Basic Information

Insect: Nicrophorus investigator
Gene Symbol: salm
Assembly: GCA_963457615.1
Location: OY735140.1:37761837-37770309[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.63 57 4.7 0.1 3 20 2 19 1 21 0.92

2 10 4.3e-06 0.00039 20.9 0.9 1 23 336 358 336 358 0.98

3 10 8.6e-06 0.00078 20.0 2.1 1 23 364 386 364 386 0.98

4 10 0.054 4.9 8.1 3.8 2 23 691 712 690 712 0.98

5 10 3.7e-08 3.4e-06 27.4 0.6 1 23 718 740 718 740 0.97

6 10 5.2e-05 0.0047 17.5 2.6 1 23 750 772 750 772 0.98

7 10 0.0079 0.72 10.7 2.4 2 23 1056 1077 1055 1077 0.97

8 10 0.89 81 4.2 5.4 1 14 1083 1096 1083 1099 0.92

9 10 1.2e-06 0.00011 22.7 4.0 3 23 1282 1302 1280 1302 0.96

10 10 1.7e-07 1.6e-05 25.4 0.9 1 23 1308 1330 1308 1330 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.63	57	4.7	0.1	3	20	2	19	1	21	0.92
2	10	4.3e-06	0.00039	20.9	0.9	1	23	336	358	336	358	0.98
3	10	8.6e-06	0.00078	20.0	2.1	1	23	364	386	364	386	0.98
4	10	0.054	4.9	8.1	3.8	2	23	691	712	690	712	0.98
5	10	3.7e-08	3.4e-06	27.4	0.6	1	23	718	740	718	740	0.97
6	10	5.2e-05	0.0047	17.5	2.6	1	23	750	772	750	772	0.98
7	10	0.0079	0.72	10.7	2.4	2	23	1056	1077	1055	1077	0.97
8	10	0.89	81	4.2	5.4	1	14	1083	1096	1083	1099	0.92
9	10	1.2e-06	0.00011	22.7	4.0	3	23	1282	1302	1280	1302	0.96
10	10	1.7e-07	1.6e-05	25.4	0.9	1	23	1308	1330	1308	1330	0.98

