Svit008623.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Syrphus vitripennis
Gene Symbol
sip1
Assembly
GCA_958431115.1
Location
OY288108.1:102356196-102359011[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.76 1.4e+04 -3.6 0.0 41 87 308 359 302 372 0.65
2 3 6.3e-92 1.2e-87 295.1 12.1 2 275 397 663 396 663 0.97
3 3 0.044 8.4e+02 0.4 0.0 157 191 675 708 668 718 0.77

Sequence Information

Coding Sequence
atgtctggaaacgaatatgaagcATTTGAAGTAACCGACTATGATTTGGCAAATGAATTCAATCCAAATCGACCAAGAAGAAAACtgacaaaaaatcaacaaatttatGGAATATGGGCTGATAGTGACAGCGATGGCGATAGCGATGTTGAAATGACCGGTCGACGTAAGACCGGTGCTGGTAAGGCTCGTAGTTCTGGACCGGTGAACTTTGTGACTGGAGGCATTCAGCAGTCGGGAAGTTTTAAGAAGGACGATCGCAACCAAGATGACGATAACCAAATCACCGATGAAGAAGATGAAGATTCATCACATCGTCGAGCAGTGCAGAGCAAAGATCCGGCAGATAGCGCCACGAATTCCTCATCCGAAGAGGAAGCAGCTAATCCAGCTCGCATGGGCTTTGGAATGAAGCAGCGCCAACCTACTTCTAGCAGTAAGCCAGTCGGAGCATGGGAACAACACACGAAGGGAATCGGAGCTAAATTATTGCTTCAAATGGGTTACAAACCTGGCATGGGTTTGGGTAAAGATCTGCAAGGTATTGCACAACCTGTCCAAGCTACTTTGCGCAAAGGACGTGGAGCCATTGGTGCATACGGACCCGAAACCCCACAAACAGTCGGTGATCCTGGCCAGAGCAAACAACAAATTGAAGAAGAGGACACAAAAGAATACAAGGACAagttgaacaaatggaaaaggGGTGAAAGCAAGAAGGATCCACGAAAAAATCGCTACCATTACCGCTCTGTCGAGGAAGTAATCGAGAAGGGCAAAAAGTACTCTAGTGGCATTCTGCCAGACAAGCTGAGCAAGAAACTTGGGAATGTACCAGTGATCGATATGACTGGCCCAGAGAAACGCGTCCTTAGTGGCTACCATGCCCTTGGACAGACGAAAATCATCGACGAGGATCTCTACGACCATCAACCTTCAAAGAAAGCAACCGGATTCGCCCTGCCCGAGTTGATGCATAATCTGAATTTGATTGTCACCCAATGCGAGCAGGACATAATTGCATTGGACACCACTGGACGTGAAGCTGCGGACAAATACGAAGGTCTTGAGCACgagaaaaaaaatctcgaaaagatAGTTCGATTGGAAGAAGATCACATAAGCACTTTGGAGAAAGCCATGACTCTTGTAGAAGAGCTCACTTCAGACTCAGACAGTCTGACTCTAGCCAGAGCGGAAAAGATCTTCATTGAGCTACAACGAGACTTCGCTGCGGAATACAAGGAATTCGCCTTAGGCGATCTAGCAGCTGGAGTGATTGCGCCATTGGTCAATATCGAATTGAAGTCCTGGAATCCTTTGGACGATCCTCATCGTTTCATCGATACCATCAAGAAATGGAGAACAATTCTTGACATGCATCCATCGGGACAGCGAAATAACGTCTTCGATCCGTATTCATCACTAGTCTGGGCCGGAGTTATTCCCAGTTTCAGACAATCGGTGAACGGTTGGAATCCCAAGATGCATCAAAAGATGGCGGCATTGCTGGATTCTTGGGCACCACTATTTCCCACATGGATCCTGGATAATGTACTGGAGCAATTGATTCTGCCTCAGTTAGTTGCCGGTGTCAATGAATGGGATCCACTTACCGACACCATCCCGATTCATAGTTGGATTCTtccatggaatacaattttgGGACACAAAATGGAAGAACACATATTCCCGACAATACGTGAAAAGTTGGGCTACGCTCTTCAGGCGTGGATTCCACAAGACAGATCGGCTCGAGCTATGATAACTCCTTGGAAGGGGGCATTCGAAGATGGAGAAATGCAGGCTTTTATGATGAAGCACATCATACCCAAGTTGCAGATGTCTTTAAATGATTTGATTATAAATCCATTGCAGCAGGATTTGGaaCTCTGGAATCAGGTATGGGAATGGAATGAGCTCATACCACCTCTGCTAATGGGACAAATGCTGGATAAGTACTTCTTTCCCAAATGGATGCAAGTTCTTGTTCTCTGGCTCAATCAATCACCTGATTTCGATCAAATCTCCCGATGGTACACCGGGTGGAAATCAGTTTTGGGCGAGGAGCTACTAAAATTGCCAATGATCAAGGAACACCTGCGACGTGCTTTGGAAATGATGCACAGAGCCACAGAAACAATGGCCACACCAAAGCCAGTACCCACCCCAGTAGCACCACCTCAAGCTTCAACATCTTCACAATCAGCATCGTCGGCAACAACAAGCTCTGCTGCTAATCTTAATCCTCCGGCATTGATGGATCTGCAAATAGTTCCTCCTGTGCAGTTGGAATTCAAAGAATTGGTTTCGCAGAAATGTGCAGAACGTGGTGTTATTTTTGCCCCAATGCCAGGACGTAGAGAATTTGGCAAGcaggtatatcgagttggaaaattattttgctataTCGATCGAAATGTTGTCATGTTGAGTGATGGAAGTTTGAAAAACTGGACCCCAACTTCATTAGGGTTGACTATAGAAAGAGCTTTATCTggataa
Protein Sequence
MSGNEYEAFEVTDYDLANEFNPNRPRRKLTKNQQIYGIWADSDSDGDSDVEMTGRRKTGAGKARSSGPVNFVTGGIQQSGSFKKDDRNQDDDNQITDEEDEDSSHRRAVQSKDPADSATNSSSEEEAANPARMGFGMKQRQPTSSSKPVGAWEQHTKGIGAKLLLQMGYKPGMGLGKDLQGIAQPVQATLRKGRGAIGAYGPETPQTVGDPGQSKQQIEEEDTKEYKDKLNKWKRGESKKDPRKNRYHYRSVEEVIEKGKKYSSGILPDKLSKKLGNVPVIDMTGPEKRVLSGYHALGQTKIIDEDLYDHQPSKKATGFALPELMHNLNLIVTQCEQDIIALDTTGREAADKYEGLEHEKKNLEKIVRLEEDHISTLEKAMTLVEELTSDSDSLTLARAEKIFIELQRDFAAEYKEFALGDLAAGVIAPLVNIELKSWNPLDDPHRFIDTIKKWRTILDMHPSGQRNNVFDPYSSLVWAGVIPSFRQSVNGWNPKMHQKMAALLDSWAPLFPTWILDNVLEQLILPQLVAGVNEWDPLTDTIPIHSWILPWNTILGHKMEEHIFPTIREKLGYALQAWIPQDRSARAMITPWKGAFEDGEMQAFMMKHIIPKLQMSLNDLIINPLQQDLELWNQVWEWNELIPPLLMGQMLDKYFFPKWMQVLVLWLNQSPDFDQISRWYTGWKSVLGEELLKLPMIKEHLRRALEMMHRATETMATPKPVPTPVAPPQASTSSQSASSATTSSAANLNPPALMDLQIVPPVQLEFKELVSQKCAERGVIFAPMPGRREFGKQVYRVGKLFCYIDRNVVMLSDGSLKNWTPTSLGLTIERALSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01356876;
90% Identity
iTF_00664832;
80% Identity
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