Basic Information

Insect: Temnothorax americanus
Gene Symbol: -
Assembly: GCA_030770215.1
Location: JASTWO010000134.1:43799-51505[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00011 0.016 16.7 0.2 2 23 740 761 739 761 0.97

2 17 0.86 1.3e+02 4.4 2.8 1 19 767 785 767 786 0.91

3 17 5 7.7e+02 2.0 0.6 2 23 794 815 793 815 0.94

4 17 8.1e-05 0.012 17.1 1.4 3 23 824 845 823 845 0.98

5 17 0.005 0.78 11.5 1.2 1 23 852 875 852 875 0.95

6 17 0.00011 0.016 16.7 0.7 1 23 881 904 881 904 0.94

7 17 5.1 7.9e+02 2.0 1.5 3 23 913 932 912 932 0.86

8 17 1.6e-07 2.4e-05 25.6 2.1 2 23 938 959 937 959 0.97

9 17 2.5e-06 0.00039 21.8 0.2 1 23 965 987 965 987 0.99

10 17 0.00063 0.097 14.3 2.4 2 23 999 1021 998 1021 0.95

11 17 0.0089 1.4 10.7 2.5 1 23 1027 1050 1027 1050 0.96

12 17 0.032 5 8.9 2.8 2 23 1071 1093 1070 1093 0.94

13 17 0.0094 1.5 10.6 0.6 2 23 1100 1122 1099 1122 0.96

14 17 6.4e-05 0.0099 17.4 1.0 3 23 1131 1151 1129 1151 0.96

15 17 0.0024 0.38 12.4 2.3 1 23 1157 1180 1157 1180 0.96

16 17 0.37 57 5.6 3.2 2 23 1187 1208 1186 1208 0.96

17 17 0.011 1.7 10.4 2.6 1 23 1214 1236 1214 1236 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00011	0.016	16.7	0.2	2	23	740	761	739	761	0.97
2	17	0.86	1.3e+02	4.4	2.8	1	19	767	785	767	786	0.91
3	17	5	7.7e+02	2.0	0.6	2	23	794	815	793	815	0.94
4	17	8.1e-05	0.012	17.1	1.4	3	23	824	845	823	845	0.98
5	17	0.005	0.78	11.5	1.2	1	23	852	875	852	875	0.95
6	17	0.00011	0.016	16.7	0.7	1	23	881	904	881	904	0.94
7	17	5.1	7.9e+02	2.0	1.5	3	23	913	932	912	932	0.86
8	17	1.6e-07	2.4e-05	25.6	2.1	2	23	938	959	937	959	0.97
9	17	2.5e-06	0.00039	21.8	0.2	1	23	965	987	965	987	0.99
10	17	0.00063	0.097	14.3	2.4	2	23	999	1021	998	1021	0.95
11	17	0.0089	1.4	10.7	2.5	1	23	1027	1050	1027	1050	0.96
12	17	0.032	5	8.9	2.8	2	23	1071	1093	1070	1093	0.94
13	17	0.0094	1.5	10.6	0.6	2	23	1100	1122	1099	1122	0.96
14	17	6.4e-05	0.0099	17.4	1.0	3	23	1131	1151	1129	1151	0.96
15	17	0.0024	0.38	12.4	2.3	1	23	1157	1180	1157	1180	0.96
16	17	0.37	57	5.6	3.2	2	23	1187	1208	1186	1208	0.96
17	17	0.011	1.7	10.4	2.6	1	23	1214	1236	1214	1236	0.98

