Svit007776.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- stc
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:88447822-88451386[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9 3.6e+04 -4.0 1.6 15 19 328 332 327 332 0.81 2 12 0.054 1e+03 0.9 0.2 4 10 361 367 360 368 0.95 3 12 5.5e-07 0.01 16.9 15.1 1 19 373 390 373 390 0.93 4 12 8.4e-07 0.016 16.3 13.4 3 18 428 443 426 444 0.91 5 12 1.3 2.5e+04 -3.5 3.1 8 13 449 454 445 457 0.68 6 12 1.7e-07 0.0033 18.5 19.4 1 19 484 502 484 502 0.98 7 12 0.00023 4.3 8.5 16.5 4 18 550 564 543 565 0.86 8 12 0.045 8.5e+02 1.2 12.3 1 11 605 615 605 627 0.91 9 12 4.5e-10 8.5e-06 26.7 15.5 1 18 632 649 632 650 0.97 10 12 2 3.8e+04 -8.6 11.0 10 18 697 706 686 707 0.75 11 12 1.9e-07 0.0036 18.3 14.4 1 16 743 758 743 768 0.92 12 12 3.6e-07 0.0069 17.4 12.2 1 18 775 793 775 794 0.90
Sequence Information
- Coding Sequence
- ATGTCTGATGCATTCCATCATCGTTACCACGACGCAGGCGGACCTGGAAGCGGAAATAACAACTATATTAATTTCAATCAGTTTATGATGCAGCACAATATTATTCAAGctggaggaggaggaggaaatGGTTCCTCTTCAGCGTCGTCTGTGAATGTCAATGGCGATATGGATCGAGGATCATCATCCAATCCCTTCCATTACAATGGAGGAGACTATGGTGGCTATCAGTCTCATCAAGTCGACGATACCTATTACATGAATGGAGGAGGGGGTGTGGGTGGATCTGGAAGAGTCTCATCCAACTACAACAACTACACCCAACAACGCCAATCGAACTACTCCAATTCAAATCTTCATGCCAACGCAGCCGAGTTCGTTCCCAGATTTTCGAATCTTTCGCTCGGCGAATCGGGAACTGGCTTCAATTCCAATGACATGGCTGATATTCAAAATGCCAATGGTCTATCGGCTAGCGAGAGGCATGGAGGCTCGCCAAAGTCTCCACCACAGCGTTACACCGGTGCCACAAGTAAAAATCGTGAATCCACATCTCGTGGTGGTTCTGGAGGAGCTGGTGCTTCTTCCCGGCGACAACAAAATGGCCGGGACTTCCAGAGAAATCAGCGCTATGACAATCATCGAAGCAACAAACGTCGTGACGACTGGAATAGAAATCGAGATCGTGTGAATGCCTTCAGAGATGAAAAGTTCACTCTGGAGAATGGAAAAGATAGCCCACAGGCCTCGCCTGAGAAGAAACCCTCTCCAAAAAAGCCATCGCATTCCGAAAATGAGAAACTCTCACAGCGTGAGAAACTAATGCGAGAGATCGAGGGACGTCGTCTGGAGTGCCTGGTCTGTGTGGAGCTAATCAAAAGTCACAACTCAGTGTGGTCATGTCACAATTGCTATCACATCCTTCATCTTAATTGCATCATCAAATGGGCTTCTAGTTCAAAGTCCGAGGATGGCTGGCGTTGTCCAGCTTGCCAAAATGTCGAAAAGGATGTTCCACGAGATTATTACTGCTTTTGTAGCAAGGTCAAGAATCCACAATTGAATCGCAACGACATAGCTCATTCTTGTGGCGAAGTGTGCGGACGTATCGAAGGCTGCTCACATGCTTGTACATTGCTCTGTCATCCCGGACCGTGTCCACCATGTCAGGCAAACGTTACACGAGAATGCGGCTGTGGCAAGACCTCAAAGTCAATGCAGTGCTATTTGAAGGAATCGATTGAGTGTGCAGAGATTTGCCAGAAATTGCTCAATTGTGAATTGCATTCGTGTGAGGAGAAATGTCACGAGGGCAAGTGTAAGCCATGCGAGCATAAAGTTGATCAAAAGTGCCACTGTGGAAAACATGATAGACAGgTGGCTTGTACCCGAGATTCGCACGAAAAAAAGAATTACTCTTGCGGCAAACCATGTGGCAAGGATCTAGCTTGTGGCAATCACAAGTGTAAGGATTGTTGTCACACTGGTGAATGTCGTCCATGCAAGCAGAGCCCTGAAATGACAACGTCATGTCCGTGCGGTAAGATGCCAATAGTATTGGAACAGCGAAAATCCTGCCTCGATCCGATACCGGTTTGCGATGGCATATGTAATAAGACACTACGCTGTGGCAAGGCAGCTCATCCCCATCACTGCACCACCAAGTGTCACTTGGGTAATTGTCCACCATGCAACAAACAAACTGCAGTCAAATGTCGTTGCGGTCACATGGACCAAATGATAAAATGCCGTCAGCTGTCGACCAGAGCCGATGATGCCCGCTGCAAGAAGCGCTGTGTTAAGAAACGATCATGCGGCAAGCACAAATGCAATCAAGAGTGCTGCATCGACATCGATCACATCTGTCCGATGCCCTGTAACTATACTCTATCGTGTGGCAAACATAAGTGCGACCAACCATGCCATCGGGGAAACTGTCCCCCATGCTATCGCAGTTCGTTCGAGGAGTTGTATTGTGAATGCGGCGCTGAGGTCATCTATCCACCGGTGCCATGTGGCACTAAGAAGCCAGTGTGCAAGCGCCATTGCTCGCGACAGCATCCTTGCGATCATCCAGTTCAACATAACTGCCATTCGGCGGCCACTTGTCCGCCATGTATGATGTTCACCACCAAGTGGTGCTACGGACAGCATGAGCAGCGTAAAACCATTCCATGCATTCAGGAGAGTTTCAGTTGCGGACTGGCGTGCAGCAAGCCACTGCCCTGTGGACGACACAAGTGCGTCAAGCCATGTCATGAGGGACCATGTCAGGCAGCCGGTGAGATATGTAAGCAGAGTTGCACCACTCTTCGTTCTGCATGTGGGCATAAGTGTATGGCGCCTTGCCACGAAGGAGATTGCCCAGATACTGCTTGCAAGGAGATGGTTGAAATTACATGTGAGTGTGGCAACCGGAAGCAAACGCGGACATGCCAAGACTTCTCCAGAGAGTATAGACGTATAGCTACAGCCCAGCTGGCTTCATCGATGGCTGAGGTGCAACGAGGCAATACCATTGAGCTTAGTGACATTCTAGGACCTGTCAAGATCAACAGCAACAAAGCACTTGAATGCAACGAAGAGTGCCGGACATTGGAACGCAATCGTCGCCTTGCAATCGGCTTGCAAATCCGTAATCCCGATCTGCCACAGAAGCTAACAACCAAATATTCTGATTTCATCCGTGGCTATGCTAAGAAAGATCCAACTCTCGTTAAGAGCATTCATGATTCACTCACGACTCTCGTTAAATTGGCCAAAGAGAGCAAACAAAAATCGCGCAGCCATTCATTTCCAACTATGAAACGAGAAAAACGCCAGTTGGTCCATGAGATGTGCGAGATGTTCGGTGTAGAGTCGGTAGCCTATGATGCCGAGCCCAATAGAAATGTTGTCGCTACGGCCTATAAAGACAAGtcCTGGTTGCCAGCTCAGAGTATCATGGAAGTTATTCAACGTGAAAGTGGACAAAGACGTGTTCCAGTGCCGAGTAATAATGCCTGGGGCATAAAGCGATAA
- Protein Sequence
- MSDAFHHRYHDAGGPGSGNNNYINFNQFMMQHNIIQAGGGGGNGSSSASSVNVNGDMDRGSSSNPFHYNGGDYGGYQSHQVDDTYYMNGGGGVGGSGRVSSNYNNYTQQRQSNYSNSNLHANAAEFVPRFSNLSLGESGTGFNSNDMADIQNANGLSASERHGGSPKSPPQRYTGATSKNRESTSRGGSGGAGASSRRQQNGRDFQRNQRYDNHRSNKRRDDWNRNRDRVNAFRDEKFTLENGKDSPQASPEKKPSPKKPSHSENEKLSQREKLMREIEGRRLECLVCVELIKSHNSVWSCHNCYHILHLNCIIKWASSSKSEDGWRCPACQNVEKDVPRDYYCFCSKVKNPQLNRNDIAHSCGEVCGRIEGCSHACTLLCHPGPCPPCQANVTRECGCGKTSKSMQCYLKESIECAEICQKLLNCELHSCEEKCHEGKCKPCEHKVDQKCHCGKHDRQVACTRDSHEKKNYSCGKPCGKDLACGNHKCKDCCHTGECRPCKQSPEMTTSCPCGKMPIVLEQRKSCLDPIPVCDGICNKTLRCGKAAHPHHCTTKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPMPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPVCKRHCSRQHPCDHPVQHNCHSAATCPPCMMFTTKWCYGQHEQRKTIPCIQESFSCGLACSKPLPCGRHKCVKPCHEGPCQAAGEICKQSCTTLRSACGHKCMAPCHEGDCPDTACKEMVEITCECGNRKQTRTCQDFSREYRRIATAQLASSMAEVQRGNTIELSDILGPVKINSNKALECNEECRTLERNRRLAIGLQIRNPDLPQKLTTKYSDFIRGYAKKDPTLVKSIHDSLTTLVKLAKESKQKSRSHSFPTMKREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKDKSWLPAQSIMEVIQRESGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01357609;
- 90% Identity
- iTF_00894449;
- 80% Identity
- -