Sequence Information

Coding Sequence: ATGTGTCCGCGCTGTCAGGAGCAGTTCACGGACGTCCAAGAGTTCCTCACCCACAAAATCGAGTGCGCGCTCAAAGCGAAGAAACACGAGGAACCCGCGCATTCCGACCCCGAAGATATGGTCGTATCCGAGGACGATgatgaggaagaggaggacgaCGAGAACGGCGGTAAACGATTGGAGCGGATGCGACGGCATCGACAGGATGCTGCAAACAACAACAGCGTGGACGACGGTCCACCGGGTGATGAGACGTCCGGAGGACCTCCAGTTGGATTTCCGTTTCCAGTGCCGGCACCAGGTGGTCACGTAACGTTGGAGGCGCTCCAAAACACCAAAGTTGCAGTAGCGCAATTCGCGGCAACCGCGATGGCAAACAACGAGAACAACGAGGCCGCCCTTCAGGAGCTCGCAGTGTTACAGTCGACACTCTTCACCCTCCAGCATCAGCAAGTGTTGCAGCTGCAGCTCATCAATCAACTGCAGCAGCAGCTGTCCATCAACAAACCAGGAAGTCCGGCATCGACGACGCACGAGAACGACTCCGAACCACTGGTGGCGGATTCGCCTCCGCCGCAACCCCAGATGCCGGTAATTCTGCCGCCCCCAACGAGTCAACAGCTGATGCCTACATCGAGGGAACCGACCCCGGCGCTGCCGCCACCCGTTTCCCAACCGATGCATCAACAACCACCGCCTCCAGTGGAACACATTCCCACGGAGGTTGTGTCGATGCCCTCATCTCTACCTCCCCAAATACAACCCCCACTATGTTCCATATCATCTTCCCTCGCCTCGACCATCATCACTCACAACAACGAGCCACCTCCATCCATGGATGAACCAAACACGCTGGAGATGCTCCAGAAGAGAGCGCAGGAGGTCCTCGACAACGCCAGCCAAGGTCTTCTCGCCACAAACTTAGCCGATGAGTTGGCGTTTCGCAAAAGCAAGGGCTCACTATCCCCGTACGACTCGAAGGGCAGGAACGAGCCCTTCTTCAAGCACAGGTGTCGCTACTGCGGTAAAGTCTTTGGCTCGGACTCTGCGCTTCAAATACATATCCGCTCCCACACCGGGGAGCGCCCATTCAAGTGCAACGTCTGCGGCAGCCGATTCACCACCAAAGGCAACCTGAAGGTCCACTTCCAGAGGCACAGCTCCAAATTTCCCCATATCAAAATGAACCCGAACCCCATCCCCGAGCACCTGGACAAGTACCATCCACCGCTGCTGGCACAATTAGGTCAGCAACCATCTCTTTCACCTGGAGGACCTCCACATCCTCCGCCGCATCTGGCATTCCCACCGACGCATCCCTTCCCGCCCACATCATTACCGCTCTACCGACCTCAACCGCAGGAGATGatgaacaacaacagcagaaTGCCGCATTCTCCGCATCGGCCGCAGGAAGCTCCAAGGTTATTTCCGCCGCATCCTTTTCTCCTCAAGCGAGAGGAGCAAGAAGTCCCGGAGAACTTGAGCAAACCGCCGCGCTCTCCAACGCCGGAAGCGAAAAGCTGCAAGACTGAGATCATGGATGATAGTAAACGAGAGGTGGAGGAGAGCGGCATCGCAGATATCACTCCAAAGCAGGAGATGGACACGGACATGGAGCATGAACAAGAACGTTTTCCATCGCCCGTACCCTACGACGAATGCAGCATAGACAGCAAATACAGCAACGAGGAGCTGCTAGAGAACCGCAGCCCCGGAGCCGAGCAGACGGAGAATATGCAGGATGAACCGGAGAACCTCTCCAACAAAAGCAACTCCATCACTTTACCGTTAAGTATTTCGACGGGCCAACGTTTGCCCGCCAATTTCCCTTTCGGACATGCGGCGTCTTCACCGCCGAGCAGCACATCCTCGGGTAGTTTAGGACCTTTTCCAACGACCCCGATCGCTGATCCGGCCAGAGATCCAGCCATTTATGCCAATTTATTGCCGAGACCCGGAAGCAACGACAACTCTTGGGAGAGCCTCATTGAAGTGACCAAAACGTCGGAGACGAGCAAGCTCCAGCAGCTTGTAGATAACATCGAACATAAGTTGTCCGATCCGAATCAGTGCGTGATCTGCCACAGGGTGTTATCGTGCAAGAGCGCCTTGCAGATGCACTACCGCACGCACACGGGAGAGAGGCCGTTCAAATGCAAAATCTGCGGACGGGCTTTCACCACCAAAGGCAACCTGAAGACGCACATGGGCGTGCACAGAGCAAAACCGCCGATGCGCGTCCTTCACCAGTGCCCCGTTTGTCACAAGAAGTTCACCAATGCTCTGGTGCTGCAACAGCACATCAGGCTGCACACCGGAGAACCCACGGATCTGACGCCAGAGCAGATTCAGGCAGCTGAAGTCAAAGACTTCCCGTCTCCAGGCGGATTCCCGCCTCTACCCAACTCCATACATTCATTCCTGAGCCAGGGCTTCCAGGTGCCCGGCCTCTCGCCGCTCGGCCCCGGCGGATTCCCGCTCAATATGAAGATGGAGGATATGAAAGCCGAAGACTTTATGatggacgacgacgacgatgatgacgaCGACGATATGATGAGTAACTCTGAGCACAATTTGTCTTTCACGACGTCGCCAGGGGGTATTGGAGATCTTCACCTACAACACCACACGACAGCCGCCGCGATAGCCGCCCACCAGATGAGCATCTCCGGTTTGAGTTACTCCAACGAGGACCTCTGCAGAACGGTACCATCCACCTCTCCGATCGTCCAGAACGGAGAGAAATCGCCCACCCAGTCCGGCCTCACCAGCCCCGGCAGTTCAGACCACATCAGGTCATCGCCCAACCAAATCAACCCCGTCCAGATTCCACGACCGCCTTCGTCGCATCAAGCCAACAGCCCGACGCCATCCGAATCGAATTCGCTGGGTGCTTTGGATCTGACGCCGAAGAGTCTCAGCCAGCAGCTGCAACAGCATCAACAGCAGCTACCACCGACGACGACGGCCACGAGCAGTCCGGGTCCGAGTCCCGGAGCTCCATCGCTCTTTTCCTCATTCGGATTGCTGCCACCAGGTCAAGGAAGCTCTCCGCTCATGTCTTCAGCCCTGTCCTCCCTAACATCATCTGTATTGACGTCCACCGCGTTCAGTCCGCTCCGTCTCGCAGTTGGCCCAGGAGCAGTGAGGGGAAATACGACGTGCAACCTGTGCTTCAAGACGTTCGCTTGCAATTCCGCTTTGGAGATCCACTACCGCAGTCACACCAAGGAGCGACCCTTCAAGTGCAGCGTCTGCGATCGAGGATTCTCGACCAAGGACTGTGTATGCGGTCAGAGGCGTATCCAGGACGAAGCGGAGCCTGTAAGGGTCGGCAAAAGAAAACCGCCCTCATCGCTTCGCAGGAATTTCCCTACTAAATTCCCGTTACCAATGAGCCCTGGATACGCCACTGCCTTACATTGGAGCTCACTGGCGGGCAACATGAAGCAGCACATGCTGACGCACAAGATTCGAGATATGCCGCAGCACATGTTCGACAAGGGCGACGATGGAGCGCCGCAGCAACCGCAACTTCCATTACCTCCactaccaccaccaccaccatctcaacaacaacagcagcaacaacaacaacaatcgcagcagcaacagcatcagcagcagcagcagcaacagcagcagcagcagcagaggGAAAGAGAGATGCTGTCGCAACCTTCGcctcagcagcagcagcaacagcaggaATGCGAACCTATGTCCACGCAGCAGCCCCAATCCGAGCCGCCCCATAAAGAAGCGAAACGCGCACCACCAGAAGCCGAGCTGCCGCTCCCCAAGCGACCGCCGAGCTTGCAGGCCAATAAACATTTGTGCCACGTGTGTAATAAGAACTTCTCGTCCAGTTCGGCCTTGCAGATACACATGCGTACACATACGGGGGATAAGCCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGAAACTTAAAGGTGCACATGGGCACGCATATGTGGAGCAACGGGGCGTCGCGGCGCGGTCGTCGCATGTCCCTCGACCTTCCACCCATACCCATGACCCCCAAGGATTCCGAATTTCTTCAGCGGAGGCCCGATCTCTTCTACCCGTACCTCCCGGCTCCGTTCCTTAACGGCATGCAGCAGAAGcTGAACGAGATCTCAGTGGTACAGAATCCTCAGAACGGATTGGGCGGCGCCGGCAAGTACAGCGGCCTCCTGGGTTTCGGATACCCGTCGGGGGCGGCGTCGGGTGCGGTGGACGCGTTGAGGTCGCAGTCGGGAACACCGGATCGCGAGCAATCGTCGAGACCGCCGAGTCGCGAACCGGAACGCCTCTGGGACCTGCACTTCGAGAGGAAGGGCGCCGGCGACGCCAACCGCGAGGACCTTCTGCCACCGGGTCGGGAGGGCCTGGCGGCCTGA
Protein Sequence: MCPRCQEQFTDVQEFLTHKIECALKAKKHEEPAHSDPEDMVVSEDDDEEEEDDENGGKRLERMRRHRQDAANNNSVDDGPPGDETSGGPPVGFPFPVPAPGGHVTLEALQNTKVAVAQFAATAMANNENNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLSINKPGSPASTTHENDSEPLVADSPPPQPQMPVILPPPTSQQLMPTSREPTPALPPPVSQPMHQQPPPPVEHIPTEVVSMPSSLPPQIQPPLCSISSSLASTIITHNNEPPPSMDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSLSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSSKFPHIKMNPNPIPEHLDKYHPPLLAQLGQQPSLSPGGPPHPPPHLAFPPTHPFPPTSLPLYRPQPQEMMNNNSRMPHSPHRPQEAPRLFPPHPFLLKREEQEVPENLSKPPRSPTPEAKSCKTEIMDDSKREVEESGIADITPKQEMDTDMEHEQERFPSPVPYDECSIDSKYSNEELLENRSPGAEQTENMQDEPENLSNKSNSITLPLSISTGQRLPANFPFGHAASSPPSSTSSGSLGPFPTTPIADPARDPAIYANLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPPLPNSIHSFLSQGFQVPGLSPLGPGGFPLNMKMEDMKAEDFMMDDDDDDDDDDMMSNSEHNLSFTTSPGGIGDLHLQHHTTAAAIAAHQMSISGLSYSNEDLCRTVPSTSPIVQNGEKSPTQSGLTSPGSSDHIRSSPNQINPVQIPRPPSSHQANSPTPSESNSLGALDLTPKSLSQQLQQHQQQLPPTTTATSSPGPSPGAPSLFSSFGLLPPGQGSSPLMSSALSSLTSSVLTSTAFSPLRLAVGPGAVRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCSVCDRGFSTKDCVCGQRRIQDEAEPVRVGKRKPPSSLRRNFPTKFPLPMSPGYATALHWSSLAGNMKQHMLTHKIRDMPQHMFDKGDDGAPQQPQLPLPPLPPPPPSQQQQQQQQQQSQQQQHQQQQQQQQQQQQREREMLSQPSPQQQQQQQECEPMSTQQPQSEPPHKEAKRAPPEAELPLPKRPPSLQANKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVVQNPQNGLGGAGKYSGLLGFGYPSGAASGAVDALRSQSGTPDREQSSRPPSREPERLWDLHFERKGAGDANREDLLPPGREGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01400627;
90% Identity: iTF_01059293;
80% Identity: -