Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288108.1:9101532-9104792[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.1e-10 2.4e-07 31.4 0.0 3 44 19 60 17 61 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.1e-10	2.4e-07	31.4	0.0	3	44	19	60	17	61	0.91

Sequence Information

Coding Sequence: ATGCCAACAGTTTATAAAAAACAAGAGTCAGCAAACCGGGGCAAATGGACTCAAGCCCAACTCACAGCCGCCGCTGAAGCTGTGCGCGacaataaaatgtcaaaaaaagctgctgcaaaaaattttggaatacccTTTACAACCTTCAGAAGGCTACTAAAAGAACCAAATACTTTAAAACCGAGTTTGGGATCCGTGTCCTGTCTTGGACAACAAAGAGAGGACAAAATCGTTGCCCATATCAAAAAACTCCAGGCACATGGATTCGCACCATCCAGAAAAGAAGTTTGCCAAATGGCGTATGGCTTAGCTGAAAAGTGTGGCATAAGACACAATTTTAATCGCGTAAAAAAAGAAGCTGGAAAGGATTGGTTCATCCTATTTATGAATCGGCATCCAGACCTAGCTGTTCGGAAATCAGAGGGAGTTTCGCAGGCTCGAGCCAGAGCCATGTCAAAAACAGAAGTGGCTACGTATTTTCAATTGCTAGAAAAAACACTATCCGAAAATGATTTGCTGGACAAACCAGGCCATATTTATAATATGGACGAGACCGGATGCCAGCTTAACAATAGACCATCTTTAGTTATAGCTGAGAAGGGGTCTCGCAACATAACCGCAATAACATCTGCTGAAAGAGGGGAGACAATAACGGTCATAGCATGCTGTAATGCCGAGGGTACTTTTCTGCCACCAGCCTGTGTTTTTAAAGgcaaaaacaaaaaggctgAATTCGAAGATGGAATGCCACCTGGATCAGTGGTTTATATGGGTGACAAATCGGCCTATGTAAACAGCgagatatttttcaaatggcTAAAAGAACACTTCATACCAAGGAAGCCAGAAGGCAAAACCATATTAATTTTGGATGGCCATTCTTCCCATTGTAGCAATGTGGAAATGCTAGAGTACGCAATCGAACATCAAATAATACTGCTTTGCCTTCCACCACACACAACCCAATTTTTGCAACCCTTGGACAGATCGTTCTTCAAACCATTCAAGAGCTCTTATTATGAGGCTtgtaataaattcataaaaactaaTCCAACCAGAAAGCTATCTCGCCTCAAGTTCGGCATGCTTTTGTCCCAGGCATGGGTCAAATCAGCAAATCCTAGCAATGGAATTTCAGCATTTTCATCAACTGGCATATTTCCCCTGAATCCTGATATTATCCCAGATTATGGATACATTAAAAGCAACATCACATCAAATGAAACTGAGAGTCACACCAATGAAATGCAGACTCAAAGTAATCCGCCCTTGCAATCCAATTCATCAGATAGAGATTTGACTCCACCACCACTGGAAATCATCATTCAGCAAGAGAATCCAGAAACACCAAAGGGTGATGCAAGTGAAATAACTCCAGGGAAAATGCTGAATGTGATCTCTCCAATACCGTCCACCTCACGGGGTATCACACATCATCCGAGGGCTCAAAAATCTCGAGTTTTGACATCATCTCACAACTTGgcttctcaaaaacaaaaacttttaaagaagTTAAAGGTCAAAAAGGTCCTTAAAAAGACGAAATATAACAAAAAGAATACCAATGGTGGGCCTGAAGTCAGCTCTTCAGAGGACGAGAAAATGTCGTTGCATGATGAATCGGATGGACCTGAAGACTTCGGTGAAAACACTTGTGTTGGCTGTGGCGAGGATTATAATGAAACAACAAAACCGGACGAATGGATTAAGTGCATCGTATGCCACTTTTGGTCTCACGATTCTTGCACATCGTTTAACAACACTTGCAACAAAtgtggcaaaaaaaatatcaaaaaaaacataAGCCAtcatttcaaagaaaatcttGATTTTCTTATACAATCGTTTCCGaTTGGAACAGTATTAGATCATTTAAAATCTCCAGTGTCCGCGCCATGGATTGCTGATATGACCGAGGATCGTGAGAAAATCCTTCTCTACATGGAAGATTGCTTACCAGTGCAAAGGTCATATTTCAACAACCAGGAGTCGTATCCTTCGATTGAAATGATCAAAACTAACTGGCCCTAA
Protein Sequence: MPTVYKKQESANRGKWTQAQLTAAAEAVRDNKMSKKAAAKNFGIPFTTFRRLLKEPNTLKPSLGSVSCLGQQREDKIVAHIKKLQAHGFAPSRKEVCQMAYGLAEKCGIRHNFNRVKKEAGKDWFILFMNRHPDLAVRKSEGVSQARARAMSKTEVATYFQLLEKTLSENDLLDKPGHIYNMDETGCQLNNRPSLVIAEKGSRNITAITSAERGETITVIACCNAEGTFLPPACVFKGKNKKAEFEDGMPPGSVVYMGDKSAYVNSEIFFKWLKEHFIPRKPEGKTILILDGHSSHCSNVEMLEYAIEHQIILLCLPPHTTQFLQPLDRSFFKPFKSSYYEACNKFIKTNPTRKLSRLKFGMLLSQAWVKSANPSNGISAFSSTGIFPLNPDIIPDYGYIKSNITSNETESHTNEMQTQSNPPLQSNSSDRDLTPPPLEIIIQQENPETPKGDASEITPGKMLNVISPIPSTSRGITHHPRAQKSRVLTSSHNLASQKQKLLKKLKVKKVLKKTKYNKKNTNGGPEVSSSEDEKMSLHDESDGPEDFGENTCVGCGEDYNETTKPDEWIKCIVCHFWSHDSCTSFNNTCNKCGKKNIKKNISHHFKENLDFLIQSFPIGTVLDHLKSPVSAPWIADMTEDREKILLYMEDCLPVQRSYFNNQESYPSIEMIKTNWP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00984161;
90% Identity: iTF_01396427;
80% Identity: iTF_01396428;