Truf004537.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Tachinus rufipes
Gene Symbol
salm_1
Assembly
GCA_963932245.1
Location
OZ010741.1:62933786-62943181[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.1 3e+02 4.5 0.1 3 19 2 18 1 20 0.92
2 10 6.5e-06 0.0017 21.0 0.9 1 23 316 338 316 338 0.98
3 10 1.3e-05 0.0034 20.1 2.1 1 23 344 366 344 366 0.98
4 10 0.081 21 8.1 3.8 2 23 680 701 679 701 0.98
5 10 5.6e-08 1.5e-05 27.5 0.6 1 23 707 729 707 729 0.97
6 10 7.8e-05 0.021 17.6 2.6 1 23 739 761 739 761 0.98
7 10 0.012 3.1 10.7 2.4 2 23 1026 1047 1025 1047 0.97
8 10 0.075 20 8.2 0.6 1 13 1053 1065 1053 1067 0.92
9 10 1.8e-06 0.00047 22.8 4.0 3 23 1236 1256 1234 1256 0.96
10 10 2.6e-07 6.8e-05 25.4 0.9 1 23 1262 1284 1262 1284 0.98

Sequence Information

Coding Sequence
ATGTGTCCCCGCTGCCAAGAACAATTCACGGACGTTCAGGAATTCCTTACGCACAAAGCAGAGTGTGCTTTAAAAGCGAAAAGACATGAAGAGCCGGCACATTCAGATCCTGAAGACATGGTGGTATCCGAAGACGACGACGATGATGACGATGACGATGAGACTGGTGGAAAACGACTAGAAAGAATGCGGCGACATCGTCAAGATGCGGCAAATAATAACAGCGTAGAAGAGGGTTCAACGGATGAGTCCAGTGCCAGAATAGGGTTTCCTTTTGCAGAGCCGGCTGCAGGAGGGCATGTCACACTCGAAGcactacaaaatacaaaagtagCTGTAGCACAGTTTGCAGCTACCGCAATggcaaataatgaaaataatgaagCCGCTCTGCAAGAATTGGCCGTCTTGCAATCTACATTATTTACACTACAACACCAACAagtattacaattacaattaattaatcaattacaacaacaattatcaataaataaaccgGGCAGCCCTGCATCAACAACACATGAAAATGACAGTGAACCGGCTCTAATTGAATCGCCGCCCCCACAAGCTCTTCCAATTCCAAGAGAACCGACGCCTGTTTCTCTACCTCCCCCAATTAGCCAGCCGATGGCACAGCAGCCGCCGATCAGTGAACCTAAAGTAGAAGTTTCGGTTCCGCTATCTCTACCTCCACAAATTCAACCACCTCACTGTTCCATATCATCATCATTAGCATCAACAATAATTACACATAATAATGATCCTCCATCCATGGATGAACCTAACACATTAGAAATGTTACAAAAGCGTGCACAAGAAGTGTTAGATAATGCCAGCCAGGGTTTATTAGCTACGAATTTAGCAGATGAATTAGCTTTTAGGAAAAGCAAAGGATCTTTATCACCTTACGATTCCAAAGGTAGAAATGAACCATTTTTCAAGCATAGATGTCGATATTGTGGAAAAGTATTCGGTTCAGATTCTGCTTTACAAATACATATCCGCTCTCACACAGGTGAGCGCCCATTTAAGTGCAATGTATGTGGAAGCCGCTTTACGACCAAAGGGAACCTTAAGGTTCATTTTCAAAGACACAGTTCCAAGTTTCCTCATATCAAAATGAATCCGAATCCAGTACCAGAACATTTGGATAAATATCACCCACCATTACTGGCCCAATTAGGCCAACAACCGTCTCTATCACCGGGTGGCCCACCACATCCACATATGGGATTCCAACCAGGAGGCCATCCATTTCCACCTACATCACTTCCCATGTATAGACCTCCAGGTCCACCTccagaattattaaataatcgaTTACCACCTTCGCCACATAGACCACAAGATACGTCATCAAGATTATTTCCACCCCatccatttttattaaaacgcgAAGAACAAGATATGCCCGAAAATCTGAGTAAACCAATCAGATCACCCACGCCTACTCCAGAAACTCGATGTAAAACAGAAACACCAGAAGAAAAGCCTGAACATATTGACGAGCCACGAGATCTGCAACAACAAATGAACGAGGCCGAAATAACACCAAAACAAGAAATGGAAATTGACCATGAACAAGAACAAGAGCCGGAAAGGTTTCCATCACCTGTCCCGTACGATGAATGCAGTATAGATAGTAAGTACAGCAACGaagatttattagaaaatagaaGTCCTGGCGCTGAACAAAATGATAACATGCAAGATGAGccagaaaatttatcaaataaaagtaactcAATCACATTACCATTAAGTATATCAACTGGACAGAGATTGCCGCCTAATTTTCCATTTGGACATGCAGCTTCCTCACCTCCTAGCAGTACATCTTCTGGTAGTTTAGGTCCTTTTCCAACTCCTATGGCAGACCCAGCCCGCGATCCAGCCATATATGCTAATCTGTTGCCGCGTCCAGGTAGCAATGATAACTCGTGGGAAAGTCTTATTGAAGTTACAAAAACATCAGAAACGAGCAAGTTACAGCAACTGGTTGATAATATCGAACATAAATTATCTGATCCAAATCAGTGTGTAATTTGCCATCGAGTATTATCTTGTAAGAGTGCACTTCAAATGCACTACCGTACGCATACAGGTGAACGGCCGTTTAAATGCAAGATTTGTGGCAGAGCATTTACTACCAAAGGGAATCTAAAAACTCACATGGGCGTACACCGTGCTAAACCCCCAATGCGTGTACTTCATCAATGTCcggtttgtcataaaaaattcaCAAACGCTCTTGTTCTACAACAACATATAAGGTTGCATACCGGAGAACCAACTGATCTCACTCCAGAACAAATACAAGCAGCTGAAGTAAAAGACTTTCCTTCTCCAGGGGGGTTCCCTCCGCTTCCAAATTCCATACATCCATTCCTAAGTCAAGGTTTCCAAGTACCCGGATTATCACCACTTGGTCCTGGCGGCTTTCCTATGAACATGAAAATCGATTTTGACAAAGACTTTAAATGCGAACAAGATTATAATATggaagatgatgatgatgacgaCGATGATATGAGTAACTCTGAGCATAATTTATCATTCTCTACATCTCCAGGAGaacaaaatgtagtaaataTGAATGTAGCAGCATCGCAGCTTTCTGCTTCAGGTTTGAGTTATTCAACAGAAGATCTCTGCTCTGCAAGAACGGCACCTTCCACATCACCGATGCAAAATGGCGAGAAGTCGCCATCACGATCCGGCATTACAAGTCCTGGAAGCTCGGAACTGCGTTCATCCCCAAATCACGCATCTACGCCCGTCCAgGTTCCACGGCCACCATCATCACAACAACCAAACAGCCCTACACCATCTGAATCTAATTCGCTTGGTGCACTTGACCTTACACCAAAAACAAATCAGCCACTGACTACAAGTCCTGGACCGCATCCAGGTCCTCCCTCGCTGTTTTCATCGTTCGGACTCATTCCACCTAGCCAAGCAAGTTCTCCGCTAATATCATCCGCACTATCATCTTTaacttcatcagtattaacgtCTACAGCATTTAGTCCGTTACGACTAGCAGTGGGACCAGGAGtACGAGGAAACACCACATGTAATCTGTGTTTCAAGACGTTTGCTTGCAACTCGGCTCTGGAGATTCATTATCGCAGTCACACTAAAGAACGACCGTTCAAGTGCAGCGTATGCGATCGAGGATTCTCCACAAAGGCTGGCGAAGAGTGCGTATGCGGTCAGAGGCGTATCCAGGACGAAGCGGAGCCTGCTAGGGCAGGAAAAAGAAAACCGCCCTCATCGCTTCGCAGGAATATCCCTACTAAATTTCCATTACCAATGAGCCCTGGATACGCCACTGCCTTGCATTGGAGCTCGCTAGCGGGCAACATGAAACAACATATGTTGACGCACAAAATCCGAGATATGCCACAACATATGTTTGATAAGCCGCCGTCGAGTGAGGATTTGCCTTCacctcaacaacaacaacaacaacagcttcatcatcatcatcagcagcagcagcaacaacaacaacaacaacaaagtcTCCGTGAACGAGAAATGAACCCACAACATGAGTCGGAACATCCGCCGCCGCCACAGCCTCCTTTGCATCCTCCACAACCAGAACTACCCAAAGAGCCAATAAAGCGAGCCCCATCGGAAACAGAATTGCCTCTTCCCAAACGACCACCGAGCTTGCAGGCCAATAAACACTTGTGCCACGTGTGTAATAAGAACTTCTCGTCCAGTTCGGCCTTGCAGATACACATGCGTACACATACGGGGGATAAGCCGTTCCGTTGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGAAATCTAAAGgTTCACATGGGCACTCATATGTGGAGCAACGGGGCATCGCGGCGAGGGCGTCGCATGTCACTAGATCTTCCGCCCATTCCCATGACACCCAAGGATTCAGAATTTCTGCAGCGGAGGCCCGATCTCTTTTACCCGTACCTCCCGGCTCCATTCCTTAACGGCATGCAGCAAAAGCTGAACGAGATCTCAGTGGTACAGAATCCTCAAAATGGTATGGGTGGTGCCGGAAAGTATAGCGGTTTACTGGGTTTCGGTTACCCGCCACCAGATTCGATGCGATCCCAAGCGGGCACACCTGAGAGACCGCCGTCCAGACCTCCAAGTCGTGAACCGGAGCGACTGTGGGACTTGCACTTTGAACGGAAATCTGCTGGGGATGCGCCTCGCGAGGAGCTGATGCCACCAAGTCGAGAAGGACTAGCTGCCTGA
Protein Sequence
MCPRCQEQFTDVQEFLTHKAECALKAKRHEEPAHSDPEDMVVSEDDDDDDDDDETGGKRLERMRRHRQDAANNNSVEEGSTDESSARIGFPFAEPAAGGHVTLEALQNTKVAVAQFAATAMANNENNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLSINKPGSPASTTHENDSEPALIESPPPQALPIPREPTPVSLPPPISQPMAQQPPISEPKVEVSVPLSLPPQIQPPHCSISSSLASTIITHNNDPPSMDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSLSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSSKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPSLSPGGPPHPHMGFQPGGHPFPPTSLPMYRPPGPPPELLNNRLPPSPHRPQDTSSRLFPPHPFLLKREEQDMPENLSKPIRSPTPTPETRCKTETPEEKPEHIDEPRDLQQQMNEAEITPKQEMEIDHEQEQEPERFPSPVPYDECSIDSKYSNEDLLENRSPGAEQNDNMQDEPENLSNKSNSITLPLSISTGQRLPPNFPFGHAASSPPSSTSSGSLGPFPTPMADPARDPAIYANLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPPLPNSIHPFLSQGFQVPGLSPLGPGGFPMNMKIDFDKDFKCEQDYNMEDDDDDDDDMSNSEHNLSFSTSPGEQNVVNMNVAASQLSASGLSYSTEDLCSARTAPSTSPMQNGEKSPSRSGITSPGSSELRSSPNHASTPVQVPRPPSSQQPNSPTPSESNSLGALDLTPKTNQPLTTSPGPHPGPPSLFSSFGLIPPSQASSPLISSALSSLTSSVLTSTAFSPLRLAVGPGVRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCSVCDRGFSTKAGEECVCGQRRIQDEAEPARAGKRKPPSSLRRNIPTKFPLPMSPGYATALHWSSLAGNMKQHMLTHKIRDMPQHMFDKPPSSEDLPSPQQQQQQQLHHHHQQQQQQQQQQQSLREREMNPQHESEHPPPPQPPLHPPQPELPKEPIKRAPSETELPLPKRPPSLQANKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVVQNPQNGMGGAGKYSGLLGFGYPPPDSMRSQAGTPERPPSRPPSREPERLWDLHFERKSAGDAPREELMPPSREGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01371650; iTF_01058595; iTF_00430053; iTF_01258406; iTF_00466697; iTF_00465263; iTF_00434357; iTF_01197002; iTF_01126673; iTF_01096845; iTF_00920852; iTF_01186453; iTF_01185435; iTF_00369724; iTF_01059293;
90% Identity
-
80% Identity
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