCGCGGCGCAGCACGAATACAATGCTATTCCTAGGTCTATTACAATTGCCTGCGCTATAGATGACACGGATGACAAGGTGGAGAGTGTATTGCCAGACATGGTGGACGAGGAGGAGCCATCGAACAACATTTTGACCACGGACTTGCAGTGTAAATCTGTGACGTACGAGCAATCGGAAACGCAACAGTTTACGCAACAAGTCGTCGACGAGGGATACGTGAGTGTATCCGGCAGAAAAATACCCAACGAGACGGTCGATATCGACTCCGTAGCTTCCGAGCGCGAATCGGAAGTGATGAGTGACGAAGGACCCGCGAGTCCCGCCAGCAACGTCAACGTCGGATCACCGCGGGATCTGATAGCGATAGACGCGTTGAAGGACTCTGTCCAACCTGAGCTTAACTCGGTGGAAAAATTGGAGAATTTGATAACCATAATGGAAACGGAGCTCAATAACACTGCGCTTCAGAAGGAAAGTGACGCGCCGAACGATCAGGAGAGACTGACGGACACGAAGGAGAAAACCGCTGCGGTGGATAGGGAGGAGACTGTGATTCACGACACGGTGGTCACGATGCCGGGCTCCCACGAGAAGGATCACATATTGCCCGACGTACGGGAGGAGAGCAAGTGGGACTCGAGCAATTACATACCCAACGAACTGAGAACGCTAGAGAAAACTTGTGACTCGTCGTACAGAGTAAACtgcatgaaaataaatgacgCGCTGGAAGGACTGGAGAGAACTTTTCGTTCGgataattataagtatagTTTTTCAGCGCCCGCGTCCCCAGTCGCGAGGAAGAAGAGCCGCAGAGTCGTGCGCCGCTACAGCTCGCGATCGGAGCATGGGTCGTGCGAAAATCTCAGCGTGTATCGCTACCGTGCCGCTTTCGACGACGCCGTAACGATgcacgaagacgacgacgacgaagacgacgacgacgacgacgatgacgaggacgacgaggacgTGGACGAGCTCGAGAAGATCGAGGAGGATAACTTCGACGAGGCGGACATGGAGATCGACGAGATTCCGAGTCCGCACACGCCTTTCGCGGACTGCGGCGTCAGATCGCACACGCCGCTGTCCACGATCAGCGGCATTTCCGTGTTAAGAGTTAGGAAAGATCTCAGCAAGCCGTGCTCACCCACGTCCATGCATTCGTTTCATCACGTGGACAGCGATAGCGTGACTCACGACGAGGACAGCAACGGCGTGGGTAACACCGCGGAGAAGGATCCAATCGACTGTTCGCAGGTGGACGAGGAGAAAATCAAGACTGATCATCAGCATCAGGAGACGCAGGCGGTGGCGGTGTGCGGAAGTATCGCCAAGGTTCAGGAGTCGAGCAGCAGTTACGCGTACCATCAATCAGTGATAACCGAGCACATCAGCTCGTTCCCCGTGATACACTCGCAGTCGTCCGTCTTGATGCACGAGTCGTATTCCATCACGACTAGCACCAAGACCAGCACGCAAAACCTCCTGAATCTCTCCGAATCGATAAATCCCACAACCAGCACCGAATCGAGAAGCTTTCACTCCGCCAAGTCGTTGACGCCGAAGCAATCGATGGAACTGCTCAACATAAATGAAGATGCTCACGCCGGGCCAATGAATGTCTTTGAATTCGACGGACTGCAAATATTAGTTCCTAGTTCGTTTATAAGTGACTCGTCCCAGAAAGCGGTGAGTGCGACCAGCCAGCAATCTATGGCGAGTAGCGAGGGTGCAATAGGTATCGACGAGGAGGTGAAGAGTATTAATATGCGTGCCGACGAGACCATGCCGCCTAGGGGTGAATTGTCGGAGCAAGAGAGTAATGGATGCACGGAGCAATCCGCATGGCAGTTGTACATGGGTCAAGAATCGTCACGTATGTCCACCTCTTACGATCTGTTGGCTCGAGAAAGCTGGGAAGAATCGGAGGGATCCGACAACGAGATCAGCGGGCCGTTGTTGGACAGCAGATCGTTGGCCACGCACTTTACTTCGAGCCTGTTTCTGGATCGGGACCGAAAGACACCGACTAAACGAACATTCAAGTGTTCCCACTGTAGCGAAGTGTTTGATTGCCCGAAAGAACGTAGAGTTCACAGCACAACGGTACACAAGGATGCGATGCCCAGTAGCAGTAGAGACCAGCTGGATCAGCCGGAGGTGAAGGACATCAAGTTGCTGGACAGTCGCATGAACATGTTCGACGACATATTCATGCCGAGTATACACATGCAGCAGCACATGTATCATCATCAGCAGCCGCTCCTGCACCAACTACAGCCACCGTCGCAGCCTGGATCGGACGGCCTGACGAAGGCCGAGGCCGACCAGAAGATCGGCGAGAATCTGGTGATACCGTCGAACATCGAGGTAATCTGCACAATATGCAATCAGCGATTTAACAGCGAGAAGTCCCTGCAGGCGCATCACCGGCGCATGCACATCGCCGACGTGAACAAACGCATACGCGAGACCGCCAAGTGCCAGATATGCAACGAGGAATTCCCGTCGGTGTTCCTGTACAACGCTCACCTGAAGATACACCCGTTAGAGTGCGGACAGTGCGGCAAGTATTTTTATCGCAAGCAAAACTTTAAGCTCCACATGAAACGTCACTTGGGCATCAAGCCGTTCCCGTGTACCGTGTGCGACAAGGCGTTCCTCACCAAGCAGAAGCTGGAGGAGCACACCAACGGCCACACCGGCAACGCGCCCGTCAGGTGTACTCTGTGTAACGAGACCTTCCGCAGATACTCGAATCTGACCCAGCACAAAAACAGGCATCACCTCAACATCAAGAAGAAGCTCAAGGACTACATATGCCACTGCGGCGAGGTGTTCCACACGAAGAAGAAGCTCGCCTGGCACAAGGAGACGCACGACGAGAAGCCTAAGGCGTGCACGTACTGCAACGAGCGATTTATCCACATGGCCAGTCTGACGCGTCACATGCGTCGCGCCCACAATCGCCGATTCGTTCCCGACGCTCAGCGCGAGAGCGAGAACGTCGAGTGTCCGATCTGCAAGTGCATCTACCTGCGATCGTCCCTGGCGGTGCATATGCGCGTGCACAACGGCGAGCGGCCGTACGAATGTCAGGTCTGCTCCAAGGCGTTCAGCACCAAGTGGAACCTGCAGCTGCACAAGTGGACGCACGCGGCGCGCAGCACCAAGCCTTTCAAGTGCAACCAGTGCAGCGCGGCGTTCTACCGTCACAGCGATTACACGGCCCACATGAATTCCCATCGGAACGTACGGCCGTACACGTGCAACTACTGCGGCGCGCAGTTCATCCGCAAGTACAACTGCCTGCGGCACGTGAAGGAACACGAGGAGAACAAGGCGTACACGTGCGACGTGTGCAACAAGACCTTCCACCGCTCGTACTATCTCAAGGAGCATCTGCGGGTGCATTCGGGCGCGCGTCCGTACACGTGTCACATCTGCGGCAAGTCCAGCGGCACGAAGTCCAATCACAACAAGCACGTGCGAATTCATCACGCGCGCGAGCCTGTAAATACCGAAAATTGA
- Protein Sequence
- MELNGAGTPVGAVACPVCTLYLREGISLQKHLDTHPKEQVIEALIKASASSLQTQQHQQHQQALPASAATSLPLSLQPQAALQTPTSIQAPQASTQVSHNAHISTHSPYPVGPIFECPPISTMMPPQFTSFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYPYGMYQQQIPTVQMISPVAAIPGATTATRVRPVVTVAGESNVRTLTVPVNSPEPKQILPEILPDTEPESGQVIPDVTLSASPVLQNEDTSIRVREESDSGALPIDHRGQQTQGSASPGESAAQHEYNAIPRSITIACAIDDTDDKVESVLPDMVDEEEPSNNILTTDLQCKSVTYEQSETQQFTQQVVDEGYVSVSGRKIPNETVDIDSVASERESEVMSDEGPASPASNVNVGSPRDLIAIDALKDSVQPELNSVEKLENLITIMETELNNTALQKESDAPNDQERLTDTKEKTAAVDREETVIHDTVVTMPGSHEKDHILPDVREESKWDSSNYIPNELRTLEKTCDSSYRVNCMKINDALEGLERTFRSDNYKYSFSAPASPVARKKSRRVVRRYSSRSEHGSCENLSVYRYRAAFDDAVTMHEDDDDEDDDDDDDDEDDEDVDELEKIEEDNFDEADMEIDEIPSPHTPFADCGVRSHTPLSTISGISVLRVRKDLSKPCSPTSMHSFHHVDSDSVTHDEDSNGVGNTAEKDPIDCSQVDEEKIKTDHQHQETQAVAVCGSIAKVQESSSSYAYHQSVITEHISSFPVIHSQSSVLMHESYSITTSTKTSTQNLLNLSESINPTTSTESRSFHSAKSLTPKQSMELLNINEDAHAGPMNVFEFDGLQILVPSSFISDSSQKAVSATSQQSMASSEGAIGIDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYMGQESSRMSTSYDLLARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCSHCSEVFDCPKERRVHSTTVHKDAMPSSSRDQLDQPEVKDIKLLDSRMNMFDDIFMPSIHMQQHMYHHQQPLLHQLQPPSQPGSDGLTKAEADQKIGENLVIPSNIEVICTICNQRFNSEKSLQAHHRRMHIADVNKRIRETAKCQICNEEFPSVFLYNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLEEHTNGHTGNAPVRCTLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01523563;
- 90% Identity
- iTF_00128452;
- 80% Identity
- -