Svit008611.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- Hr39
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:102131360-102135337[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.37 7.1e+03 -2.9 1.7 145 177 23 55 5 87 0.51 2 4 1.2 2.2e+04 -4.5 7.8 54 160 234 329 200 366 0.41 3 4 4.6e-16 8.7e-12 46.2 5.2 1 151 461 603 461 619 0.72 4 4 1.6e-78 3e-74 252.0 0.1 200 408 614 815 601 815 0.95
Sequence Information
- Coding Sequence
- atGTCATCATTAACGAAAAGCGATTCATCGGCATATAATGCGGCCCACGGCAGCACTATTACCAATATTGTGGGCGTCCCACAATCATCTTCGACGTCATCTTTATCGAcaacatcattatcatcatcatcgatcaTTCGCAACAACGTCTCGGTGACTAACATCAAATGCGAAGAAGATCGCCACAGCAGCAATAGTAGTCCTCTAAGAACAATACATCCATCGTCTGTTGTGACAACAGCCTACTACAATCAAGGTATCAATGGAGCCATTCGGATTCCGGTTAGTAAACGAGATGAATCAGACTCAGAGAGTGAGCTGTCGCATATTGAAAACCTCAAGGTCAATCGACGATCGGTCAGCCAATGTGTGAAAAATGGTCCAAGGCCAATGTCGTGGGAGGGAGAATTGTCCGACACTGAACCCGATCCGATGGACACAGAAAATTCGACCAGCTGCGATAAGACCTTCCCAGGCGCGCCTGTGACTGTGATTAAAAACGACCCGGATCGTAAGCCCATGCTCGACCAGATTTGCCTGGAGATAAATTCATCACACTACATTAGCAAGAAGCCACAGAGTGATCCTATTAACCTTAAGTATGAGCCAGGACTTCTGGCCGATCCCACCGGCACCAGTAACTCGCCATTGCTTGCACGTTCCAAAACGACAGCCAATTTATTGCCTGCTAATCCTAGCCCCGATTCTGCCATTCATTCCGCGTACACACACAGTTCACCAAGTGAATCGCCTCTTACATCCCGACACGCTCCCTATACACCCTCATTGAGTCGCAATAATAGCGATGCGTCGCACAGCAGTTGTTACTCCTACAGCTCGGAATTCAGTCCGACTCATTCGCCCATCGCCGGCCGCCACAATATGTACGGCAATTATAGTGGCGGCTCTCTTCATCATTCCGTATTATATCGTCCGACTATTTCGGACAGTGGCAGCAGTGCTGCCAGTTGCTCCTCGTCGGATCCACAGAATCTATCACAATCACAAGCCGCTGTTGTGGCAGCGGCGGCGTCTGCGCTGGCCGCAGCTTCCTCCACATCAATCTCGGTGAATGGCACAACTCCGCCCGGTCTTAAGACTGAAGAGCTGTTGTTCGACAGCGAAGCCATCCCATCGGCGGGAATTTCACGACAGCAGCTTATCAACTCGCCGTGTCCCATTTGTGGGGACAAGATATCTGGCTTCCATTATGGCATATTTTCGTGTGAATCATGTAAGGGCTTCTTTAAGAGAACGGTACAAAACCGAAAAAACTATGTGTGTGTGCGAGGTGGACCATGTCCGGTAACCATCTCAACGCGCAAGAAATGTCCAGCATGTCGCTTCGATAAATGCCTGCAAAAAGGCATGAAACTCGAGGCGATTCGAGAAGACCGAACTCGTGGCGGACGCTCTACTTACCAGTGCTCATACACGCTACCCAGTTCTATGCTTAGTCCATTGCTGAACAATGACCAATCCaaccagcagcagcaacagcatcaacaacagcaccaacaacaacaaagtggCTCCTCGCGTATGGGAGTCAACGGCTTCGTCATCAAAACAGAACAACCAGACAGCAGCACGGGCGGAACGTCGACCCCAACACCAGGAAGTAGTAACTATCAACGTTCCACAAGTCACGACATCCCCACCCTGCTGCAGGAGATAATGAACGTTGAACATCTTTGGCAATACAATGCATCTGAGTTGGCACGACTGAATCAACCGTTGTCGGCGTCGTGTTCGTCTTCATCGACGTCATCATCGACATCGGCGGCGCCACCTGGTAATATTGCCTCAAATCCGCTGCTGGCCAGTGCCGGTCTCTCATCGAACGGCGAGAATGCAAATCCCGACTTAATAGCTAACTTGTGCACAGTTGCTGACCATCGATTGTATAAGATTGTCAAATGGTGCAAGAGTTTGccgctttttaaaaatatttctATTGATGATCAAATTTGCCTGCTTATCAACTCGTGGTGTGaacttttattgttttcatgTTGCTTCCGATCCATTGATTCACCAGGTGAGATTAAAATCTCACAAGGCAAGTCAATAAATTTAGCTAGAGCGAAATCGAATGGTTTGCAGtCGTGCATTGAACGAATGCTCAATTTGACAGACCATTTACGACGATTACGAGTCGATCGGTATGAATATGTTGCCATGAAAGTTATCGTTTTACTTCAATCAGATACATCTGAATTGACCGAACCGGTCAAAGTACGTGAGTGTCAAGAGAAAGCATTACAATCTCTTCAAGCATATACCTTAGCTTTTTATCCTGAAATGCCATCGAAATTCGGTGAATTACTATTGAGGATTCCAGAACTGCAAAGAACGTGTCAgcttGGCAAAGAGATGCTAACTATAAAATCTCGTGATGGTGGTGATTTCAATTTACTTATGGAACTTCTACGCGGAGAACATTGA
- Protein Sequence
- MSSLTKSDSSAYNAAHGSTITNIVGVPQSSSTSSLSTTSLSSSSIIRNNVSVTNIKCEEDRHSSNSSPLRTIHPSSVVTTAYYNQGINGAIRIPVSKRDESDSESELSHIENLKVNRRSVSQCVKNGPRPMSWEGELSDTEPDPMDTENSTSCDKTFPGAPVTVIKNDPDRKPMLDQICLEINSSHYISKKPQSDPINLKYEPGLLADPTGTSNSPLLARSKTTANLLPANPSPDSAIHSAYTHSSPSESPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIAGRHNMYGNYSGGSLHHSVLYRPTISDSGSSAASCSSSDPQNLSQSQAAVVAAAASALAAASSTSISVNGTTPPGLKTEELLFDSEAIPSAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVTISTRKKCPACRFDKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPSSMLSPLLNNDQSNQQQQQHQQQHQQQQSGSSRMGVNGFVIKTEQPDSSTGGTSTPTPGSSNYQRSTSHDIPTLLQEIMNVEHLWQYNASELARLNQPLSASCSSSSTSSSTSAAPPGNIASNPLLASAGLSSNGENANPDLIANLCTVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSIDSPGEIKISQGKSINLARAKSNGLQSCIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELTEPVKVRECQEKALQSLQAYTLAFYPEMPSKFGELLLRIPELQRTCQLGKEMLTIKSRDGGDFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311850;
- 90% Identity
- iTF_00694670;
- 80% Identity
- iTF_01396604;