Tame024354.1
Basic Information
- Insect
- Temnothorax americanus
- Gene Symbol
- -
- Assembly
- GCA_030770215.1
- Location
- JASTWO010000412.1:614731-619412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.024 3.7 9.3 3.1 1 23 424 446 424 446 0.97 2 19 0.02 3.1 9.6 0.5 2 23 482 503 481 503 0.96 3 19 0.00053 0.081 14.5 1.1 1 23 570 592 570 592 0.96 4 19 0.00041 0.063 14.9 0.7 1 23 595 617 595 617 0.98 5 19 1.1e-05 0.0016 19.9 1.1 2 23 664 686 663 686 0.96 6 19 0.0041 0.64 11.7 3.1 1 23 692 714 692 714 0.96 7 19 0.00078 0.12 14.0 0.7 1 20 720 739 720 744 0.94 8 19 6e-05 0.0093 17.5 1.3 1 23 818 840 818 840 0.97 9 19 0.00025 0.038 15.6 5.0 1 23 899 921 899 921 0.97 10 19 0.00035 0.054 15.1 0.7 1 20 926 945 926 947 0.94 11 19 0.059 9 8.1 0.3 2 23 958 979 958 979 0.97 12 19 3.6e-05 0.0055 18.2 0.6 2 23 1018 1039 1017 1039 0.97 13 19 3.2e-05 0.005 18.4 1.6 1 23 1044 1066 1044 1066 0.95 14 19 0.0014 0.21 13.2 1.7 1 20 1072 1091 1072 1094 0.93 15 19 5.7e-06 0.00088 20.7 0.4 1 23 1110 1132 1110 1132 0.95 16 19 4.7e-07 7.2e-05 24.1 0.6 1 23 1138 1160 1138 1160 0.99 17 19 5.1e-05 0.0078 17.7 0.2 1 23 1166 1188 1166 1188 0.97 18 19 0.03 4.6 9.0 6.9 1 23 1194 1216 1194 1216 0.96 19 19 0.0064 0.98 11.1 0.6 1 20 1222 1241 1222 1243 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAGATAAATACGTCGGGTCCGGCGCAGGACGAGGACGCGATCGCGTCCGGCATGAACATATGCCGCGTCTGCCTGCTCGGCAACCTGATGATGCGCGACCTCTTCCTGGAGAGCGAGGTCGCGTCCCTGTCGGCGAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGCGACGGTCTACCGGCACAGGTGTGCTGCATGTGCGCCGCCAAGTTGGAGTCGGCGTACGAGTTTAAGTTACAAGTGGAGCAAGCCGACAACGTTCTTCGAGGAAAGCTCGTCGGTGGTATAATAAAGGAGGAGTTGTTTCTTAATGAAGTCGAAATACACTTGGATGCCGAGAGGAATGACAATATAGAAGAGATAAGTGTCAGTGCTGATTATGAATCTACCACTACGGTATTGTCAGTGGAGTCAGCAGCTGACAAGAACTTTCTGAAAAATCAGTTAATGATTTTGGAAGCTGAGAAATTGTCAGAGACAGAGGAAGTTCAACAAGATTCAGAACAAGATAACTCGCGAGAAAGCATTGTGGAAGAATTGCAGCAAGAATTGGCCGACGCGGAAGACAATGATATATCAGATGGTATCGATGAATCTAGGGCCGAAGAAGCTTCCAGCGACGAGAATATCATTCGAAGTTGCACAGATGCAATTCCAACAGAGGAACATGATTACATTATGCAGCAATGTAGTTTGCCTGCTGAACAACTCTCCTTGCAGGAAGAAATGCAGGAAAATGTACCAGAACTTGAGCAAGACACACTTGAATGCCAAGAAACATCGTCTGAACAAAACCAAGAGATTCAGGCTGAACAAAATCAAGAGATTCAAGCTGAGGAAGATCAAGAGATTGAAACTGAGCAAATTCACGAAATTCAAGCTGAGCAAAACCAAGAGATTCAGGTTGAAATAAACCAAGAGATTCAGGCTGAAATAGACCAAGAGATTCAGGCTGAAATAAATCAAGAGATTCAGGCTGAATTAGATCAAGAAGCTCAAGCTGAACAGGAGAATCAAGCTGAGCAAAATCAAAATGACACAGAGGTATTATTCAAGGAGGAAACGCTCACAGCTAATACTGATGAGCCAGTGGAACAGGAATCATCCCAGAATGAGACCAGGAGAAGTAAACGTAGATTGGCTCGTCGGATATTTACCGAGCGGAATTCCGACGAGGacaattatttcgaaaatctGAATCTCAGTTCTCGATTGAAAAAAGCGCAGTCGGACAAGACGGAGAAGATCTTTTTCATGTGTTACTTGTGCGATAAGCAATTCCTTTCGAAGAGCGTCCTGAAAGAACATATGCATTCCCACGAAGAAGTGAGAAAAACACTATCTCTGAAGAAAACACCGGAGAAACCGCAGAAGGTGCTGGCCAGCGCTTCCGCGAAGACGCCGCCATCCGGAAAGAAAGCCAACAAGTGCCCTTATTGTGGTAAAGAGTATCTGTACATAATCTCGTTTACCAAACACATTAAGCAACACGAGCGGGAGCGGGAGGAAGCGAAGGAGGATCCAATGCCACTCGAGATATCGTTCCATGAGGATGAGCACAGTCTAGACTTCGATAGCGGCAACAGATCGGATGACGAGTGCAAGAAGCGAAAGAGAGGAAATGCAGCCGACGATGACACGAGCGACAGCGATCAGGATAAGAGAAGAAAGCGCAGTCACGTTGAGGAGTTTGCTTGCGACAAATGTTCAGAAAAATTTGACACAAAGCGAGGCTTGCAGAAGCATTCGATCACGCATGTCAGCTTCGAGTGCAACGTGTGTAACGAGGAGTACGACACTCTGGAACAACTGAGAAATCACCGAACCAAGCACGTGGTCGAAGGAGTGCTCACCGAACAAGATTTGGAAGAGGACGTGAAGCAGATGAAGAGCGAGAACAACGATGAGGACAACAAGAACATCGAGATTGAGGAGCACAACGGCGAACCCACCGAAAACACGAAGGAACTGAAGTGCCCGACGTGCTCGATGACGTTCTCGCGCAAGAAAGCGCTGTCCAGACACATTGAGACGACGCACTCCAGCACCCGCTCTTACGAATGCAAGATATGCTGTCAACAATTTACACGGAAGGATCTCCTGCGCAGGCATGCCGAGCAGCACGCACGAGTGAAGACCTACAAGTGTACTCAGTGCAATAAGACCTTCGGCAACGAGCTCACGCTGAGAAATCACCTGGTTGCCACGAATCACAAGACATTCGTACACGGGCAGGAATACGATCCGAATAAGCGTATAAAGCGCGTGGCGGCGAGAGCGGCGCAGAAGATCATCGACAAGATCAAGACGGAGGACGGTCTCGAGGATTACGACGACGATAACGACGACAATACCGATTACGACGCCAAGTTGGACGGCCATTATCGTCGTAAGCGCGACGCTACACCAAAGAAGTACAGTTATAAGAAAGAGTTTGAGTGCGCGACCTGTAGCAAGAGGTACAGCTCGAAGCAAGCGTTGACAAAGCACATGGAGCAGCATGTGAAGGAAGAGAAAGCGGAAAAGGCAGCGGAGAAGGCGGCGGAGAAGCTGAAGAAAGCCGCTTTGGAGAAGAAGGAGGCGCAGAAGAAGGAGACGACGAGCAGCATAGGCGATAACGATGATGACGATAACGACTCCGACTTCGAGAGCGGCCTCGACTGGCCGATGGACAGTCACGAATGCACCACGTGCAAAAAACGATACAGCACGAAGAAGTCGCTGCTGCGCCACCAGCTGCTGCACGAGGAGCCGAACTTCGAGTGTGACATCTGCAACGTCAAGTTCTACCGCAAGGACAAGCTGAAGGCGCACTACGACAAGTGTTCCGAGAAGAATCCCGACCAGGTGAGGAAGTGCAATATCTGTGGCGACAGCTTCGAGAACAACGAGATCCTGCGCGAGCACAGAGCCAAGCACGTCACTGAAGGTATCTTAACGGAGGAGGATCTGATGGACATCGAGCCGAAATCCGAAGAGAAGAAACCGGGCGAGAAGATCGGTCGGAAGAGGAGGACCGATATCGTGGGGCTCGAGTGTACCGAATGCAACAAACAGTACACCTCCAGAAAAGGTCTACTGCGGCACATTCAGGTGCACGAGGGCAAGAAGTACCTGTGCGACATATGCCCGAAGAAGTTCTACCGGCGGGAACATCTGAAGATCCACGTGGCCAAGCACAACATGATCAAGCCGTACAAATGCACCCGATGCACCAAGCGCTTCATCAAGGAGGAGCAGCTCAATAATCACCTGCCTAAGCACGATCGCACGTTCAAGAAGACCAAGGAGACCGACAGCTCCAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACGACGCTGATAGCGCATCTGCGCGCCCACAACGGTATCAAGCCGTACGTGTGCGAGGTATGCTCCAGGCCGTTCACCACCAACGCCTACTTGAAGATGCATatgcgcacgcacacgcaggAACGTCCGTACATCTGCCAGTACTGTTCGCGAGCGTTCGCGCGCGCCGACACCTTGGCGAATCATCTGACGTCGCACACTGGCGAGGCCAAGTATCACTGCAAGTGCTGTCCGAAGAACTTCCGACGATTGAAATCGCTGAAGGAGCACATGTTTATTCATACGGGTCAGCGGCCTTACGAGTGTCCAACTTGCGACAGGAAGTTCAACAATAATGGCAGCCGCTATGCGCACAGCAAGCGGTGTAAGCAGAATCTTTTGCAGAATCAGAACCGGGCGCAGCAGATGATCCAGCAGACGACACAGCATCAGCAACAGCATccacagcagcagcagcagcagcagcagcagcaacagcagcagccgCAGCAAGTGCAGATACAGGTGCAGCAGCAACCGCATTCAGTCAGGTTGCATCAAACCATCGGCCAGGCGCAAGTGGTCAAGGCACAAAACATCAAAACGATCGCTATAGCGAGACCGGCTGAGCCTACCACGGTAACCACGGCGCAACAAGTTATGCAGCATCAGGAGATACTGATGCCTCTAATCCTGCCGCTTACCGTCACTCTCACCGACGTAGGCGAGGAGGTGATACTACCCGAGGGTACAAAGATATACACCACCTCTTAA
- Protein Sequence
- MDAVEINTSGPAQDEDAIASGMNICRVCLLGNLMMRDLFLESEVASLSAKAMSFANVKMLPGDGLPAQVCCMCAAKLESAYEFKLQVEQADNVLRGKLVGGIIKEELFLNEVEIHLDAERNDNIEEISVSADYESTTTVLSVESAADKNFLKNQLMILEAEKLSETEEVQQDSEQDNSRESIVEELQQELADAEDNDISDGIDESRAEEASSDENIIRSCTDAIPTEEHDYIMQQCSLPAEQLSLQEEMQENVPELEQDTLECQETSSEQNQEIQAEQNQEIQAEEDQEIETEQIHEIQAEQNQEIQVEINQEIQAEIDQEIQAEINQEIQAELDQEAQAEQENQAEQNQNDTEVLFKEETLTANTDEPVEQESSQNETRRSKRRLARRIFTERNSDEDNYFENLNLSSRLKKAQSDKTEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKTLSLKKTPEKPQKVLASASAKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFDSGNRSDDECKKRKRGNAADDDTSDSDQDKRRKRSHVEEFACDKCSEKFDTKRGLQKHSITHVSFECNVCNEEYDTLEQLRNHRTKHVVEGVLTEQDLEEDVKQMKSENNDEDNKNIEIEEHNGEPTENTKELKCPTCSMTFSRKKALSRHIETTHSSTRSYECKICCQQFTRKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFVHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDDNTDYDAKLDGHYRRKRDATPKKYSYKKEFECATCSKRYSSKQALTKHMEQHVKEEKAEKAAEKAAEKLKKAALEKKEAQKKETTSSIGDNDDDDNDSDFESGLDWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLMDIEPKSEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLPKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMIQQTTQHQQQHPQQQQQQQQQQQQQPQQVQIQVQQQPHSVRLHQTIGQAQVVKAQNIKTIAIARPAEPTTVTTAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIYTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126152;
- 90% Identity
- iTF_01409382;
- 80% Identity
- -