Prud011469.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- Rfx2
- Assembly
- GCA_956483635.1
- Location
- OY101447.1:200307228-200335638[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.43 7.5e+03 -0.9 0.3 12 36 77 101 62 109 0.61 2 2 7.7e-38 1.3e-33 116.9 0.2 3 78 355 430 353 431 0.97
Sequence Information
- Coding Sequence
- ATGCATTCACGACTGATTTTGGAACAAAAGCAGCAAATACATGACCACTTGCAGCATTTAAATCCGTCGacaaactttaataaaatttttgaaaagtgttGCTGTAATGTTCGAGCTTTAAGTGGTCATCAAAATCAACCGTTTTTACAACAAACATATCAGGCAATAAAACCACcacatcatcaccatcatcatcatcatcaccaccatcatcatcattatcagcaacatcaacaacagCGCCAATTGCAACTGCATCAACAGCAAATCTTTAATCAACAACAATCAACAATTCAACAGCACTTACATTCTCCAGTGTTGTCCGTTTTATCATCAACTCAGCAACAAACAACAACATCACAAACAcaaaataataatcaaaattCTATAGTCCATCGTTTACAGCAACAGTATCATCATCAACAGGCACTCGTTGCTACAATATCATCTAGTTGTTCTGCTGCAGTTGCATCATCTCCTTCTGCATCACACTTGTCGCTTTCACCACCTGCTACTGTTACTGCTGCTTCTGCAATTTTATCGCCAATTGCATCAACGGCTTCAGCAATGTATCGACGTCATAACAATTTATCATATTGCGGTGTTTCAAATCAAGATGGTGGACAAAGCTATCAAGTTCAATACGTGGACACAGAGTTGTATCACAGTAATTCAAGTCAATCACAAATGGCATATCCTTTTTGTCCCATTGGAGATTATCAGGCTGGTGGCCAGTCCTATTATTCTACAACATCAAATACAAACTACTCCTCAACTTTACCTTTGAATACATCAGCCCATCCATCCACTTTACCGTATATAGTACCGGTGGAAGAAAGTCTTCTATTAAATACATCCTCACAGTCCCACAGCAGAGATTCTCCACAGAGTTTAACAGAAGCTGCATTTATACAGGAAAATCACAGTTCATCACAAACACCAACTTCTACAACTGCCAACTCcataaatattgcaataaaTGTACCGGCAGGAAATAGCACTGGAAGCACCTCTCCGGAACACAATCATAATAATTTCggaaacacaaacaaaatagCAGCAGCGACTATTAAATGGCTCTCGCGGAATTACGAAACGGCGGAAGGTGTCAGCTTGCCGCGTTCGACATTGTATAATCACTACATACAGCATTGCAACGAATGCAAAATAGAACCCGTAAACGCAGCTAGCTTCGGTAAACTGATACGATCCGTATTTTCAGGATTGAGAACTCGTCGTCTTGGTACTCGTGGCAATTCCAAATACCACTATTACGGAATACGTATTAAACCAGAATCGATACTTAATCAAATTATTGACGAGAAGCAACCATTTCAAACACAAATTCCTAGTGCTGCTCATATGGCTCAAAATCAAAATCTAATGATTCCGTGCAGTTCAAGTCTAATTGCTGGGGCATCTGGTACAATGCATTCTGTGGCCACCTCCAGTAATATGCTTCACAGTAGTCGCTATTCCAGAAAACCGCTTTCCTTTAAGCCTGAAACACATGAATCTTGTGGAAAATTTCTTGGCGACGGCTCTGGAGCAATACCAACATTCCCTACAATTGAACTGGATAACACGTTTGATAGTGAGATAACTCAAGAGGATGTCGAAACATTTCGTTCAATGTATCGTGAGCACTGCGAGAATTTTTTGGATGCTGTTTTAAATCTAGAATTTAATAACATTGAGTTTCTGTGGCGAGATTTTTGGCGTGAGAACAGCAGCATCGATGAGTGTGCCGAAGaggaaaagtatttaaataaaacaaaattatatttgatgTGCCACTGCTCGGGAGTTCAAAAATTCGTGCGAGAGattgaTTATCAATTTTATCAGAATATAGTAGATGTCATTATACCGGATGTCTTGAAATCGATTCCGAATTCTCTTACCCAAGCTATAcgcaattttgctaaaaatatggAAATTTGGTTATGCGAATCAATGGTTGGTGTACCTGAGCGCATGGTACAAATAAAATCATCAGCTGTATCCGCCTTTTGTCAAACACTACGTCGCTATACGTCCCTCAATCATTTGGCTCAAGCAGCCAGAGCTGTACTCCAAAATAGTGGTCAAATAGCGCAAATGTTGAATGATTTGAATCGCGTAGACTTTCATAATGTCCaggaACAAGCTGCTTGGGTCTGCCAATGTGATTCAGCAATAGTACAGCGCCTAGAAAACGATTTTAAGTCTGCTTTGCAACAACAAAGTTCTTTGGAACAATGGGCAGCTTGGTTGCAGGTTGTTGTTGATTCGGCCCTACAAGACTACTGTGGAAAGCCAGACTATACAAAAGCTGCACgacaatttcttttaaaatggaGTTTTTATAGCTCAATGATAATTCGAGACTTGACACTCAGATCTGCGTCAAGTTTCGGTAGCTTTCACTTAATACGACTACTCTATGATGAATACATGTTTTACCTGGTCGAACATAAAATCGCGGAAGCCCATCAGAAAACTGCCATTGCTGTTATTTGTGATCTTAAgCACAAGGAAGTGGAATTCGATTTTGGCTATCAACTGGAATGCATTGCGGCAGATAGTGTTGGTATTGAACGTGGACCCAAGCGATTGAAACACGAATGA
- Protein Sequence
- MHSRLILEQKQQIHDHLQHLNPSTNFNKIFEKCCCNVRALSGHQNQPFLQQTYQAIKPPHHHHHHHHHHHHHHYQQHQQQRQLQLHQQQIFNQQQSTIQQHLHSPVLSVLSSTQQQTTTSQTQNNNQNSIVHRLQQQYHHQQALVATISSSCSAAVASSPSASHLSLSPPATVTAASAILSPIASTASAMYRRHNNLSYCGVSNQDGGQSYQVQYVDTELYHSNSSQSQMAYPFCPIGDYQAGGQSYYSTTSNTNYSSTLPLNTSAHPSTLPYIVPVEESLLLNTSSQSHSRDSPQSLTEAAFIQENHSSSQTPTSTTANSINIAINVPAGNSTGSTSPEHNHNNFGNTNKIAAATIKWLSRNYETAEGVSLPRSTLYNHYIQHCNECKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPESILNQIIDEKQPFQTQIPSAAHMAQNQNLMIPCSSSLIAGASGTMHSVATSSNMLHSSRYSRKPLSFKPETHESCGKFLGDGSGAIPTFPTIELDNTFDSEITQEDVETFRSMYREHCENFLDAVLNLEFNNIEFLWRDFWRENSSIDECAEEEKYLNKTKLYLMCHCSGVQKFVREIDYQFYQNIVDVIIPDVLKSIPNSLTQAIRNFAKNMEIWLCESMVGVPERMVQIKSSAVSAFCQTLRRYTSLNHLAQAARAVLQNSGQIAQMLNDLNRVDFHNVQEQAAWVCQCDSAIVQRLENDFKSALQQQSSLEQWAAWLQVVVDSALQDYCGKPDYTKAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLYDEYMFYLVEHKIAEAHQKTAIAVICDLKHKEVEFDFGYQLECIAADSVGIERGPKRLKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00435267; iTF_00741591; iTF_00899265; iTF_00900283; iTF_01176683; iTF_00759834; iTF_01398174; iTF_01074181; iTF_01399209; iTF_01109087;
- 90% Identity
- -
- 80% Identity
- -