Svit002547.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:33742424-33744366[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-10 1.9e-07 31.7 0.0 3 44 19 60 17 61 0.91 2 2 9.1 7.1e+03 -2.1 0.1 11 22 136 148 136 148 0.78
Sequence Information
- Coding Sequence
- ATGCCAACAGTTTATAAAAAACAAGAGTCAGCAAACCGGGGCAAATGGACTCAAGCCCAACTCACAGCCGCCGCTGAAGCTGTGCGCGacaataaaatgtcaaaaaaagctgctgcaaaaaattttggaatacccTTTACAACCTTCAGAAGGCTACTAAAAGAACCAAATACTTTAAAACCGAGTTTGGGATCCGTGTCCTGTCTTGGACAACAAAGAGAGGACAAAATCGTTGCCCATATCAAAAAACTCCAGGCACATGGATTCGCACCATCCAGAAAAGAAGTTTGCCAAATGGCGTATGGCTTAGCTGAAAAGTGTGGCATAAGACACAATTTTAATCGCGTAAAAAAAGAAGCTGGAAAGGATTGGTTCATCCTATTTATGAATCGGCATCCAGACCTAGCTGTTCGGAAATCAGAGGGAGTTTCGCAGGCTCGAGCCAGAGCCATGTCAAAAACAGAATTACCTATAGCTGAGAAGGGGTCTCGCAACATAACCGCAATAACATCTGCTGAAAGAGGGGAGACAATAACGGTCATAGCATGCTGTAATGCCGAGGGTACTTTTCTGCCACCAGCCTGTGTTTTTAAAGgcaaaaacaaaaaggctgAATTCGAAGATGGAATGCCACCTGGATCAGTGGTTTATATGGGTGACAAATCGGCCTATGTAAACAGCgagatatttttcaaatggcTAAAAGAACACTTCATACCAAGGAAGCCAGAAGGCAAAACCATATTAATTTTGGATGGCCATTCTTCCCATTGTAGCAATGTGGAAATGTTAGAGTACGCAATCGAACATCAAATAATACTGCTTTGCCTTCCACCACACACAACCCAATTTTTGCAACCCTTGGACAGATCGTTCTTCAAACCATTCAAGAGCTCTTATTATGAGGCTtgtaataaattcataaaaactaaTCCAACCAGAAAGCTATCTCGCCTCAAGTTCGGCATGCTTTTGTCCCAGGCATGGGTCAAATCAGCAAATCCTAGCAATGGAATTTCAGCATTTTCATCAACTGGCATATTTCCCCTGAATCCTGATATTATCCCAGATTATGGATACATTAAAAGCAACATCACATCAAATGAAACTGAGAGTCACACCAATGAAATGCAGACTCAAAGTAATCCGCCCTTGCAATCCAATTCATCAGATAGAGATTTGACTCCACCACCACTGGAAATCATCATTCAGCAAGAGAATCCAGAAACACCAAAGGGTGATGCAAGTGAAATAACTCCAGGGAAAATGCTGAATGTGATCTCTCCAATACCGTCCACCTCACGGGGTATCACACATCATCCGAGGGCTCAAAAATCTCGAGTTTTGACATCATCTCACAACTTGgcttctcaaaaacaaaaacttttaaagaagTTAAAGGTCAAAAAGGTCCTTAAAAAGACGAAATATAACAAAAAGAATACCAATGGTGGGCCTGAAGTCAGCTCTTCAGAGGACGAGAAAATGTCGTTGCATGATGAATCGGATGGACCTGAAGACTTCGGTGAAAACACTTGTGTTGGCTGTGGCGAGGATTATAATGAAACAACAAAACCGGACGAATGGATTAAGTGCATCGTATGCCACTTTTGGTCTCACGATTCTTGCACATCGTTTAACAACACTTGCAACAAAtgtggcaaaaaaaatatcaaaaaaaagtag
- Protein Sequence
- MPTVYKKQESANRGKWTQAQLTAAAEAVRDNKMSKKAAAKNFGIPFTTFRRLLKEPNTLKPSLGSVSCLGQQREDKIVAHIKKLQAHGFAPSRKEVCQMAYGLAEKCGIRHNFNRVKKEAGKDWFILFMNRHPDLAVRKSEGVSQARARAMSKTELPIAEKGSRNITAITSAERGETITVIACCNAEGTFLPPACVFKGKNKKAEFEDGMPPGSVVYMGDKSAYVNSEIFFKWLKEHFIPRKPEGKTILILDGHSSHCSNVEMLEYAIEHQIILLCLPPHTTQFLQPLDRSFFKPFKSSYYEACNKFIKTNPTRKLSRLKFGMLLSQAWVKSANPSNGISAFSSTGIFPLNPDIIPDYGYIKSNITSNETESHTNEMQTQSNPPLQSNSSDRDLTPPPLEIIIQQENPETPKGDASEITPGKMLNVISPIPSTSRGITHHPRAQKSRVLTSSHNLASQKQKLLKKLKVKKVLKKTKYNKKNTNGGPEVSSSEDEKMSLHDESDGPEDFGENTCVGCGEDYNETTKPDEWIKCIVCHFWSHDSCTSFNNTCNKCGKKNIKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984161;
- 90% Identity
- iTF_01396433; iTF_00984161; iTF_00984162; iTF_01396428; iTF_01396429; iTF_01396430; iTF_01396431; iTF_01396432; iTF_00984160;
- 80% Identity
- -