Sequence Information

Coding Sequence: ATGCCGAATCCCGAAATCAATAAACGCGATCACAATTACAGTGAATCGAAACCTCAACGTGCCAACAATGGTAATGGTGGCGCTATCTGCAAGATATCCAAGATAGGATCTATCGGGGGTCAGATTAGAGACATCAACGAACTGAAGAAGATTGCGCCGCGCGTTCGTCTACAGGACACTGAAAGTTTGAACGAGTTGACGAGGATCTCTTCTTTAAGTAACAGTAACGTACAGCAGAACGATACATCCGTTCTTGAGAGAACGCGGCAAGAACTGAGAAAATACTGCCGCACCTGCGCTGGCTTAAAACTGCCCTtgGTGGACATCTTTAGTGAAAAGGGCATTAAATTGCGATTGAGTCAGCAAATCAAGCATCTCGAAGTGAATCCTTATGATAGTCTCTCGACACAGATGTGCATGGACTGTATCTGCGATCTTAGAAtgagttataaatttttcatgcAGATAAAAAAAGCtgagataaaattgaaatctaTCCATGTCAATCTCACGACTGATACGGCCACGAAGAAAGTAACGTTGATCGACGAGTCTTCGACGATAAAAGAGGAGATGCAATCATCTTGTATAGAAACAAAGCAGGAATATCAATTATCCTCTACAATCCAACAAAACCTATCTTCCGTGTTATCGAAGCAAGAAAACCAAACGACTCCCGGAAATCAAGCGGATGACTCTGTTCCAAAAATTTGTGCCATCTTTTCGTTGAAGGACGAATCGAAGGTAAAATCTGGAAAGGAGAAGGAAGACACGGACgatgaggaggaggaggaggaggaggaggaggaggaggaagaggtaCAGATAGGCGGAGGGATATTTGAGGAAGTGGCAGAGGGAGAGGATGAAGAATCTATCGAGGAATTTGATCCTGAAGACCCTGCACTCCTGgaagatgaagaagaagaagaagaagagaaaaaatctCCAAGATCCCCAACAACCGTCTATAAGTACGATATGGCAGCAAAGTCTTACGTGAGGTTGGAAAGAAGTGAAGAGGGAGTTTCCGTGAACGCTGGAGCTTCCCAGACTTTGGAAGGTGACGGAGAAAATCAAAGAGAGGGAATAAGCAAGCCAAATATCTtgaagagaaaattaataatgccaACGGTAACGACGAAGAATGGTGGGGAGGAGGACGAGGTACAAAGTATAGTCGAGGAGCGCAAAGTGCAAAAGTTAGACACAAACAGTCTCTCGAATGTGAATAGTCCTCTAGAAGAGGATGGAATTATGTACGTAACTGTAAAGGGCTCTAAACCGAACGAGTTTCTTCTGGTGAAGGTGAAGAAAGTGGACAAACCCATGGAATCAAAGCGCGCGGTAATCTCTACTGATCTTAAGCCTGTCGAACGTCTCCTCAAACGTTATGAAACGTTGGCATCGAAAGATTTCTCATCTCGACGTCCTGACGGCCGCGAGCAAATAATTGAAGAACAAATCgaagaatataaaaagaaacgagaaaaGGTTCTTGGAGGTCAGTCGGTAGTGACGTTCACCGTGAACGAAACGCAAAAAGAAGTACAGCAGGAAGAACGTTCCCCCAAGTCAACGTTTGTAAAGGCAGAAGAACGGACACTTTTGACAAAAGTGGAAGCTGGAGTGAAGGAGGAGCGGGAGCAATAccaagaggaggaggaggagcaGGAGGAGCAGCAgcaggaggaggaagaggaggacgaggaggaCGAGGCGGACGAGGAGGATGAGGcggacgaggaggaggaggagaagaaagaagagggGAATGGAGATGGGAATGGGGCGGGGGATGGAGATGGAgataaagaagagaaagagttTTGGATTAAGATGGAAAATATTGACGAAAGTCAAGAAAAGGTCCATGAATATACAGAGGAATATCTTTCAAAGTTATCAAGATTGAAATTAAAGTGGGAAGAGACGAAACGGAAAAAGGAAAGTTTACAGAAGGAACTGAACGAGTCGTATAGCGAAGGGAACTTGGAGAAATTGGCAAAAGTCTTGggggaaaaggaaaagaatcTGCAGGAATTCCAAGAGTACTTGAAGCAGCGTAAAATCGTTCTTACTCGCCTCAAGGACGAAGACATACGCTCTCTCTATGAAGATCGATTCTCCGCTACTTTAAAATCGTCCTCTAACGTGCTCCCAGACCTTATCGACACTCAACCTCCCGTCGACCCGCTTTCCGAAGAGCGCTATTTAGAATGTGATTATTGTTCCGAAACCTTCTCCAACCGCGATGTTCTCGAGGAACATCTCAAGTCCCACGACTACCGTATCCTTCATTGCTGCGACGACTGTGGGGAAGAATTTCAAACCAATAAAGCGAAAAGAAATCATAATGTGATATGTGTGAGgaaattaatttgcaaattttgcgACATAATTCTGGATTCCAGAGGGAAAAAACGTCAACACGAGCAGAAACACGTTGACGCTCTTTATGGTCAACTTTGCGAGATTTGTGGCGAGAGATTCAAACACCAAGGAACTCTGGACCAGCACCTGAAGACGCAACATACGAGTTTGGAAAAGATTTATCCGTGTCCAAAGTGTCCgaaaaaatttgcttttaaacaaaaactgAGCTTTCACTTAAAATCTGTTCATACAACTTTGAGAGCGTACCTTTGTGAGGATTGCGGTGCGGATTTTAAGAATCCTGCGAGCTTGAGACATCATAGAATCAGAAAACATCAACCGGTTGGAAATAAAAGGGAATGTCAAGTTTGCAGCAAATTGGTGCCGTTTTACAGTTTGTCCAAGCACATGCACACGCATAAAGCTTACAGTATCCAATGTCCACATTGCGAcaaaatgttcaaaaataGCTCGACCTTGAAGCAACATGTGAGAATTCACGAAGATCAAAGGCAGTATCGTTGTGACACCTGCGGCGTTGGATTTAATCGGAGAGACGGTTTGAGGCTGCATATGAGAGTGCACGAAAAAACTGGTAGTAGAGGCTTGAAAGAGTGTTCCTGCCAAGTATGTGGCGAAAAGTTTCCGAATCATTCGACTTTGGTGATTCATAGGAACAGAGTGCACAAAGATGGGAGGCAGTATACGTGTCACATTTGTAACAGGTCAATGATTTCGACGAGATCGCTCGAGTGGCACATGTCGCACATTCATAACGAGTCGATGCCAGGTATTATCCGCGACGCGTCTGGTCTGCCTGAAAAAAAACGGGTTTCCTGCTATCACTGCAATAAGACCTTCAAGACGGAACTAATTCTTCGcacacatattaaaaatacgcaCATGGAGAAGGACCCGTTGAAGTGCACCGACTGCGAGGATATTTTCACATCTGAAGTACGTTTACGTCATCACATGATGGTCGTGCACAATCGTCTCGAGGGTACTTTGGCATGCCCTCATTGTCCGAAACGATTCGTGAACCAATTAAGGCTAAAGACTCACATGATTTCTCATTCTGAGGAAAGGCCGTATACCTGCGAGGTCTGCGGTTTCAACCTGAAGACAAAGATCCAGCTGATCAAGCATCATCAAAACCGACACAGTGACGAGAGACCTTTGCAGTGCAGGTACTGTCCTTGGCGATGCAAGCAAGTGAGTGCCCTCGTTTGTCACGAACGCACGCATACCAATGAACGCCCATATTCGTGCAGCGTATGCCGGCAACGCTTCAAATATCTCGGTGACAAAAACAAGCATGAACGTCGTCACGAGAGCCTCGGTGGTTCAGGCTTCAAGCGTATCGTACCCGGAAGAAATGTCAAACCGAAAGTACGCGCCGCCGACGATTCCTCCGGATCTGAGCAGGAACCGGGCTCGCTCAAGGCGTCGGCGAAGGAGCACGACGAGGAACAGCAGGAAGGACAATACGATCAAAAATTTTCGGAGGAACAGATGGTCAAATTCGAACGGGAGCAGATTGTCAAGTTTGAAGGTCAAGAGGAATACGAACAAGCGGTGTACGAGCAGGAGTATGAAGAAACTTCGAGAGAAGCATCGGAAGCTACCGAAGTAATTATGAACATGGAGGATTCCACGGTGTACACGGAGGAGGTTACGGCTGATAATATAGAGCCTAGCGTAGAGATCATGACGGACGAGATAATGACGAGTGACATTCTACAATCTGGCACTGCTGTGATGCATCTGCAAGGTTGCACGACGTCCTCGGGGGAGATTCAAGTGATACCAGTGATGCTGTCCCTGCCCGAGCTATCCGACGCAACCACTGAAGTAAATCTCGCGACCGCGTCAATCATGTATAATACGTAG
Protein Sequence: MPNPEINKRDHNYSESKPQRANNGNGGAICKISKIGSIGGQIRDINELKKIAPRVRLQDTESLNELTRISSLSNSNVQQNDTSVLERTRQELRKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDSLSTQMCMDCICDLRMSYKFFMQIKKAEIKLKSIHVNLTTDTATKKVTLIDESSTIKEEMQSSCIETKQEYQLSSTIQQNLSSVLSKQENQTTPGNQADDSVPKICAIFSLKDESKVKSGKEKEDTDDEEEEEEEEEEEEEVQIGGGIFEEVAEGEDEESIEEFDPEDPALLEDEEEEEEEKKSPRSPTTVYKYDMAAKSYVRLERSEEGVSVNAGASQTLEGDGENQREGISKPNILKRKLIMPTVTTKNGGEEDEVQSIVEERKVQKLDTNSLSNVNSPLEEDGIMYVTVKGSKPNEFLLVKVKKVDKPMESKRAVISTDLKPVERLLKRYETLASKDFSSRRPDGREQIIEEQIEEYKKKREKVLGGQSVVTFTVNETQKEVQQEERSPKSTFVKAEERTLLTKVEAGVKEEREQYQEEEEEQEEQQQEEEEEDEEDEADEEDEADEEEEEKKEEGNGDGNGAGDGDGDKEEKEFWIKMENIDESQEKVHEYTEEYLSKLSRLKLKWEETKRKKESLQKELNESYSEGNLEKLAKVLGEKEKNLQEFQEYLKQRKIVLTRLKDEDIRSLYEDRFSATLKSSSNVLPDLIDTQPPVDPLSEERYLECDYCSETFSNRDVLEEHLKSHDYRILHCCDDCGEEFQTNKAKRNHNVICVRKLICKFCDIILDSRGKKRQHEQKHVDALYGQLCEICGERFKHQGTLDQHLKTQHTSLEKIYPCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECQVCSKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESMPGIIRDASGLPEKKRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCTDCEDIFTSEVRLRHHMMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEVCGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNVKPKVRAADDSSGSEQEPGSLKASAKEHDEEQQEGQYDQKFSEEQMVKFEREQIVKFEGQEEYEQAVYEQEYEETSREASEATEVIMNMEDSTVYTEEVTADNIEPSVEIMTDEIMTSDILQSGTAVMHLQGCTTSSGEIQVIPVMLSLPELSDATTEVNLATASIMYNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423842;
90% Identity: iTF_01407605;
80% Identity: -