Tlur005385.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- -
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010000215.1:905158-910623[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00031 0.03 15.7 0.1 1 23 139 162 139 162 0.97 2 12 0.0053 0.52 11.8 3.3 2 23 211 233 207 233 0.88 3 12 0.0092 0.9 11.0 1.4 1 23 361 384 361 384 0.93 4 12 0.086 8.3 8.0 3.0 2 23 434 456 433 457 0.91 5 12 0.013 1.3 10.6 0.1 1 23 570 593 570 593 0.91 6 12 0.0011 0.1 14.0 2.4 2 23 644 666 644 666 0.97 7 12 4.1e-05 0.004 18.5 0.5 2 23 781 803 780 803 0.96 8 12 0.00014 0.014 16.8 0.1 1 23 852 875 852 875 0.95 9 12 0.0024 0.24 12.9 1.4 2 23 925 947 924 947 0.95 10 12 0.081 7.9 8.1 2.2 1 22 1022 1043 1022 1045 0.90 11 12 1 1e+02 4.6 0.4 1 20 1097 1116 1097 1118 0.94 12 12 0.035 3.4 9.2 0.0 2 23 1198 1220 1197 1220 0.95
Sequence Information
- Coding Sequence
- ATGGACAATTTAGAGCCTTGGAATATGTTTAGCAATGAGTTAATGGCAGATGAAGAAAATGTAAATGATATTGAAGCGGGTGGAGTGCGGGATAAAAATGTGTCGTTTTCTATTCCTTCACCGGTACAAAATATGCATGTTAAAGAAGAACCACAAGAGGTTCTCGATGATGACAATGACAATGTTCCACTTCACTTCCTTGCAGGAAGAACCAATAGAAATTACAATAATAACGACATCCAAATTAGAAACACCGAAGACGATAACGCTCTTTTTGACTTCGGCTTAGAATCATCAAATTCGCAAAATCGAACTTTTTTCAATAAATCGACGGCGGCCGAGAAAGATTTTCCCAAGTTAGAGTCAGAAGACAAATACTACAATTCAATGATTAAATTTGAAGACGCTATAATTTATATATGTCCTGCTTGCGGTCATGAATTTAGCTCTCAAGATGCTTGGAAAAATCACTTGAACGTAATTCATCTGTACAATACACGTCGCGGTCTAAATTTTATACAAATAGACAAACTATACCATGAGTGTATGGAATGCCGCAAACGAATAGCTATGCATAGCATGGAAAACTTGCTTAAGCATAAATTTACCCATCTTCCCTATCGGTGTAGCAAATGTATGGTGTGTAATAGACAATATAAATATCGGCAAGATCTTATGGTACATTTGCGTATGACCCATCGTGACGATTTACTAGAACTTTTGAAAAAAGAACATAAAAGTTCTAAAACCTCCAATTCCCAACCACAAACTATACGCTCAATATTGAGCAGAACAGATGGTAGCACTAATATACCAACTATTTCTATTGGAACCGTTAAGGAAAATGCTAAAGATTTATTCGATAATATAGAAGTAAAAAATGAACTAATTAATGAAGATGATGATACAATGGGCGAAGATAGTCAACCGCCGCCAGTAAAAAAACCAGCTAGCGATTTACCCGCCTTTCTTGAAGATGGATCTACAAATGGTTCAGCTAGCGATCAGCCAATGACAAGTGGATCTAATAAAGCTGTGGAAGTAGATGAAATAGATGTTTCACTTGAAGAATATGTTTTGTTCACATGCCCACAATGTGGAACGGAGTGTGAAACGCAAGCCCAATGGCATCAACATATCGAATTTGTACATGAATTTGGCACGCGAAGGGGATTGAATTTTCGTGAGCTGCTAAATCAACAAGCTCAGTGCATGGGTTGCAATATGATCTTGTCAAACACTTCAATACGTAATCTTCAAGTACATAAATTTAGTCACTTACCTTACAAACAATGGATGAGTTGTAAACTTTGTTTTACCTCCTTCACTTCAAATCATGAGATTATTAAGCACTTGGCAGCTAAGCACCATTTAGTTTCGGAGATCGTTAAGCCAGCTCCAGTTGTAGAGGTAAATAATGACGATGAAAGTCAAGAAGCATTTGGTTTAGACAATGTTGGCGATTCCTATGGAGGTTTTGCTGATGATAATGATTATAGTGTTGGGGGAGGTGGAGGTGTTAACAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGCGGTGGCGGAGGCTGTGGCGGTGGCAGTGGCAATTCCAATGGCAATGGCGGCTACGGAGCTTCCGAAAGAAAAAATCCAGCATCAGGTTCAGACTCCCAGCCAATAAAGTATGATGAACGTGACGTGTTCGAACAGCATATAACATACATTTGCCCGGCATGCGGTAAAGAGTATAATGATAAAAAAGTCTGGCGAAAACATATTGTAGAAATTCATAAGCTGGGCGAACTGGAAAACTTGAATTTCGAAAGTTTAAATGATCGTCAATTGAAATGTAGAGAGTGCGATAAGATTATAACAAATGCATATGGTATACAAAATGCCCAACAGCATCGTATGACCCACTTGCAATATAAATCATTTGCAAAATGCCGTTTATGTCGAAAAACTTATACTGACCGCAAGGGTTTAATCAAACACTTGAGAAACTCTCATAAACTGGGTGCTCGTATAGGTTTTGGTCCAGCTCATTCAGCACCAGTAACAGCACCAGCACCAGCAACTACAAATTATACTGGCTCAAGCAATAGTTCCACCTTTAAACCATTTGTCAAAAAGCCGTATAAGATTGCTCATTATCCTCCTAAAGAAATAGTTAGATTATCAAATTTCACTTATGAGATTGTACATTTGATCGAGGACGACGACGATGATGATGATGTGACTTTTACCGGTGGTTATGACTTTGCCAAAGGTGATGCTCATTTATATAAAAACAATTCACCTTATAATACGCCTTCTAAAAGAAGCATCAATATGGAACAGATAACCAGAAATAAATGTGTAGACTGTGGTACTATATTTCCTACTCCACAGTCACTCCAACATCATATTCGGCAAGAGCATGAATTTGTTGATTATCAAAATTCGCCGTCTACTAAGGCGACTCAAAATGAGGAAAAATCAAACGACACTGATGATTTATTAGTGCCAAGTCGGAATGCTGATGTCCAACTCGAAGAACCCACAACAATGGAATGTAATTTTATTTATCTCTGCCCCCAGTGTGGATTGGAATTTCGTTCACAAGTAAAATGGAGGCGTCATATTAACATTGAGCATAACTTTGACCAGCGGGTCTCGTTGGGCTTCAGGCCTTTGGACAAATTTCGTTATCAATGCAGAATTTGTAAAGACACAATAACGAGTTCGAAACTCAAAGGTTTGCAAGATCATAAATTCAGGCATTGTCCTTATAAACTCTATCTGAAATGTCTACTATGCGGTCAATCGTACAATCACAAACCCAATATGCTAGCCCATTTAAGGCAAAAACACAATATTATAGAGGTAATGGAAGGAGGGACGGTATCGTCTTCCAATGACAATACGCAACCACGACATTCATCTAATTCGAACAATAAAGATTTTAATGATGCTCCAGCCAGACCGATTCGAAATTCCGATCCTTCCTACAATAACGCAAACCGACCACCTGGCCTAAAGACAGTTGAAGATGTTATATCTTTTCACAACGCCGTCGATCACGAAACTATTACGTACCACTGTCCGTCGTGTAATCAAAGCTTCGATTCTCATGTGTTTTGGCGCAAACACATTGTAGACGAGCACAATTTGAATAGCAGAGAAGGCTTGAATTTCCGTCAATTGGATGAACATCACTACATTTGCTTGCAATGTTATAAACGTGTAACAGTCACTCACACTAAGGGCGCAATCGGCCAATTGCAGTCGCATAAGTTTAGGCATTTGCCATACAAGTCATTCAGTTGCACTGCCTGCGAGGGAGAATTTGTACGCAAGCAAATGTTTTTCAAACACTTGGACAGAAATACCAACAAATGCTCTGGCATAAATCCTGATAATAATTACACAGATTCTGTGGACAATAGTACCGCTGTAAGTAATGAAGATGAGGGAAATGATGATTTAAGTTCAACATTGGCTGAGAAAGCTGGCTCTTCTTCAACAAAATTCTCTTGGCCCACGCGCTCCTCACTGCCAGTCCAGCCGACAACTGCTGGCAATAGCGAATCAATTTCAGATAATCAGGGTTGCTTCACTTTAAACTGTCCCCAGTGCGGCGCAGATTTCGAAACGACGCGTGGTTGGCGGGAACACATAAATATCGAACACAATCTCAACAATAGAACTGTATTGAATTTCAAAAAAATCGGTGCCAAACTACACCTTTGTTTGGAGTGCAACGAACAAGTCAATGGTAGGAAACTTCGCGATCTTCAAGTACACAAATTTAAGCACTTACCCTACGGTGCTTATTTGCACTGTCGCTTTTGTTCTATGAAATATTTCCACATCAGCAATATGCAAGAGCATTTGAAAAATAAACATCCTAATATGGTGCAAAAAATGAAAAACTATGAAGATGATTGTGGTACTTTAGATGAAGACGATGATGCCAACGTGGAGGGCGATGGCAATGATGCCGATGCCGATGCCACACTGGACGAGGAGGTAGATGACAGTAATACCGGCTTGGAAGATGGAATCGATATAGATTTGTTAGAGGCCGAAGCCGAAATTGAAGAAGTCGACCCTGATAATGTAGAATCTGAGGAACAATATCTCTTAGGCTAA
- Protein Sequence
- MDNLEPWNMFSNELMADEENVNDIEAGGVRDKNVSFSIPSPVQNMHVKEEPQEVLDDDNDNVPLHFLAGRTNRNYNNNDIQIRNTEDDNALFDFGLESSNSQNRTFFNKSTAAEKDFPKLESEDKYYNSMIKFEDAIIYICPACGHEFSSQDAWKNHLNVIHLYNTRRGLNFIQIDKLYHECMECRKRIAMHSMENLLKHKFTHLPYRCSKCMVCNRQYKYRQDLMVHLRMTHRDDLLELLKKEHKSSKTSNSQPQTIRSILSRTDGSTNIPTISIGTVKENAKDLFDNIEVKNELINEDDDTMGEDSQPPPVKKPASDLPAFLEDGSTNGSASDQPMTSGSNKAVEVDEIDVSLEEYVLFTCPQCGTECETQAQWHQHIEFVHEFGTRRGLNFRELLNQQAQCMGCNMILSNTSIRNLQVHKFSHLPYKQWMSCKLCFTSFTSNHEIIKHLAAKHHLVSEIVKPAPVVEVNNDDESQEAFGLDNVGDSYGGFADDNDYSVGGGGGVNSGGGGGGGGGGGGGGGGCGGGSGNSNGNGGYGASERKNPASGSDSQPIKYDERDVFEQHITYICPACGKEYNDKKVWRKHIVEIHKLGELENLNFESLNDRQLKCRECDKIITNAYGIQNAQQHRMTHLQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGARIGFGPAHSAPVTAPAPATTNYTGSSNSSTFKPFVKKPYKIAHYPPKEIVRLSNFTYEIVHLIEDDDDDDDVTFTGGYDFAKGDAHLYKNNSPYNTPSKRSINMEQITRNKCVDCGTIFPTPQSLQHHIRQEHEFVDYQNSPSTKATQNEEKSNDTDDLLVPSRNADVQLEEPTTMECNFIYLCPQCGLEFRSQVKWRRHINIEHNFDQRVSLGFRPLDKFRYQCRICKDTITSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMLAHLRQKHNIIEVMEGGTVSSSNDNTQPRHSSNSNNKDFNDAPARPIRNSDPSYNNANRPPGLKTVEDVISFHNAVDHETITYHCPSCNQSFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFSCTACEGEFVRKQMFFKHLDRNTNKCSGINPDNNYTDSVDNSTAVSNEDEGNDDLSSTLAEKAGSSSTKFSWPTRSSLPVQPTTAGNSESISDNQGCFTLNCPQCGADFETTRGWREHINIEHNLNNRTVLNFKKIGAKLHLCLECNEQVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHPNMVQKMKNYEDDCGTLDEDDDANVEGDGNDADADATLDEEVDDSNTGLEDGIDIDLLEAEAEIEEVDPDNVESEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742345;
- 90% Identity
- iTF_01397996;
- 80% Identity
- -