Basic Information

Insect: Temnothorax americanus
Gene Symbol: -
Assembly: GCA_030770215.1
Location: JASTWO010000003.1:200637-206223[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.3 1.9e+02 3.9 9.7 2 23 392 414 391 414 0.97

2 18 0.0042 0.65 11.7 1.6 1 23 462 484 462 484 0.98

3 18 0.39 60 5.5 0.6 1 23 533 555 533 555 0.97

4 18 0.046 7.1 8.4 0.2 1 21 603 623 603 624 0.92

5 18 0.0085 1.3 10.7 2.9 1 23 664 686 664 686 0.98

6 18 0.00013 0.02 16.5 0.3 1 23 735 757 735 757 0.98

7 18 0.0009 0.14 13.8 0.1 1 23 763 785 763 785 0.97

8 18 1.9e-05 0.0029 19.1 0.2 1 23 829 852 829 852 0.96

9 18 0.001 0.16 13.6 0.9 1 23 858 881 858 881 0.96

10 18 6.7e-06 0.001 20.5 1.0 2 23 889 911 888 911 0.97

11 18 0.00033 0.05 15.2 0.0 1 23 919 941 919 941 0.92

12 18 0.096 15 7.4 0.3 1 20 1000 1019 1000 1019 0.97

13 18 0.0023 0.35 12.5 0.1 2 23 1039 1060 1038 1060 0.96

14 18 1.6e-05 0.0024 19.3 1.2 1 23 1073 1095 1073 1095 0.98

15 18 0.0003 0.046 15.3 3.0 1 23 1117 1140 1117 1140 0.93

16 18 0.14 21 6.9 2.0 2 23 1201 1223 1200 1223 0.95

17 18 0.00078 0.12 14.0 1.0 1 23 1245 1268 1245 1268 0.93

18 18 0.0038 0.59 11.8 0.2 2 23 1363 1385 1363 1385 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.3	1.9e+02	3.9	9.7	2	23	392	414	391	414	0.97
2	18	0.0042	0.65	11.7	1.6	1	23	462	484	462	484	0.98
3	18	0.39	60	5.5	0.6	1	23	533	555	533	555	0.97
4	18	0.046	7.1	8.4	0.2	1	21	603	623	603	624	0.92
5	18	0.0085	1.3	10.7	2.9	1	23	664	686	664	686	0.98
6	18	0.00013	0.02	16.5	0.3	1	23	735	757	735	757	0.98
7	18	0.0009	0.14	13.8	0.1	1	23	763	785	763	785	0.97
8	18	1.9e-05	0.0029	19.1	0.2	1	23	829	852	829	852	0.96
9	18	0.001	0.16	13.6	0.9	1	23	858	881	858	881	0.96
10	18	6.7e-06	0.001	20.5	1.0	2	23	889	911	888	911	0.97
11	18	0.00033	0.05	15.2	0.0	1	23	919	941	919	941	0.92
12	18	0.096	15	7.4	0.3	1	20	1000	1019	1000	1019	0.97
13	18	0.0023	0.35	12.5	0.1	2	23	1039	1060	1038	1060	0.96
14	18	1.6e-05	0.0024	19.3	1.2	1	23	1073	1095	1073	1095	0.98
15	18	0.0003	0.046	15.3	3.0	1	23	1117	1140	1117	1140	0.93
16	18	0.14	21	6.9	2.0	2	23	1201	1223	1200	1223	0.95
17	18	0.00078	0.12	14.0	1.0	1	23	1245	1268	1245	1268	0.93
18	18	0.0038	0.59	11.8	0.2	2	23	1363	1385	1363	1385	0.96

