Basic Information

Insect: Temnothorax americanus
Gene Symbol: -
Assembly: GCA_030770215.1
Location: JASTWO010000621.1:71063-77592[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 8.4e-05 0.013 17.0 0.2 2 23 479 500 478 500 0.97

2 17 0.69 1.1e+02 4.7 2.8 1 19 506 524 506 525 0.91

3 17 4 6.1e+02 2.3 0.6 2 23 533 554 532 554 0.94

4 17 6.5e-05 0.01 17.4 1.4 3 23 563 584 562 584 0.98

5 17 0.004 0.62 11.8 1.2 1 23 591 614 591 614 0.95

6 17 8.5e-05 0.013 17.0 0.7 1 23 620 643 620 643 0.94

7 17 4.1 6.3e+02 2.3 1.5 3 23 652 671 651 671 0.86

8 17 1.3e-07 1.9e-05 25.9 2.1 2 23 677 698 676 698 0.97

9 17 2e-06 0.00031 22.1 0.2 1 23 704 726 704 726 0.99

10 17 0.0005 0.077 14.6 2.4 2 23 738 760 737 760 0.95

11 17 0.0071 1.1 11.0 2.5 1 23 766 789 766 789 0.96

12 17 0.026 4 9.2 2.8 2 23 810 832 809 832 0.94

13 17 0.0075 1.2 10.9 0.6 2 23 839 861 838 861 0.96

14 17 5.1e-05 0.0079 17.7 1.0 3 23 870 890 868 890 0.96

15 17 0.002 0.3 12.8 2.3 1 23 896 919 896 919 0.96

16 17 0.29 45 5.9 3.2 2 23 926 947 925 947 0.96

17 17 0.0086 1.3 10.7 2.6 1 23 953 975 953 975 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	8.4e-05	0.013	17.0	0.2	2	23	479	500	478	500	0.97
2	17	0.69	1.1e+02	4.7	2.8	1	19	506	524	506	525	0.91
3	17	4	6.1e+02	2.3	0.6	2	23	533	554	532	554	0.94
4	17	6.5e-05	0.01	17.4	1.4	3	23	563	584	562	584	0.98
5	17	0.004	0.62	11.8	1.2	1	23	591	614	591	614	0.95
6	17	8.5e-05	0.013	17.0	0.7	1	23	620	643	620	643	0.94
7	17	4.1	6.3e+02	2.3	1.5	3	23	652	671	651	671	0.86
8	17	1.3e-07	1.9e-05	25.9	2.1	2	23	677	698	676	698	0.97
9	17	2e-06	0.00031	22.1	0.2	1	23	704	726	704	726	0.99
10	17	0.0005	0.077	14.6	2.4	2	23	738	760	737	760	0.95
11	17	0.0071	1.1	11.0	2.5	1	23	766	789	766	789	0.96
12	17	0.026	4	9.2	2.8	2	23	810	832	809	832	0.94
13	17	0.0075	1.2	10.9	0.6	2	23	839	861	838	861	0.96
14	17	5.1e-05	0.0079	17.7	1.0	3	23	870	890	868	890	0.96
15	17	0.002	0.3	12.8	2.3	1	23	896	919	896	919	0.96
16	17	0.29	45	5.9	3.2	2	23	926	947	925	947	0.96
17	17	0.0086	1.3	10.7	2.6	1	23	953	975	953	975	0.98

