Tfer010063.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999963.1:174511627-174518304[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00036 0.041 15.7 0.1 1 23 139 162 139 162 0.97 2 12 0.0061 0.7 11.8 3.3 2 23 211 233 207 233 0.88 3 12 0.011 1.2 11.0 1.4 1 23 361 384 361 384 0.93 4 12 0.46 53 5.9 3.9 2 23 434 456 433 456 0.90 5 12 0.015 1.7 10.6 0.1 1 23 559 582 559 582 0.91 6 12 0.0012 0.14 14.0 2.4 2 23 633 655 633 655 0.97 7 12 4.6e-05 0.0053 18.5 0.9 2 23 771 793 770 793 0.96 8 12 0.00016 0.018 16.8 0.1 1 23 842 865 842 865 0.95 9 12 0.0028 0.32 12.9 1.4 2 23 915 937 914 937 0.95 10 12 0.093 11 8.1 2.2 1 22 1012 1033 1012 1035 0.90 11 12 1.2 1.4e+02 4.6 0.4 1 20 1087 1106 1087 1108 0.94 12 12 0.04 4.6 9.2 0.0 2 23 1188 1210 1187 1210 0.95
Sequence Information
- Coding Sequence
- ATGGACAATTTAGAGCCTTGGAATATGTTTAGCAATGAGTTAATGGcagatgaagaaaatgtaaatGATATTGAAGCGGGTGGAGTACGGGATAAAAATGTGTCGTTTCCTATTCCTTCACCGGTACAAAATATGCATGTTAAAGAAGAACCACAAGAGATATTCGATGATGACAATGACAATGTTCCACTTCACTTCCTTGCAGGAGGAAACAATAGAAGTTACAATAATAACGACATCCAAATTAGAAACACCGAAGACGATAACGCTCTTTTCGACTTTGGCTTAGAATCATCAAATTCCCAAAATcgaacttttttcaataaatcgaCGGCGGCCGAGAAAGATTTTCCCAAGTTAGAGTCAGAGGACAAATACTACAATTCCATGATTAAATTTGAAGACgctataatttatatatgtcCAGCTTGCGGTCATGAATTTAGCTCTCAAGATGCTTGGAAAAATCACTTGAACGTAATTCATTTTTACAATACACGTCGCGGtctaaattttatacaaatcgACAAACTATACCACGAATGTATGGAATGCCACAAACGTATCGCCATGCATAGCATGGAAAACTTACTTAAGCATAAATTTACACATCTTCCCTATCGGTGTAGCAAATGTATGGTGTGTAATAGACAGTATAAATATCGGCAAGATCTTATGGTACATTTGCGTATGACCCATCGTGacgatttaatagaactttTGAAAAAGGAACATAAAAGTTCTAAAACCTCCAATTCTCAACCACAAACTATACGCTCAATATTGAGCAGAACAGATGGTAGCACCAATAGACCAACTATTTCTATTAGCACCGTTAAGGAAAATGCTAAAGATTTATTCGATAATATAGAAGTGAAAAATGAACTAATTAATGAAGATGATGATACAATGGGCGAAGATAGTCAACCACCGCCAGTAAAAAGACCCGCTAGAGATTTACCCGCCTTTCTTGAAGATGGATCTACAAATGGTTCAGCTAGCGACCAGCCAATGACAAGTGGATCTAATAAAGCCGTGGAAGTAGATGAAATAGATGTTTCGCTTGAGGAATATGTTTTGTTCACATGCCCACAATGTGGCACGGAGTGTGAAACGCAAGCCCAATGGCATCAACATATCGAATTTGTACATGAATTTGGCACGCGAAGGGGATTGAATTTTCGAGAGTTGCTTAATCAACAAGCTCAGTGCATGGGTTGCAATATGATCTTGTCAAACACTTCAATACGTAATCTTCAAGTACATAAATTCGGTCACTTACCATACAAACAATGGATGAGTTGTAAACTTTGTTTTACCTGCTTCAATTCAAATCATGAGATTATTAAGCACTTGGCAGATAAGCACCATTTAGTGTCGGATATCGTTAAGCCAGCTCCAGTCGCAGAGGCAAATAACGACGATGAAAGTCAAGAAGGATTTGGTTTTGATAATGTTGGCGATTCCTATGGAGGTTTTGGTGATGATAATGATTATGGTGTTGGGGGAGTTGGAAGTGGTGGAGGTGTTAACAGTGGTGGCGGTGGCAGTGGCAGTGGCAATGGCAATGGAAATAGTGGCTATGCAGCATCCGAAAGAAAAAATCCAGCATCTGGTTCAGACTCCCAGCCAATAAAGTATGATGAACGTGATGTGTTCGAACAGCATATTACATACATTTGCCCGGCGTGCGGTAAAGAATATAACGATAAAAAAGTCTGGCGAAAACATATTGTAGAAGTTCACAAGTTGGGCgaactggaaaatttaaatttcgaaaGTTTAAATGATCGTCAATTGAAATGTAGAGAGTGCGACAAGATTATAACGAATGCATATGGTATACAAAATGCCCAACAGCATCGTATGACACACTTGCAATATAAATCGTTTGCAAAATGCCGTTTGTGTCGAAAAACTTATACTGACCGCAAGGGCTTAATCAAACACTTGAGAAACTCCCATAAACTGGGTGCTCGTATAGGTTTTGGTCCAGCTCATCCAGCATCAGTAACAACACCAGCACCAGCATCAACTACAAATTATACTGGCTCAAGCAATAGTTCCACCTTTAAACCATTTGTCAAAAAGCCATATAAGATTGCTCACTATCCACCTAAAGAAATAGTTAGATCATCAAATTACACTTATGAAATTGTACATTTGATCGAAGACgacgacgatgatgatgatgtgacTATTACCGGTGGTTATGACTTTGCCAAAGGTGATgctcatttatataaaaacaattcaccTTATAATACGCCTTCTAAAAGAAGCACCAATATGGAACAGATAACCAGAAATAAATGTGTAGACTGTGGTACTATATTTCCTACTCAACAGTCCCTGCAACATCATATTCGGCAAGAACATGAATTTGTTGATTATCGAAATTCGCCGTCTACTCAGGCGactcaaaatgaagaaaaatcaaaCGACACTGATGATTTATTAGTGCCGAGTCGGAATGCTGATGTCCAACCCGAAGAACCCACAACAATGgaatgcaattttatttatctatGCCCCCAGTGTGGTTTGGAATTTCGTTCACAAGTAAAATGGAGACGTCACATTAACATTGAGCATAACTTTGACCAACGGGTCTCGTTGGGCTTCAGGCCTTTGGACAAATTTCGTTTTCAATGCAGAATTTGTAAAGACACAATAACAAGTTCGAAACTCAAGGGTTTGCAGGATCATAAATTCAGGCATTGTCCTTATAAACTCTATCTGAAATGCCTACTGTGCGGCCAATCGTACAATCACAAACCCAATATGCTAGCTCATTTAAGGCAAAAACACAATATTGTTGAGGTAATGGAAGGAGGGACGGTATCATCTTCCAATGACAATACGCAACAAAGACATTCAGCTAATTCTaacaataaagattttaatGATGCTCCAGCCAGACCGATACGAAATGCCGATCCTTCCTACAATAACGCAAATCGACCACCTGGCCTAAAAACAGTTGAAGATGTTATATCCTTTCACAACGCCGTCGATCACGAAACTATTACGTACCACTGTCCGTCGTGTAATCAAAGCTTCGATTCTCATGTATTTTGGCGCAAACATATTGTAGACGAGCACAATTTGAATAGCAGAGAAGGCTTGAACTTCCGTCAATTGGATGAACATCACTACATTTGCTTGCAATGTTACAAACGTGTAACAGTCACTCACACTAAGGGCGCAATCGGCCAACTGCAGTCTCATAAGTTTAGGCATTTGCCATACAAGTCATTCAGTTGCACTGCCTGCGAGGGAGAATTTGTACGCAAGCAAATGTTTTTCAAACACTTGGACAGAAATACCAACAAATGCTCTGGCATAAATCCTGATATCAATTACACAGATTCTGTGGACAATAGCACAGCTGTAAGTAATGAAGATGAGGGAAATGATGATCTAAGTTCGACATTGGCTGAGAAAGCTAGTTCTTCTTCAACAAAATTCTCTTGGCCCACGCGCTCCTCACTGCCAGTCCAGCCGACAAGTGCTGGCAATAGTGAATCAATTTCAGATAATCAGGGTTGCTTCACTTTAAACTGTCCCCAGTGCGGCGCAGATTTCGAAACGACGCGCGGTTGGCGGGAACACATAAATATCGAACACAATCTCAACAATAGAACTGtattgaatttcaaaaaaatcggtGCCAAACTACACCTTTGTTTGGAATGCAACGAACAAGTCAATGGCAGGAAACTCCGCGATCTTCAAGTACACAAATTTAAGCACTTACCCTACGGTGCTTATTTGCACTGTCGCTTTTGTTCTATGAAATATTTCCACATCAGCAATATGCaagagcatttgaaaaataaacatcCTAATATGGTGcagaaaatgaaaaactatgAAGATGATTGCGGTACTTTAGATGAAGACGATGATGCCAATGTGGATGGCGATGGCAATGATGCCGATGCCGATGTCACGCTGGACGGGGAGGCAGATGACAGTAATACCGGCTTGGAAGATGGAATCGATATAGATTTGTTAGAGGCCGAAGCCGAAATTGAAGAAGTTGACCCTGATAATGTAGAATCTGAGGAACAATATCTCTTAGGCTAA
- Protein Sequence
- MDNLEPWNMFSNELMADEENVNDIEAGGVRDKNVSFPIPSPVQNMHVKEEPQEIFDDDNDNVPLHFLAGGNNRSYNNNDIQIRNTEDDNALFDFGLESSNSQNRTFFNKSTAAEKDFPKLESEDKYYNSMIKFEDAIIYICPACGHEFSSQDAWKNHLNVIHFYNTRRGLNFIQIDKLYHECMECHKRIAMHSMENLLKHKFTHLPYRCSKCMVCNRQYKYRQDLMVHLRMTHRDDLIELLKKEHKSSKTSNSQPQTIRSILSRTDGSTNRPTISISTVKENAKDLFDNIEVKNELINEDDDTMGEDSQPPPVKRPARDLPAFLEDGSTNGSASDQPMTSGSNKAVEVDEIDVSLEEYVLFTCPQCGTECETQAQWHQHIEFVHEFGTRRGLNFRELLNQQAQCMGCNMILSNTSIRNLQVHKFGHLPYKQWMSCKLCFTCFNSNHEIIKHLADKHHLVSDIVKPAPVAEANNDDESQEGFGFDNVGDSYGGFGDDNDYGVGGVGSGGGVNSGGGGSGSGNGNGNSGYAASERKNPASGSDSQPIKYDERDVFEQHITYICPACGKEYNDKKVWRKHIVEVHKLGELENLNFESLNDRQLKCRECDKIITNAYGIQNAQQHRMTHLQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGARIGFGPAHPASVTTPAPASTTNYTGSSNSSTFKPFVKKPYKIAHYPPKEIVRSSNYTYEIVHLIEDDDDDDDVTITGGYDFAKGDAHLYKNNSPYNTPSKRSTNMEQITRNKCVDCGTIFPTQQSLQHHIRQEHEFVDYRNSPSTQATQNEEKSNDTDDLLVPSRNADVQPEEPTTMECNFIYLCPQCGLEFRSQVKWRRHINIEHNFDQRVSLGFRPLDKFRFQCRICKDTITSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMLAHLRQKHNIVEVMEGGTVSSSNDNTQQRHSANSNNKDFNDAPARPIRNADPSYNNANRPPGLKTVEDVISFHNAVDHETITYHCPSCNQSFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFSCTACEGEFVRKQMFFKHLDRNTNKCSGINPDINYTDSVDNSTAVSNEDEGNDDLSSTLAEKASSSSTKFSWPTRSSLPVQPTSAGNSESISDNQGCFTLNCPQCGADFETTRGWREHINIEHNLNNRTVLNFKKIGAKLHLCLECNEQVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHPNMVQKMKNYEDDCGTLDEDDDANVDGDGNDADADVTLDGEADDSNTGLEDGIDIDLLEAEAEIEEVDPDNVESEEQYLLG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742345;
- 90% Identity
- iTF_01399016; iTF_01399928; iTF_01074939;
- 80% Identity
- -