Tgro039385.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:146541369-146548069[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1 5.4e+04 -7.7 15.8 51 113 12 71 1 126 0.67 2 5 0.21 1.1e+04 -3.1 3.6 235 280 132 175 123 185 0.57 3 5 0.22 1.2e+04 -3.2 6.6 22 84 227 288 222 301 0.65 4 5 2.4e-116 1.3e-111 374.3 26.8 1 299 356 652 356 653 0.93 5 5 0.071 3.9e+03 -1.6 3.7 220 245 681 706 656 727 0.47
Sequence Information
- Coding Sequence
- ATGTCAGTGGAACAAAAATTAACTGATAAAAATGTTGTGTctacaacaacatcaacaacaaccgCAAACTCGAGTTCAACCAAATCTAATAAAAAGAaccaaaacaacaacaacaacagcaagagtagtaagaaatttatcaaaaaagcattgaaaatttcaaaaaataaaaagcatgcaAACATTACTAATGccaacaacaagaacaaaaactacaacaacagcaacactACTAACAGAAGCAGCGGCAACAACAATGTTGAAGTGGCAAACGATGAAATCATCGAGGAGTTGTTTGATTTTAGCGATAATGATATAAAAGAGCTCGAccatataaaaaacaaagaCGAAATTAGCAAGAACAATAGCAAATCAGTTGCTAGTGCAGAGCTTTTAACTGAAGGCAGCGATAAATTAAAGGAAAATGAGGAAGTTGATAAAAATTCCGAggagaaaatgcaaaatatgacaattaataataatataaccGATAATCAAAATAACGATGAAGCTGAAAGAAAACAAGAACAACAGGTGGAACTAGTATTGTTATCTTCGCCTAATGATAACATTAATAAACAAAACGAAGACATCCCAAAAGACAATGAATTAGTCACGACGACAATTTcatcaataacaaataacataATTAGCGTAGAAGGAAATGTGGATAAAAGCGAAATCGATAAAAGTCAACAAGAAGTAGAATCATTTGAATCAGAAAAAAGCACTGTGAAGAAAGAAGAAATTAACAATGGCTCTAGTAGCGCTATCGTACAAATCTCCAATAGTTCCATTGTTAGCGAGAATTCATCGAGCTCTGAGGCTGACAACAATGACAACAAATTGCCAACATCTTCAGACATAAAGTCTGTGAAAGCGAACGATGCTTCAGAGTCGTCGCCGTTGTCTTTGATTGATATTAAAGAAGTTGCTTAcagcaaagaaaattgtaacaataatctaaataatgatgatgatggtaATGATGATGAAAATGATAATGAGTGTGCCGAACCAGATGATGAACTCTTAGTACAATTCCTCGATGAAGCCAATCAGATTGCTGAGGCTAGATTAGCTGCTAGACGGCACGCTAGAGCGGAAGCTCGGGAAATACGTATGCGAGAATTAGAACGCCAGCAAAAGGAACAAGAATCTAATGCGGATCGTGTTTTCGATATGCATTCAACCGTAACTGGAATTACGCCATTGTCACACATGCGTCTGGGCTTAGGGAGTTCACCCGTTACAGGTTTACTAAATTCGACAAGAGCCAACTCCATGTCATCGAGACGCAGCAGTGAAGATTCTTTAGAAGAGGAAGGCCGCAGTTTAAGGGATATACGTCATGAGTTAAAgGATGTTGAAGAACGGTTTCGCAAGGCTATGATAGCAAATGCACAGTTGGATAATGATCGTGCCTCACAAACGTATCAGATACAGTTGCTAAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAGCGTGAATGCAAGGAAAAGACACGCGATTGTAATGCCTTGAAACGATCATTGGATAAACTAACCGAAGAGCTTAAATTGGTGCAGGGTCAGCTAAATGAGCGTGACACACTGATAGCAGAACAAGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCACTGTTGAAAATGCACAATTATTGGGCTCGGTACAAGGGTCGTTAGATGTGCGGCTTAAGAAATTCAGCGAAGAGAAACAACAACTGCAGTCCGAAGTCCAGCAGTTGCAGGAACAGTTAGAATCATATAAAAGTCAGGGCAAAGGTCGAGGTAAAGGCAATTATTCTAATGGTCCTTTAGGCTCCGATGATGATGATTATGAAGCTCAAAgagAAGCCAATAAAATCATAATGGACTATAAGTATAAGTTACAAAAAGCTGAACAGGAAATTGCAAGTCTTCAATCAAGCTTAGCACGTTCTGAAACGCAGGTTATACGTTACAAAAGTACTGCTGAAGCTGCCGAGAAAGCTGAGGCCGAACTTAAAATCGAAAGAAGGAAACTTCAAAGAGAGAATCGCGAAGCAATGGAAAAGCTTGAAGAGCTAGAAACATCAAATAATCATCTTCTGAAACGTTTGGACAAATTAAAGAATGCCAAAAGCGCTTTACTAAAAGATCTCTGA
- Protein Sequence
- MSVEQKLTDKNVVSTTTSTTTANSSSTKSNKKNQNNNNNSKSSKKFIKKALKISKNKKHANITNANNKNKNYNNSNTTNRSSGNNNVEVANDEIIEELFDFSDNDIKELDHIKNKDEISKNNSKSVASAELLTEGSDKLKENEEVDKNSEEKMQNMTINNNITDNQNNDEAERKQEQQVELVLLSSPNDNINKQNEDIPKDNELVTTTISSITNNIISVEGNVDKSEIDKSQQEVESFESEKSTVKKEEINNGSSSAIVQISNSSIVSENSSSSEADNNDNKLPTSSDIKSVKANDASESSPLSLIDIKEVAYSKENCNNNLNNDDDGNDDENDNECAEPDDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGSSPVTGLLNSTRANSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLTEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVTVENAQLLGSVQGSLDVRLKKFSEEKQQLQSEVQQLQEQLESYKSQGKGRGKGNYSNGPLGSDDDDYEAQREANKIIMDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399449;
- 90% Identity
- iTF_01399449;
- 80% Identity
- -