Llun009596.3
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- salm
- Assembly
- GCA_963942505.1
- Location
- OZ012667.1:48705156-48711579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.72 1.1e+02 4.9 0.1 2 19 41 58 40 60 0.91 2 10 5.7e-06 0.00091 21.0 0.9 1 23 356 378 356 378 0.98 3 10 1.1e-05 0.0018 20.0 2.1 1 23 384 406 384 406 0.98 4 10 0.071 11 8.1 3.8 2 23 719 740 718 740 0.98 5 10 4.9e-08 7.8e-06 27.5 0.6 1 23 746 768 746 768 0.97 6 10 6.9e-05 0.011 17.6 2.6 1 23 778 800 778 800 0.98 7 10 0.01 1.7 10.7 2.4 2 23 1068 1089 1067 1089 0.97 8 10 0.066 10 8.2 0.6 1 13 1095 1107 1095 1109 0.92 9 10 1.6e-06 0.00025 22.7 4.0 3 23 1265 1285 1263 1285 0.96 10 10 2.3e-07 3.6e-05 25.4 0.9 1 23 1291 1313 1291 1313 0.98
Sequence Information
- Coding Sequence
- ATGGCGGCGTTACTCATAAACAGTGCTTTTCAACAGTGCTTTGTTGTTACAGGTGACACACCCGATGAAGAAGTGCAACAGATAACATCCGACGAAGATCTGCAATACGGTGATGCACTGATGTGTCCGCGATGTCAAGAGCAATTTACGGACGTACAGGAATTCCTAACACACAAAGCGGAGTGTGCTTTAAAGGCGAAAAAACATGAAGAGCCTGCACATTCGGATCCAGAAGACATGGTTGTCTCTGAAGATGATGAAATGGACGACGAAACAGGAGGTAAACGTTTAGAACGTATGCGGCGACATCGCCAAGACGCTGCTAATAATAACAGCGTCGACGAAGGTTCACCAGATGATGAATCAAGTGCTAGAATCGGTTTTCCATTTCCTGTGCCCACTCCTGGCGGACATGTCACATTAGAAGCATTACAAAATACTAAAGTTGCGGTAGCACAATTCGCAGCTACAGCAATggcaaataatgaaaataatgaaaccgCACTGCAGGAGTTAGCGGTATTGCAATCAACTCTTTTTACCCTACAACATCAACAAGTATTACAATTACAACTGATAAATCAACTGCAACAACaactatcaataaataaacCGGGTAGCCCGTCGTCCACAACACAGGAGAATGATAGCGAACCCCCTATGGCAGAATCACCGCCACCACCTCAAATAATACCAATCTCGAGAGAACCAACGCCGGCATCATTGCCGCCCCCAATTAGCCAACCTTTAACACAACAGCCACCTATAACCCCACCTACACATGAAATATCCGTTCCTCCATGTCTACCTCCACAAATACAACCTCCACTATGTTCCATATCATCATCTTTAGCATCAACTATAATAACACACAACAATGAACCGCCACCATCAATGGACGAACCAAACACATTAGAAATGCTTCAAAAGCGCGCACAAGAAGTACTAGACAACGCCAGTCAAGGCCTACTCGCCACCAACTTGGCTGATGAATTAGCTTTCAGAAAAAGCAAAGGTTCAATGTCCCCATACGACTCAAAAGGTAGAAACGAGCCTTTCTTTAAACACAGGTGTCGCTATTGTGGTAAAGTGTTCGGTTCCGATTCAGCACTACAAATACATATCCGTTCGCATACCGGCGAGCGCCCTTTCAAGTGCAACGTATGCGGAAGTCGGTTTACAACAAAAGGAAATCTAAAAGTTCATTTCCAGCGACACAGCTCGAAATTCCCTCATATCAAAATGAACCCAAATCCAATTCCCGAACATCTAGACAAATATCACCCACCGCTTTTAGCACAACTCGGACAACAGCCGTCTTTATCGCCCGGTGGCCCACCACATCCACCACACATGGGGTTTCCACCAAGCCACCCATTTCCACCAACATCTTTACCTATGTACAGGCCTCCCGGGCCGCCACCAGATATGATGAACAACCGACTACCACCGTCGCCCCACCGACAGCCAGAAGCAGCGCCCAGATTATTCCCACCACATCCATTCCATTTATTAAAAAGAGAAGAACAAGACGTTCCTGAAAATCTAAGCAAACCGATTAGATCGCCAACGCCAACACCACAAGAATCGCGTTGTAAAATAGAACCAATGGAAGAAAAACGAGAATTTTcacatgaaataaaaaataatttatcggAAATTACACCAAAACAAGAAATGATTGATACAGATATTGAGCCGGAACAAGAACCGGAACGTTTTCCATCACCAGTTCCTTATGATGAATGCAGTATTGATAGCAAATACAGCAACGAAGATATGCTTGAAAATAGAAGCAACGGTGGCGATCAATCCGAAAATATTCAAGACGAACCTGAAAATTTATCAAACAAAAGTAGTTCAATCACATTACCCCTGAGTATTTCAACCGGACAACGCTTGCCAGCTAATTTTCCATTCGGGCATGCAGCGTCATCACCTCCAAGCAGCACATCATCAGGTAGTCTGGGCCCTTTTCCAACAACCCCCTTAGCTGATCCAGCCCGCGACCCTGCAATTTACGCCAACCTACTACCACGGCCGGGCAGCAATGATAACTCGTGGGAGAGTTTAATTGAAGTCACAAAAACATCTGAAACAAGCAAACTACAGCAACTAGTTGATAACATCGAGCATAAATTGTCGGACCCAAATCAGTGCGTGATTTGCCACCGAGTTTTATCCTGCAAAAGCGCACTCCAAATGCACTACCGCACTCACACGGGCGAACGGCCGTTTAAATGCAAGATTTGTGGCCGCGCATTCACCACTAAAGGAAATTTGAAGACCCACATGGGGGTGCACCGAGCGAAACCTCCCATGAGAGTCCTGCACCAGTGTCCTGTGTGTCATAAGAAATTCACGAACGCGCTGGTATTGCAGCAGCACATCCGACTACACACCGGCGAACCGACTGATCTCACCCCGGAACAAATACAAGCGGCCGAAGTGAAAGACTTTCCTTCGCCCGGTGGCTTCCCGCCACTTCCGAATTCCATGCATCCATTCCTGAGCCAGGGTTTTCAAGTTCCTGGTTTATCGCCACTCGGCCCTGGCGGCTTTCCAATTAACATGAAATTGGGCGACTACGACAAAGACATGAAATCTGAACAGGATTATAATATGGATGACGACGACGATGATGATGACGACATGATGAGCAACTCCGAGCACAATTTATCCTTCACCACATCGCCAGGCGAGCAAAACCATTTGGGGCAAATGAATGTGGCGGCATCGCAATTGTCTGCATCCGGATTAAGTTACTCTACGGAAGATTTGTGCTCGGGTAGAACAGCACCCTCAACATCGCCCGTGCAAAACGGAGAAAAATCACCTACACAATCAGGACTTACTAGTCCGGGCAGCTCGGAAATTAGATCGTCACCAAATCATATGTCAACACCCGTACAGGTTCCTAGACCGCCTTCATCGCAACAACCAACAAGCCCGACGCCATCCGAATCAAATTCACTTGGCGCACTCGATCTGACCCCTAAAACAATTCAGCAACCACCGACAAGTCCCGGGCCACATCCGGGCCCCCCGTCTCTATTCTCGTCATTCGGTTTGTTGCCACCAGGTCAGGGTAATACTCCCTTGATATCATCAGCGCTGTCATCGTTAACGTCTTCGGTACTTACATCCACAGCGTTTAGTCCGCTTAGATTGGCGGTCGGACCAGGagGGCGAGGCAACACGACATGCAATCTATGTTTTAAGACGTTCGCCTGCAACTCAGCCCTGGAGATTCATTATCGCAGCCACACCAAGGAGCGCCCGTTCAAGTGTTCAGTGTGCGATCGAGGATTCTCCACGAAGGCTGGTGAAGAGTGTGTATGCGGTCAGAGGCGTATCCAGGACGAAGCGGAGCAAGGTAGGGCCGGCAAAAGAAAACCGCCCTCGTCGCTTCGCAGGAATATCCCTTCTAAATTTCCATTGCCAATGAGCCCTGGATACGCCACTGCCTTGCATTGGAGCTCGCTAGCGGGTAACATGAAACAACATATGTTAACGCATAAAATCCGTGATATGCCGCAGCACATGTTTGATAAACCGTTGCAAAACGACGACGGCCCTCCCACtcaacagcagcagcaacagcaacaacaacaacagcaggCGTTGCGTGAACGTGATATGGTCCTACAACACGAGAGCGATACGTCGCAACCGCCTTTACATCCACCTCAAACAGAACCGCCCAAAGAAACAACAAAAAGGGCACCGCCGTCAGAAGCTGAGCTGCCACTTCCCAAACGACCGCCCAGCTTGCAGGCCAATAAACACTTGTGCCACGTGTGTAATAAGAACTTCTCGTCCAGCTCGGCCTTGCAGATACACATGCGTACACATACGGGAGACAAGCCGTTCCGTTGCACCGTCTGTCAAAAGGCCTTCACTACCAAGGGGAATCTAAAGGTTCACATGGGCACTCATATGTGGAGCAACGGAGCCTCGCGGCGAGGGCGCCGCATGTCCCTCGATCTGCCACCCATTCCCATGACACCCAAGGATTCAGAATTTCTGCAGCGGAGGCCCGATCTCTTCTACCCGTACCTCCCGGCTCCATTCCTTAACGGCATGCAACAAAAgCTAAACGAGATCTCAGTGGTACAGAATCCGCAAAATGGTCTTGGCGGCGGTAAATACAGCGGCCTGCTGGGCTTCGGTTACCCGCCGCCGGACTCGATGCGTTCGCAAGCCGGAACGCCCGAGAGGCCGACGTCCAGGCCGCCAAGTCGGGAACCAGAGAGACTTTGGGACCTGCACTTCGAGCGGAAGTCTGGCGGGGAAGCGCCTCGCGAGGAGCTGATGCCACCAAGTCGAGAAGGGCTAGCCGCCTGA
- Protein Sequence
- MAALLINSAFQQCFVVTGDTPDEEVQQITSDEDLQYGDALMCPRCQEQFTDVQEFLTHKAECALKAKKHEEPAHSDPEDMVVSEDDEMDDETGGKRLERMRRHRQDAANNNSVDEGSPDDESSARIGFPFPVPTPGGHVTLEALQNTKVAVAQFAATAMANNENNETALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLSINKPGSPSSTTQENDSEPPMAESPPPPQIIPISREPTPASLPPPISQPLTQQPPITPPTHEISVPPCLPPQIQPPLCSISSSLASTIITHNNEPPPSMDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSSKFPHIKMNPNPIPEHLDKYHPPLLAQLGQQPSLSPGGPPHPPHMGFPPSHPFPPTSLPMYRPPGPPPDMMNNRLPPSPHRQPEAAPRLFPPHPFHLLKREEQDVPENLSKPIRSPTPTPQESRCKIEPMEEKREFSHEIKNNLSEITPKQEMIDTDIEPEQEPERFPSPVPYDECSIDSKYSNEDMLENRSNGGDQSENIQDEPENLSNKSSSITLPLSISTGQRLPANFPFGHAASSPPSSTSSGSLGPFPTTPLADPARDPAIYANLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPPLPNSMHPFLSQGFQVPGLSPLGPGGFPINMKLGDYDKDMKSEQDYNMDDDDDDDDDMMSNSEHNLSFTTSPGEQNHLGQMNVAASQLSASGLSYSTEDLCSGRTAPSTSPVQNGEKSPTQSGLTSPGSSEIRSSPNHMSTPVQVPRPPSSQQPTSPTPSESNSLGALDLTPKTIQQPPTSPGPHPGPPSLFSSFGLLPPGQGNTPLISSALSSLTSSVLTSTAFSPLRLAVGPGGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCSVCDRGFSTKAGEECVCGQRRIQDEAEQGRAGKRKPPSSLRRNIPSKFPLPMSPGYATALHWSSLAGNMKQHMLTHKIRDMPQHMFDKPLQNDDGPPTQQQQQQQQQQQQALRERDMVLQHESDTSQPPLHPPQTEPPKETTKRAPPSEAELPLPKRPPSLQANKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVVQNPQNGLGGGKYSGLLGFGYPPPDSMRSQAGTPERPTSRPPSREPERLWDLHFERKSGGEAPREELMPPSREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01400627;
- 90% Identity
- -
- 80% Identity
- -