Sequence Information

Coding Sequence: ATGCAATCATCTTGTATAGAAACAAAGCAGGAATATCAATTATCCTCTACAATCCAACAAAACCTATCTTCCGACGAATCGAAGGTAAAATCTGGAAAGGAGAAGGAAGACACGGACgatgaggaggaggaggaggaggaggaggaagaggtaCAGATAGGCGGAGGGATATTTGAGGAAGTGGCAGAGGGAGAGGATGAAGAATCTATCGAGGAATTTGATCCTGAAGACCCTGCACTCCTGgaagatgaagaagaagaagaagaagagaaaaaatctCCAAGATCCCCAACAACCGTCTATAAGTACGATATGGCAGCAAAGTCTTACGTGAGGTTGGAAAGAAGTGAAGAGGGAGTTTCCGTGAACGCTGGAGCTTCCCAGACTTTGGAAGGTGACGGAGAAAATCAAAGAGAGGGAATAAGCAAGCCAAATATCTtgaagagaaaattaataatgccaACGGTAACGACGAAGAATGGTGGGGAGGAGGACGAGGTACAAAGTATAGTCGAGGAGCGCAAAGTGCAAAAGTTAGACACAAACAGTCTCTCGAATGTGAATAGTCCTCTAGAAGAGGATGGAATTATGTACGTAACTGTAAAGGGCTCTAAACCGAACGAGTTTCTTCTGGTGAAGGTGAAGAAAGTGGACAAACCCATGGAATCAAAGCGCGCGGTAATCTCTACTGATCTTAAGCCTGTCGAACGTCTCCTCAAACGTTATGAAACGTTGGCATCGAAAGATTTCTCATCTCGACGTCCTGACGGCCGCGAGCAAATAATTGAAGAACAAATCgaagaatataaaaagaaacgagaaaaGGTTCTTGGAGGTCAGTCGGTAGTGACGTTCACCGTGAACGAAACGCAAAAAGAAGTACAGCAGGAAGAACGTTCCCCCAAGTCAACGTTTGTAAAGGCAGAAGAACGGACACTTTTGACAAAAGTGGAAGCTGGAGTGAAGGAGGAGCGGGAGCAATAccaagaggaggaggaggagcaGGAGGAGCAGCAgcaggaggaggaagaggaggacgaggaggaCGAGGCGGACGAGGAGGATGAGGcggacgaggaggaggaggagaagaaagaagagggGAATGGAGATGGGAATGGGGCGGGGGATGGAGATGGAgataaagaagagaaagagttTTGGATTAAGATGGAAAATATTGACGAAAGTCAAGAAAAGCGAAGGGAACTTGGAGAAATTGGCAAAAGTCTTggggaaaaggaaaagaatcTGCAGGAATTCCAAGAGTACTTGAAGCAGCGTAAAATCGTTCTTACTCGCCTCAAGGACGAAGACATACGCTCTCTCTATGAAGATCGATTCTCCACTACTTTAAAATCGTCCTCTAACGTGCTCCCAGACCTTATCGACACTCAACCTCCCGTCGACCCGCTTTCCGAAGAGCGCTATTTAGAATGTGATTATTGTTCCGAAACCTTCTCCAACCGCGATGTTCTCGAGGAACATCTCAAGTCCCACGACTACCGTATCCTTCATTGCTGCGACGACTGTGGGGAAGAATTTCAAACCAATAAAGCGAAAAGAAATCATAATGTGATATGTGTGAGgaaattaatttgcaaattttgcgACATAATTCTGGATTCCAGAGGGAAAAAACGTCAACACGAGCAGAAACACGTTGACGCTCTTTATGGTCAACTTTGCGAGATTTGTGGCGAGAGATTCAAACACCAAGGAACTCTGGACCAGCACCTGAAGACGCAACATACGAGTTTGGAAAAGATTTATCCGTGTCCAAAGTGTCCgaaaaaatttgcttttaaacaaaaactgAGCTTTCACTTAAAATCTGTTCATACAACTTTGAGAGCGTACCTTTGTGAGGATTGCGGTGCGGATTTTAAGAATCCTGCGAGCTTGAGACATCATAGAATCAGAAAACATCAACCGGTTGGAAATAAAAGGGAATGTCAAGTTTGCAGCAAATTGGTGCCGTTTTACAGTTTGTCCAAGCACATGCACACGCATAAAGCTTACAGTATCCAGTGTCCACATTGCGAcaaaatgttcaaaaataGCTCGACCTTGAAGCAACATGTGAGAATTCACGAAGATCAAAGGCAGTATCGTTGTGACACCTGCGGCGTTGGATTTAATCGGAGAGACGGTTTGAGGCTGCATATGAGAGTGCACGAAAAAACTGGTAGTAGAGGCTTGAAAGAGTGTTCCTGCCAAGTATGTGGCGAAAAGTTTCCGAATCATTCGACTTTGGTGATTCATAGGAACAGAGTGCACAAAGATGGGAGGCAGTATACGTGTCACATTTGTAACAGGTCAATGATTTCGACGAGATCGCTCGAGTGGCACATGTCGCACATTCATAACGAGTCGATGCCAGGTATTATCCGCGACGCGTCTGGTCTGCCTGAAAAAAAACGGGTTTCCTGCTATCACTGCAATAAGACCTTCAAGACGGAACTAATTCTTCGcacacatattaaaaatacgcaCATGGAGAAGGACCCGTTGAAGTGCACCGACTGCGAGGATATTTTCACATCTGAAGTACGTTTACGTCATCACATGATGGTCGTGCACAATCGTCTCGAGGGTACTTTGGCATGCCCTCATTGTCCGAAACGATTCGTGAACCAATTAAGGCTAAAGACTCACATGATTTCTCATTCTGAGGAAAGGCCGTATACCTGCGAGGTCTGCGGTTTCAACCTGAAGACAAAGATCCAGCTGATCAAGCATCATCAAAACCGACACAGTGACGAGAGACCTTTGCAGTGCAGGTACTGTCCTTGGCGATGCAAGCAAGTGAGTGCCCTCGTTTGTCACGAACGCACGCATACCAATGAACGCCCATATTCGTGCAGCGTATGCCGGCAACGCTTCAAATATCTCGGTGACAAAAACAAGCATGAACGTCGTCACGAGAGCCTCGGTGGTTCAGGCTTCAAGCGTATCGTACCCGGAAGAAATGTCAAACCGAAAGTACGCGCCGCCGACGATTCCTCCGGATCTGAGCAGGAACCGGGCTCGCTCAAGGCGTCGGCGAAGGAGCACGACGAGGAACAGCAGGAAGGACAATACGATCAGAAATTTTCGGAGGAACAGATGGTCAAATTCGAACGGGAGCAGATTGTCAAGTTTGAAGGTCAAGAGGAATACGAACAAGCGGTGTACGAGCAGGAGTATGAAGAAACTTCGAGAGAAGCATCGGAAGCTACCGAAGTAATTATGAACATGGAGGATTCCACGGTGTACACGGAGGAGGTTACGGCTGATAATATAGAGCCTAGCGTAGAGATCATGACGGACGAGATAATGACGAGTGACATTCTACAATCTGGCACTGCTGTGATGCATCTGCAAGGTTGCACGACGTCCTCGGGGGAGATTCAAGTGATACCAGTGATGCTGTCCCTGCCCGAGCTATCCGACGCAACCACTGAAGTAAATCTCGCGACCGCGTCAatcatgtataataattag
Protein Sequence: MQSSCIETKQEYQLSSTIQQNLSSDESKVKSGKEKEDTDDEEEEEEEEEEVQIGGGIFEEVAEGEDEESIEEFDPEDPALLEDEEEEEEEKKSPRSPTTVYKYDMAAKSYVRLERSEEGVSVNAGASQTLEGDGENQREGISKPNILKRKLIMPTVTTKNGGEEDEVQSIVEERKVQKLDTNSLSNVNSPLEEDGIMYVTVKGSKPNEFLLVKVKKVDKPMESKRAVISTDLKPVERLLKRYETLASKDFSSRRPDGREQIIEEQIEEYKKKREKVLGGQSVVTFTVNETQKEVQQEERSPKSTFVKAEERTLLTKVEAGVKEEREQYQEEEEEQEEQQQEEEEEDEEDEADEEDEADEEEEEKKEEGNGDGNGAGDGDGDKEEKEFWIKMENIDESQEKRRELGEIGKSLGEKEKNLQEFQEYLKQRKIVLTRLKDEDIRSLYEDRFSTTLKSSSNVLPDLIDTQPPVDPLSEERYLECDYCSETFSNRDVLEEHLKSHDYRILHCCDDCGEEFQTNKAKRNHNVICVRKLICKFCDIILDSRGKKRQHEQKHVDALYGQLCEICGERFKHQGTLDQHLKTQHTSLEKIYPCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECQVCSKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESMPGIIRDASGLPEKKRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCTDCEDIFTSEVRLRHHMMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEVCGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNVKPKVRAADDSSGSEQEPGSLKASAKEHDEEQQEGQYDQKFSEEQMVKFEREQIVKFEGQEEYEQAVYEQEYEETSREASEATEVIMNMEDSTVYTEEVTADNIEPSVEIMTDEIMTSDILQSGTAVMHLQGCTTSSGEIQVIPVMLSLPELSDATTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423842;
90% Identity: iTF_01407605;
80% Identity: -