Tlur022999.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- Rfx2
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010001423.1:275858-294915[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.75 8.7e+03 -1.7 0.3 23 39 68 84 48 108 0.60 2 2 8e-38 9.3e-34 116.8 0.2 3 78 366 441 364 442 0.97
Sequence Information
- Coding Sequence
- ATGCATTCACGACTGACTTTTTTGGATCAACAGCAGCAATTACATGACCATTTGCAGCATTTAAATCCGTCCGCAAACTTAAATAAAATTTTTGAAAAGTGTTGCTGTAATAATCCTCGTGCTCTAAGTGGTCATCAAAATAATCACTTGTTACAACAAACGTATCAGGCCATAAAACCACATCACCACCACCACCATCATCATCATCACCATCATCACTACCAGCAACATCAACAACAACAACAACAACAACAGCGCCAATTGCAATTACATCAACAGCAGGCATTTAATCAATCCCTGCAACAGCGTCTACATACTCCAGCAACTACATTGTCCGCTTTGTCATCAACTCAACAACAAACCAAATCACAATCATCACAAAATAAACAAAACTCCATTGTCCAACGTTTGCACCAACAATATCATCACCAGACGACACTCGTTGCTACAGTATCATCAAGTTGTTCTGCTGCAGTTGCAGCATCACCTTCGACACACTTGTCGTTTTCACCGCCTGCTCCTACAATACCACCACCTGCTACGGCCGCTACTACTCCTGCCTCGGCAATTTCATCGCCAATTGCACCAACAGCTTCAACAATGTATCGACGTCATAACAATTTATCGTATTGCGGTGTTTCAAACCAAGATGCTGCTCAAAACTATCAAGTACAATACGTGGACACGGACATGTATCATAGCAATTCAAGTCAATCACAAATGGCATATCCTTTTTGTCCCATTGGAGATTATCAGACTGGTGGGCAGTCCTACTATTCTGCAACATCAAACACAAATTACTCCTCAGCTTTGCCTCTGAACACATCAACACATGCATCCACGTTACCGTACATAATTCCAGTGGAGGAGAGTCTGCTATTAAATACATCCTCACAGTCCCATAGTAGAGATTCATCCCACAGCTTAACGGAAGTTGCTTTCATACAGGAAAATCATAATTCATCACAAACACCAACTTCCACAATCGCGAATTCTACGAATATCGGAATAAATATACCCACAGGGAATAGCACTGCCACTGTCTCTCCAGAACACAATCACAATAGTTTAGGAAACACAAACAAAATAGCATCAGCCACTATTAAATGGCTCTCACGGAATTATGAAACTGCGGAGGGTGTCAGCCTGCCACGTTCGACGTTGTATAATCATTACATGCAGCACTGCAACGAATGCAAAATAGAGCCCGTAAACGCTGCTAGCTTTGGCAAGTTGATACGATCAGTATTTTCCGGACTGAGAACACGACGTCTTGGTACTCGCGGAAATTCCAAGTACCATTATTACGGAATACGCATCAAACCAGAATCGGTACTTCATCAAATTATAGACGAGAAGCCAACCTTTCAAACACAAACACCAAGTGCTGCTCATGTAGCACAGAGTCAAAATCTAATGACACCCTGCAGTTCAAGTCCAATAGCTGGAACATCCGGTACAATACACTCCATTGCCACCTCCAGCAATATGATTCACAATAGCCGATATTCCAGAAAATTACACTCCTTTAAGCCCGAAGAACACGAAACTTGTGAGAAATTTCTTGGCGACGGCTCCACAGCAATGCCAACATTTCCTACAATCGATCTGGATAACACTTTCGACAGTGAGATAAGCCAAGAGGATGTCGAAACATTTCGTTCATTGTATCGTGAGCACTGTGAGAATTTTCTGGATGCTGTTCTAAATCTAGAATTCGATAACATTGAGTTTCTATGGCGAGATTTTTGGCGCGAGAGCGGCAGCATCGATGAATGTGCCGAAGAGGAAAAGTATTTGAGTAAAACAAAATTATACTTGATGTGCCACTGTGCGGGTGTTCAAAAATTCGTGCGGGAGGTTGACTATCAATTTTATCAGAATATCGTAGATGTCATTATACCAGATGTCTTAAAATCAATTCCGAACTCTCTAACCCAAGCTGTTCGCAACTTTGCTAAGAATATGGAAATTTGGTTATGCGAATCAATGATTGGTGTTCCTGAGCGCATGTTGCAAATTAAATCATCAGCTGTATCCGCCTTTTGTCAAACATTACGTCGCTACACGTCTCTCAATCATCTGGCACAAGCAGCCAGAGCTGTGCTCCAAAATAGCGGCCAAATAACGCAAATGTTGAATGATTTGAATCGCGTAGACTTTCACAACGTTCAGGAGCAAGCCGCTTGGGTATGCCAATGTGATTCAGCCATAGTGCAGCGCCTAGAAAATGATTTTAAGTCCGCTTTGCAACAACAAAGTTCATTGGAACAATGGGCTTCTTGGTTGCAGGTTGTCGTCGACTCCGCCTTGCAAGACTATTGCGGAAAACCGGACTACACGAAGGCTGCTCGACAATTTCTTTTAAAGTGGAGTTTTTATAGCTCAATGATAATTCGAGACTTGACACTAAGGTCTGCGTCCAGTTTCGGTAGTTTTCACTTAATACGTCTACTCTATGATGAATATATGTTTTACCTGATCGAACATAAAATTGCGGCAGCCAATCAGAAAACTGCTATAGCGGTTATTTGTGATCTCAAGCACAAGGAGATGGAATTTGATTTTGGTTATCAACTGGATTGCATAGGTGCCGAAAATGTTGGAACTGAACGTGCACCCAAGCGATTGAAACATGAATGA
- Protein Sequence
- MHSRLTFLDQQQQLHDHLQHLNPSANLNKIFEKCCCNNPRALSGHQNNHLLQQTYQAIKPHHHHHHHHHHHHHYQQHQQQQQQQQRQLQLHQQQAFNQSLQQRLHTPATTLSALSSTQQQTKSQSSQNKQNSIVQRLHQQYHHQTTLVATVSSSCSAAVAASPSTHLSFSPPAPTIPPPATAATTPASAISSPIAPTASTMYRRHNNLSYCGVSNQDAAQNYQVQYVDTDMYHSNSSQSQMAYPFCPIGDYQTGGQSYYSATSNTNYSSALPLNTSTHASTLPYIIPVEESLLLNTSSQSHSRDSSHSLTEVAFIQENHNSSQTPTSTIANSTNIGINIPTGNSTATVSPEHNHNSLGNTNKIASATIKWLSRNYETAEGVSLPRSTLYNHYMQHCNECKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPESVLHQIIDEKPTFQTQTPSAAHVAQSQNLMTPCSSSPIAGTSGTIHSIATSSNMIHNSRYSRKLHSFKPEEHETCEKFLGDGSTAMPTFPTIDLDNTFDSEISQEDVETFRSLYREHCENFLDAVLNLEFDNIEFLWRDFWRESGSIDECAEEEKYLSKTKLYLMCHCAGVQKFVREVDYQFYQNIVDVIIPDVLKSIPNSLTQAVRNFAKNMEIWLCESMIGVPERMLQIKSSAVSAFCQTLRRYTSLNHLAQAARAVLQNSGQITQMLNDLNRVDFHNVQEQAAWVCQCDSAIVQRLENDFKSALQQQSSLEQWASWLQVVVDSALQDYCGKPDYTKAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLYDEYMFYLIEHKIAAANQKTAIAVICDLKHKEMEFDFGYQLDCIGAENVGTERAPKRLKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137719;
- 90% Identity
- iTF_01074181; iTF_01398174;
- 80% Identity
- -