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATGGTGGAGAACGTCTCGGACTTCGGGAACGTGAAGAACGTCTGCAGACTGTGCCTTTCCGCGGACGGGCCTAGATCCTCGGTGTTCGCAACGCAGGAGGACGAAGAGACGGAGGACTCGTCCGGCCACCGCGTGCCGCTGGCCGCCAAGATTCAGGCTTGCCTGTCGATCCAGATTTCAGCAACCGACAGGTTGTCCACATTGATATGCGCAAATTGCGTGAAGAGCGTTAATCAATGGCACACCTACAAGGAGTCGTGCCTGCGTTCCCAGGACAAACTGCAAGAATGGCTGACAAGTCAGTTGCAATCAAATCCTCcgGTTATTCCAATATTCACGATCAAGGACGAACCAATGGACTTTGACGAAGATAATAATGTAGAATCTATCTCGGAGATCACCAATAATGTGGAGCAACCACATTCACCAATTCAAACAGTGGAAAACGATGAATGCAATAGTGAGAAAGTGCAAGAAGTAACGAATACCAGCGATGCGAAAGTACAAGAAGTAACAAATAAGAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGATGCGACAGTCCAAGAAGTAACAAGTAAGAGCGATGCGACGGTACAAGAAGTAACAAATAACAGCGATGCGACGCTACAAGAAGTAACAAATAACAGCGATGCGACAGTCCAAGAAGTAACAAGTAAGAGCGATGCGACGGTACAAGAAGTAACAAATAACAGCGATGCGACAGTACAAGAAGTAACAAGTAAGAGCGATGCGACGGTACAAGAAGTAACAAATAATAGCGATGCGACAGTACAAGAAGTAACAAATAACAGCGATGATACTAACAAAGATCCTGAACCAGTCCCACCTGCGGTGGAGAAGGAACCTAAtaaggaagaaaataaagcGGATCAGCAGGATCCTGTAACTCTGTGTTCCATTAAAAGCGAGCCACAGGATGAAGACGATACCTATAGTACTATAGAAGTAGAATCCACGAATAGCAGTGAGTTGCTGTTGAATCCCATGGTAGCCAGCGGGACAGAGGAAACGATCATGGAGGCCGATTCCACGCAGAGGTCTAACGCGGCCGGCGGACCGCCTAAGAAGAAATTGAGACGCGGTCCTCATACCCATTTTAGAGGAGCGCGTGTTTTTAAGCAGAAATGCCATCACTGCCAGATATTCCTGCACTCCAAGTACACGTACATGAAGCACATGAAGCGGTTCCACAGTAAAGAAAACGGCATTGACAATTCGGGATCGCAAAACGACGACGAGGAGATTGAAGATGTGGAAGATGAACTGATCAGCATGGAAAAGGACTCACCGCTGACGCAAGTCCAACAGGACATTATTAGTCAGCTGAAAACATTCTCTTGTTACATTTGCGAACAGACGTTTAACGATCGACGCAGCACTCTCTCTCACATACGTCAACATATGCCAGATTTGAGACCGTATACATGTATCGCCTGCCTGACGGAGTTTCCAGATCGATCGATGTATCAGTTACATTGTGGAGCTTCCTTCGAGTGCGCCATGAAGATCGCCCTAGTTATACCGAAACATGGTAACGAACAATACTTCACGTGCAACATGTGCCTGCGCTCGATGCCTGGTAGGAAGGAATTACTCAGCCACTTGTCGAAGCATTCTGACAAACAGTACGAAGAGATGATGTCGCCAACGCGAGCTCCGCCCAAGCTGAAACCGATGGCGCCGTTACCATCGAAAAATAACCTTCCCGATAGGATCATTAAAGGACCTTACAAGAACGGCGATCCGGCGCATAATCATGCCTGCGATCTATGCGGCATGATCTATCGATACCAGCCCAATATGGTCAAGCACAAGCAGATGTGCATGCAATTAGATCCGGAAAGCAGAGTCCTGTACAGGTGCGTACATTGTTACATGACGTTCCTCGTATTTAAGAAATTCCACTACCACATCACGGCCGACCATAAAAAGAAGGATTTTACTTGTTTCGTATGCTTTTCCGTATTTCGATCGCCGAGTGATTTCCTGACGCATCACGAGACTCATCGCTCAACAACAACAACGCAGGCTAATCGACAAGTGCAACACGACGATACCTCGCAGAATGCAGCTCAAGCGCCATTGAAGGAACGCAACGCTTACGAAGCAAATGTCAAGTCGAGAGTCAGTTCGCGAATATCAAGTCAGAAGTATAGCTGTCCCCTTTGTGCCCAGACATTCTCCACGAGGGTCGAGCTGAACGAGCATCGGAATCTCCATCTCAAAGTGAAGATATATTCGTGCGTCATTTGCCGCAGTATGTTCAGCAGCGCCGGCGCCTTGGAGATACATATGAAGGATCACGGTATCGACGACCCGAACGAGAGAAACGCTAATGTTTCCTGCATGGAATACGGCAGCTTGGACGAGGACGTGAGGATCGAGAAAGATTCGGTGAATACAAGTGCCATCTCGGATCCTGGTACGCAGATTCACGAGTGTGGCGAGTGCGGTAAGGTGCTATCCAATTACGCTAATCTCCGGCGACATGCTAAAATCGCTCACCGAAACTGTAAGATGTACGATTGTACCGAGTGCTCGCGTATGTTCATGCGTAAAGATCTATATGATCAACATATGTTAATTAAACACAACTCTGCGAAGACAATGCTGCAGTGTCCGCAGTGCCCTAAGAGTTTCGTCTTCCAATCAAATTTCACTTATCACTTCCGTACCGCCCACCTCGAGAAATCGCAGAACGGTTATGCCTGCGACATTTGCGGCAAGGTCTTCGTCGAGGAAGCGTCTTTGAAAATACACAAGGGCTGGCACAACCGTGCAAACTCGCGTCTCAGCACTCGATTCATACTCGGCAATCAAAAGGCGGCCAACGGACCGCAGAAGGAATCTAGTAGCGTCGAGTCTGGTGAGAATTCAGAACGACCGGCGAGAGCACGGAAGTCTTTCCCAAATCCTCCACCTCAATCACCGTCGAAATCGGGAAGTTTCCAATGTCAGGTATGCAATGACAAATTCAACGATGTCACAGAGCTGAGGACCCATCTGTGGGACGTCCACTGCGCTCGTAACAAGGCGGAGAAGAGTTTCTCCAACGACGATCTTCAGTGCGAACTCTGCACGAACATTTTCCCCGATCAGGAGACCCTGGCATCTCATATGCAATGGCACAAGGCCAATCCCATTCTCAGCGACATACAAAAGACATTCTCCTGCGACGTATGCGGCAAGTCTTACAGTTCGAAGAAGGTTTTGTGGAAGCACAAGAGGCTTCACAAGGCTACCGCTGTGGCCTCGATCAAATTCCAATCCTTAGCCAGAAAACCGATGGCCACGCAGTTCCTGTGCAACTTTTGCCGCAAGGTCTTCTCGAGCAATCAGTCTCTGCAACGGCATAAACTTTCCTTCCACAGTAGCGAATCGCAGAACCAACAGCGCGCGCAGCAACAACTGTATAACAGCAATCGAATATCGTCGTACGAGGACGAGCCGAAAGCGAAGCGCATGAAGTTCGAGCTTGAAAGTGAAAATTCGCAGGCCAAGCTGTCGCCTTTCGCCATGGACTTCGCCGGTGAGAGAAGGAAGCCAGTCATGTGCCACGTTTGCAAGAAAATGTTCCTCAATATGAGCGTGCTGTACAAGCACAAGCAAACGGTCCATAAACCTCGTGTAAAAAAAGACTTGACGCCCGAATGCATTCCGATGTCGACTCAGGATGGCAAGTTTTCATGCAACATCTGCTTCAAGGAATTCCCCGGTCTGTCGAATCTGCGACAGCATTTCACGATCAAGCACAAGAAGACGGCAGCTGCCGAAGCCGGCAGCGGCGCGTCGAGCAATGACAGACTGGTGCTCCCGACACCGGCCAAGGCACCCGAACGGTCAAGGGAATTCGAAGTGACCTACAATAACGTGATGTACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAATAAGGAGTCCATCATGAGCCATATCACCAATGTGCACAACACAGTGTACCAGGCCGACAGCAAGATGTTCCATAGAGAGACCAATCTGGGCGCTTACATAGTGAAGGACGCGATCGGAGCTACTTGCCCGCTATGTGACGTCAAGTATCCTAATAACAGAGCTCTGAAGATACACTATATCAAATTCCACGACGATGCCGATTAA
Protein Sequence: MDEDVVEMVENVSDFGNVKNVCRLCLSADGPRSSVFATQEDEETEDSSGHRVPLAAKIQACLSIQISATDRLSTLICANCVKSVNQWHTYKESCLRSQDKLQEWLTSQLQSNPPVIPIFTIKDEPMDFDEDNNVESISEITNNVEQPHSPIQTVENDECNSEKVQEVTNTSDAKVQEVTNKSDATVQEVTNNSDATVQEVTSKSDATVQEVTNNSDATLQEVTNNSDATVQEVTSKSDATVQEVTNNSDATVQEVTSKSDATVQEVTNNSDATVQEVTNNSDDTNKDPEPVPPAVEKEPNKEENKADQQDPVTLCSIKSEPQDEDDTYSTIEVESTNSSELLLNPMVASGTEETIMEADSTQRSNAAGGPPKKKLRRGPHTHFRGARVFKQKCHHCQIFLHSKYTYMKHMKRFHSKENGIDNSGSQNDDEEIEDVEDELISMEKDSPLTQVQQDIISQLKTFSCYICEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVIPKHGNEQYFTCNMCLRSMPGRKELLSHLSKHSDKQYEEMMSPTRAPPKLKPMAPLPSKNNLPDRIIKGPYKNGDPAHNHACDLCGMIYRYQPNMVKHKQMCMQLDPESRVLYRCVHCYMTFLVFKKFHYHITADHKKKDFTCFVCFSVFRSPSDFLTHHETHRSTTTTQANRQVQHDDTSQNAAQAPLKERNAYEANVKSRVSSRISSQKYSCPLCAQTFSTRVELNEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPNERNANVSCMEYGSLDEDVRIEKDSVNTSAISDPGTQIHECGECGKVLSNYANLRRHAKIAHRNCKMYDCTECSRMFMRKDLYDQHMLIKHNSAKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILGNQKAANGPQKESSSVESGENSERPARARKSFPNPPPQSPSKSGSFQCQVCNDKFNDVTELRTHLWDVHCARNKAEKSFSNDDLQCELCTNIFPDQETLASHMQWHKANPILSDIQKTFSCDVCGKSYSSKKVLWKHKRLHKATAVASIKFQSLARKPMATQFLCNFCRKVFSSNQSLQRHKLSFHSSESQNQQRAQQQLYNSNRISSYEDEPKAKRMKFELESENSQAKLSPFAMDFAGERRKPVMCHVCKKMFLNMSVLYKHKQTVHKPRVKKDLTPECIPMSTQDGKFSCNICFKEFPGLSNLRQHFTIKHKKTAAAEAGSGASSNDRLVLPTPAKAPERSREFEVTYNNVMYSCKLCKQCHVFNKESIMSHITNVHNTVYQADSKMFHRETNLGAYIVKDAIGATCPLCDVKYPNNRALKIHYIKFHDDAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765843;
90% Identity: iTF_01409401;
80% Identity: -